data_1NFT # _model_server_result.job_id 51efRarkFXmii46eNPvZjA _model_server_result.datetime_utc '2024-12-04 16:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":334}' # _entry.id 1NFT # _exptl.entry_id 1NFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 191.139 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRILOTRIACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NFT _cell.length_a 125.29 _cell.length_b 125.29 _cell.length_c 87.53 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 62.645 108.504323 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -62.645 108.504323 0 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 62.645 108.504323 131.295 5 'crystal symmetry operation' 11_556 -x+y,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 131.295 6 'crystal symmetry operation' 12_566 x,x-y+1,-z+3/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -62.645 108.504323 131.295 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 10 1_555 A SG CYS 42 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf2 A SG CYS 17 A CYS 20 1_555 A SG CYS 33 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 112 A CYS 115 1_555 A SG CYS 194 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 A SG CYS 157 A CYS 160 1_555 A SG CYS 171 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 168 A CYS 171 1_555 A SG CYS 179 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf6 A SG CYS 225 A CYS 228 1_555 A SG CYS 239 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OH TYR 89 A TYR 92 1_555 E FE FE . A FE 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc2 A OH TYR 188 A TYR 191 1_555 E FE FE . A FE 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc3 E FE FE . A FE 333 1_555 F O NTA . A NTA 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 E FE FE . A FE 333 1_555 F O8 NTA . A NTA 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.731 ? metalc ? metalc5 E FE FE . A FE 333 1_555 F N NTA . A NTA 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc6 E FE FE . A FE 333 1_555 F O12 NTA . A NTA 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C6 H9 N O6' _chem_comp.formula_weight 191.139 _chem_comp.id NTA _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRILOTRIACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C6 NTA sing 237 n n N C10 NTA sing 238 n n N CA NTA sing 239 n n C6 C7 NTA sing 240 n n C6 H61 NTA sing 241 n n C6 H62 NTA sing 242 n n C10 C11 NTA sing 243 n n C10 H101 NTA sing 244 n n C10 H102 NTA sing 245 n n CA C NTA sing 246 n n CA HA2 NTA sing 247 n n CA HA3 NTA sing 248 n n C7 O8 NTA sing 249 n n C7 O9 NTA doub 250 n n O8 HO8 NTA sing 251 n n C OXT NTA sing 252 n n C O NTA doub 253 n n C11 O12 NTA sing 254 n n C11 O13 NTA doub 255 n n O12 HO12 NTA sing 256 n n OXT HXT NTA sing 257 n n # _atom_sites.entry_id 1NFT _atom_sites.fract_transf_matrix[1][1] 0.007981 _atom_sites.fract_transf_matrix[1][2] 0.004608 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 351 351 SO4 