data_1NFX # _model_server_result.job_id P0ZY5M2AanRXN7OxIJI1-A _model_server_result.datetime_utc '2024-12-22 06:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1NFX # _exptl.entry_id 1NFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NFX _cell.length_a 56.5 _cell.length_b 72.33 _cell.length_c 79.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc5 C CA CA . A CA 300 1_555 E O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc6 C CA CA . A CA 300 1_555 E O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NFX _atom_sites.fract_transf_matrix[1][1] 0.017699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 300 1 CA CA2 . D 4 RDR A 1 301 1 RDR RPR . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 6 HOH HOH . E 5 HOH A 7 308 7 HOH HOH . E 5 HOH A 8 309 8 HOH HOH . E 5 HOH A 9 310 9 HOH HOH . E 5 HOH A 10 311 11 HOH HOH . E 5 HOH A 11 312 12 HOH HOH . E 5 HOH A 12 313 13 HOH HOH . E 5 HOH A 13 314 14 HOH HOH . E 5 HOH A 14 315 15 HOH HOH . E 5 HOH A 15 316 16 HOH HOH . E 5 HOH A 16 317 17 HOH HOH . E 5 HOH A 17 318 18 HOH HOH . E 5 HOH A 18 319 19 HOH HOH . E 5 HOH A 19 320 20 HOH HOH . E 5 HOH A 20 321 22 HOH HOH . E 5 HOH A 21 322 23 HOH HOH . E 5 HOH A 22 323 24 HOH HOH . E 5 HOH A 23 324 25 HOH HOH . E 5 HOH A 24 325 26 HOH HOH . E 5 HOH A 25 326 27 HOH HOH . E 5 HOH A 26 327 28 HOH HOH . E 5 HOH A 27 328 29 HOH HOH . E 5 HOH A 28 329 30 HOH HOH . E 5 HOH A 29 330 31 HOH HOH . E 5 HOH A 30 331 32 HOH HOH . E 5 HOH A 31 332 33 HOH HOH . E 5 HOH A 32 333 34 HOH HOH . E 5 HOH A 33 334 36 HOH HOH . E 5 HOH A 34 335 38 HOH HOH . E 5 HOH A 35 336 39 HOH HOH . E 5 HOH A 36 337 40 HOH HOH . E 5 HOH A 37 338 41 HOH HOH . E 5 HOH A 38 339 42 HOH HOH . E 5 HOH A 39 340 43 HOH HOH . E 5 HOH A 40 341 45 HOH HOH . E 5 HOH A 41 342 46 HOH HOH . E 5 HOH A 42 343 47 HOH HOH . E 5 HOH A 43 344 48 HOH HOH . E 5 HOH A 44 345 50 HOH HOH . E 5 HOH A 45 346 51 HOH HOH . E 5 HOH A 46 347 52 HOH HOH . E 5 HOH A 47 348 53 HOH HOH . E 5 HOH A 48 349 54 HOH HOH . E 5 HOH A 49 350 55 HOH HOH . E 5 HOH A 50 351 56 HOH HOH . E 5 HOH A 51 352 57 HOH HOH . E 5 HOH A 52 353 58 HOH HOH . E 5 HOH A 53 354 59 HOH HOH . E 5 HOH A 54 355 61 HOH HOH . E 5 HOH A 55 356 62 HOH HOH . E 5 HOH A 56 357 63 HOH HOH . E 5 HOH A 57 358 65 HOH HOH . E 5 HOH A 58 359 66 HOH HOH . E 5 HOH A 59 360 69 HOH HOH . E 5 HOH A 60 361 70 HOH HOH . E 5 HOH A 61 362 72 HOH HOH . E 5 HOH A 62 363 73 HOH HOH . E 5 HOH A 63 364 74 HOH HOH . E 5 HOH A 64 365 76 HOH HOH . E 5 HOH A 65 366 79 HOH HOH . E 5 HOH A 66 367 80 HOH HOH . E 5 HOH A 67 368 82 HOH HOH . E 5 HOH A 68 369 83 HOH HOH . E 5 HOH A 69 370 84 HOH HOH . E 5 HOH A 70 371 85 HOH HOH . E 5 HOH A 71 372 86 HOH HOH . E 5 HOH A 72 373 88 HOH HOH . E 5 HOH A 73 374 89 HOH HOH . E 5 HOH A 74 375 90 HOH HOH . E 5 HOH A 75 376 91 HOH HOH . E 5 HOH A 76 377 92 HOH HOH . E 5 HOH A 77 378 93 HOH HOH . E 5 HOH A 78 379 94 HOH HOH . E 5 HOH A 79 380 95 HOH HOH . E 5 HOH A 80 381 96 HOH HOH . E 5 HOH A 81 382 97 HOH HOH . E 5 HOH A 82 383 99 HOH HOH . E 5 HOH A 83 384 100 HOH HOH . E 5 HOH A 84 385 101 HOH HOH . E 5 HOH A 85 386 102 HOH HOH . E 5 HOH A 86 387 104 HOH HOH . E 5 HOH A 87 388 107 HOH HOH . E 5 HOH A 88 389 108 HOH HOH . E 5 HOH A 89 390 109 HOH HOH . E 5 HOH A 90 391 110 HOH HOH . E 5 HOH A 91 392 111 HOH HOH . E 5 HOH A 92 393 116 HOH HOH . E 5 HOH A 93 394 117 HOH HOH . E 5 HOH A 94 395 119 HOH HOH . E 5 HOH A 95 396 121 HOH HOH . E 5 HOH A 96 397 122 HOH HOH . E 5 HOH A 97 398 123 HOH HOH . E 5 HOH A 98 399 124 HOH HOH . E 5 HOH A 99 400 125 HOH HOH . E 5 HOH A 100 401 127 HOH HOH . E 5 HOH A 101 402 128 HOH HOH . E 5 HOH A 102 403 129 HOH HOH . E 5 HOH A 103 404 130 HOH HOH . E 5 HOH A 104 405 131 HOH HOH . E 5 HOH A 105 406 132 HOH HOH . E 5 HOH A 106 407 133 HOH HOH . E 5 HOH A 107 408 134 HOH HOH . E 5 HOH A 108 409 136 HOH HOH . E 5 HOH A 109 410 137 HOH HOH . E 5 HOH A 110 411 141 HOH HOH . E 5 HOH A 111 412 142 HOH HOH . E 5 HOH A 112 413 143 HOH HOH . E 5 HOH A 113 414 144 HOH HOH . E 5 HOH A 114 415 146 HOH HOH . E 5 HOH A 115 416 147 HOH HOH . E 5 HOH A 116 417 148 HOH HOH . E 5 HOH A 117 418 149 HOH HOH . E 5 HOH A 118 419 151 HOH HOH . E 5 HOH A 119 420 153 HOH HOH . E 5 HOH A 120 421 154 HOH HOH . E 5 HOH A 121 422 155 HOH HOH . E 5 HOH A 122 423 156 HOH HOH . E 5 HOH A 123 424 157 HOH HOH . F 5 HOH B 1 52 10 HOH HOH . F 5 HOH B 2 53 21 HOH HOH . F 5 HOH B 3 54 35 HOH HOH . F 5 HOH B 4 55 37 HOH HOH . F 5 HOH B 5 56 44 HOH HOH . F 5 HOH B 6 57 49 HOH HOH . F 5 HOH B 7 58 60 HOH HOH . F 5 HOH B 8 59 64 HOH HOH . F 5 HOH B 9 60 67 HOH HOH . F 5 HOH B 10 61 68 HOH HOH . F 5 HOH B 11 62 71 HOH HOH . F 5 HOH B 12 63 75 HOH HOH . F 5 HOH B 13 64 77 HOH HOH . F 5 HOH B 14 65 78 HOH HOH . F 5 HOH B 15 66 81 HOH HOH . F 5 HOH B 16 67 87 HOH HOH . F 5 HOH B 17 68 98 HOH HOH . F 5 HOH B 18 69 103 HOH HOH . F 5 HOH B 19 70 105 HOH HOH . F 5 HOH B 20 71 106 HOH HOH . F 5 HOH B 21 72 112 HOH HOH . F 5 HOH B 22 73 113 HOH HOH . F 5 HOH B 23 74 114 HOH HOH . F 5 HOH B 24 75 115 HOH HOH . F 5 HOH B 25 76 118 HOH HOH . F 5 HOH B 26 77 120 HOH HOH . F 5 HOH B 27 78 126 HOH HOH . F 5 HOH B 28 79 135 HOH HOH . F 5 HOH B 29 80 138 HOH HOH . F 5 HOH B 30 81 139 HOH HOH . F 5 HOH B 31 82 140 HOH HOH . F 5 HOH B 32 83 145 HOH HOH . F 5 HOH B 33 84 150 HOH HOH . F 5 HOH B 34 85 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.572 _atom_site.Cartn_y 31.363 _atom_site.Cartn_z 29.333 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #