data_1NFY # _model_server_result.job_id Qom-tRH-ciHuAkatrI3l6Q _model_server_result.datetime_utc '2025-04-18 20:42:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1NFY # _exptl.entry_id 1NFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NFY _cell.length_a 55.783 _