SO4 . C 2 SO4 A 1 353 353 SO4 SO4 . D 2 SO4 A 1 354 354 SO4 SO4 . E 3 FE A 1 333 333 FE FE . F 4 NTA A 1 334 334 NTA NTA . G 5 HOH A 1 401 401 HOH HOH . G 5 HOH A 2 402 402 HOH HOH . G 5 HOH A 3 403 403 HOH HOH . G 5 HOH A 4 404 404 HOH HOH . G 5 HOH A 5 405 405 HOH HOH . G 5 HOH A 6 406 406 HOH HOH . G 5 HOH A 7 407 407 HOH HOH . G 5 HOH A 8 408 408 HOH HOH . G 5 HOH A 9 409 409 HOH HOH . G 5 HOH A 10 410 410 HOH HOH . G 5 HOH A 11 411 411 HOH HOH . G 5 HOH A 12 412 412 HOH HOH . G 5 HOH A 13 413 413 HOH HOH . G 5 HOH A 14 414 414 HOH HOH . G 5 HOH A 15 415 415 HOH HOH . G 5 HOH A 16 416 416 HOH HOH . G 5 HOH A 17 417 417 HOH HOH . G 5 HOH A 18 418 418 HOH HOH . G 5 HOH A 19 419 419 HOH HOH . G 5 HOH A 20 420 420 HOH HOH . G 5 HOH A 21 421 421 HOH HOH . G 5 HOH A 22 422 422 HOH HOH . G 5 HOH A 23 423 423 HOH HOH . G 5 HOH A 24 424 424 HOH HOH . G 5 HOH A 25 425 425 HOH HOH . G 5 HOH A 26 426 426 HOH HOH . G 5 HOH A 27 427 427 HOH HOH . G 5 HOH A 28 428 428 HOH HOH . G 5 HOH A 29 429 429 HOH HOH . G 5 HOH A 30 430 430 HOH HOH . G 5 HOH A 31 431 431 HOH HOH . G 5 HOH A 32 432 432 HOH HOH . G 5 HOH A 33 433 433 HOH HOH . G 5 HOH A 34 434 434 HOH HOH . G 5 HOH A 35 435 435 HOH HOH . G 5 HOH A 36 436 436 HOH HOH . G 5 HOH A 37 437 437 HOH HOH . G 5 HOH A 38 438 438 HOH HOH . G 5 HOH A 39 439 439 HOH HOH . G 5 HOH A 40 440 440 HOH HOH . G 5 HOH A 41 441 441 HOH HOH . G 5 HOH A 42 442 442 HOH HOH . G 5 HOH A 43 443 443 HOH HOH . G 5 HOH A 44 444 444 HOH HOH . G 5 HOH A 45 445 445 HOH HOH . G 5 HOH A 46 446 446 HOH HOH . G 5 HOH A 47 447 447 HOH HOH . G 5 HOH A 48 448 448 HOH HOH . G 5 HOH A 49 449 449 HOH HOH . G 5 HOH A 50 450 450 HOH HOH . G 5 HOH A 51 451 451 HOH HOH . G 5 HOH A 52 452 452 HOH HOH . G 5 HOH A 53 453 453 HOH HOH . G 5 HOH A 54 454 454 HOH HOH . G 5 HOH A 55 455 455 HOH HOH . G 5 HOH A 56 456 456 HOH HOH . G 5 HOH A 57 457 457 HOH HOH . G 5 HOH A 58 458 458 HOH HOH . G 5 HOH A 59 459 459 HOH HOH . G 5 HOH A 60 460 460 HOH HOH . G 5 HOH A 61 461 461 HOH HOH . G 5 HOH A 62 462 462 HOH HOH . G 5 HOH A 63 463 463 HOH HOH . G 5 HOH A 64 464 464 HOH HOH . G 5 HOH A 65 465 465 HOH HOH . G 5 HOH A 66 466 466 HOH HOH . G 5 HOH A 67 467 467 HOH HOH . G 5 HOH A 68 468 468 HOH HOH . G 5 HOH A 69 469 469 HOH HOH . G 5 HOH A 70 470 470 HOH HOH . G 5 HOH A 71 471 471 HOH HOH . G 5 HOH A 72 472 472 HOH HOH . G 5 HOH A 73 473 473 HOH HOH . G 5 HOH A 74 474 474 HOH HOH . G 5 HOH A 75 475 475 HOH HOH . G 5 HOH A 76 476 476 HOH HOH . G 5 HOH A 77 477 477 HOH HOH . G 5 HOH A 78 478 478 HOH HOH . G 5 HOH A 79 479 479 HOH HOH . G 5 HOH A 80 480 480 HOH HOH . G 5 HOH A 81 481 481 HOH HOH . G 5 HOH A 82 482 482 HOH HOH . G 5 HOH A 83 483 483 HOH HOH . G 5 HOH A 84 484 484 HOH HOH . G 5 HOH A 85 485 485 HOH HOH . G 5 HOH A 86 486 486 HOH HOH . G 5 HOH A 87 487 487 HOH HOH . G 5 HOH A 88 488 488 HOH HOH . G 5 HOH A 89 489 489 HOH HOH . G 5 HOH A 90 490 490 HOH HOH . G 5 HOH A 91 491 491 HOH HOH . G 5 HOH A 92 492 492 HOH HOH . G 5 HOH A 93 493 493 HOH HOH . G 5 HOH A 94 494 494 HOH HOH . G 5 HOH A 95 495 495 HOH HOH . G 5 HOH A 96 496 496 HOH HOH . G 5 HOH A 97 497 497 HOH HOH . G 5 HOH A 98 498 498 HOH HOH . G 5 HOH A 99 499 499 HOH HOH . G 5 HOH A 100 500 500 HOH HOH . G 5 HOH A 101 501 501 HOH HOH . G 5 HOH A 102 502 502 HOH HOH . G 5 HOH A 103 503 503 HOH HOH . G 5 HOH A 104 504 504 HOH HOH . G 5 HOH A 105 505 505 HOH HOH . G 5 HOH A 106 506 506 HOH HOH . G 5 HOH A 107 507 507 HOH HOH . G 5 HOH A 108 508 508 HOH HOH . G 5 HOH A 109 509 509 HOH HOH . G 5 HOH A 110 510 510 HOH HOH . G 5 HOH A 111 511 511 HOH HOH . G 5 HOH A 112 512 512 HOH HOH . G 5 HOH A 113 513 513 HOH HOH . G 5 HOH A 114 514 514 HOH HOH . G 5 HOH A 115 515 515 HOH HOH . G 5 HOH A 116 516 516 HOH HOH . G 5 HOH A 117 517 517 HOH HOH . G 5 HOH A 118 518 518 HOH HOH . G 5 HOH A 119 519 519 HOH HOH . G 5 HOH A 120 520 520 HOH HOH . G 5 HOH A 121 521 521 HOH HOH . G 5 HOH A 122 522 522 HOH HOH . G 5 HOH A 123 523 523 HOH HOH . G 5 HOH A 124 524 524 HOH HOH . G 5 HOH A 125 525 525 HOH HOH . G 5 HOH A 126 526 526 HOH HOH . G 5 HOH A 127 527 527 HOH HOH . G 5 HOH A 128 528 528 HOH HOH . G 5 HOH A 129 529 529 HOH HOH . G 5 HOH A 130 530 530 HOH HOH . G 5 HOH A 131 531 531 HOH HOH . G 5 HOH A 132 532 532 HOH HOH . G 5 HOH A 133 533 533 HOH HOH . G 5 HOH A 134 534 534 HOH HOH . G 5 HOH A 135 535 535 HOH HOH . G 5 HOH A 136 536 536 HOH HOH . G 5 HOH A 137 537 537 HOH HOH . G 5 HOH A 138 538 538 HOH HOH . G 5 HOH A 139 539 539 HOH HOH . G 5 HOH A 140 540 540 HOH HOH . G 5 HOH A 141 541 541 HOH HOH . G 5 HOH A 142 542 542 HOH HOH . G 5 HOH A 143 543 543 HOH HOH . G 5 HOH A 144 544 544 HOH HOH . G 5 HOH A 145 545 545 HOH HOH . G 5 HOH A 146 546 546 HOH HOH . G 5 HOH A 147 547 547 HOH HOH . G 5 HOH A 148 548 548 HOH HOH . G 5 HOH A 149 549 549 HOH HOH . G 5 HOH A 150 550 550 HOH HOH . G 5 HOH A 151 551 551 HOH HOH . G 5 HOH A 152 552 552 HOH HOH . G 5 HOH A 153 553 553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NTA . . . F 4 25.036 74.321 58.159 1 27.9 ? N NTA 334 A 1 HETATM 2 C C6 NTA . . . F 4 24.621 73.207 59.118 1 32.28 ? C6 NTA 334 A 1 HETATM 3 C C10 NTA . . . F 4 24.291 74.466 56.809 1 22.5 ? C10 NTA 334 A 1 HETATM 4 C CA NTA . . . F 4 25.895 75.453 58.789 1 29.23 ? CA NTA 334 A 1 HETATM 5 C C7 NTA . . . F 4 25.611 72.235 59.337 1 38.25 ? C7 NTA 334 A 1 HETATM 6 O O8 NTA . . . F 4 26.534 72.166 58.565 1 44.14 ? O8 NTA 334 A 1 HETATM 7 O O9 NTA . . . F 4 25.301 71.462 60.16 1 40.38 ? O9 NTA 334 A 1 HETATM 8 C C NTA . . . F 4 27.174 75.481 58.217 1 31.06 ? C NTA 334 A 1 HETATM 9 C C11 NTA . . . F 4 25.112 74.761 55.609 1 17.95 ? C11 NTA 334 A 1 HETATM 10 O O12 NTA . . . F 4 26.236 74.231 55.524 1 18.52 ? O12 NTA 334 A 1 HETATM 11 O O13 NTA . . . F 4 24.528 75.418 54.802 1 13.47 ? O13 NTA 334 A 1 HETATM 12 O OXT NTA . . . F 4 27.672 76.549 58.202 1 28.91 ? OXT NTA 334 A 1 HETATM 13 O O NTA . . . F 4 27.629 74.451 57.792 1 34.54 ? O NTA 334 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #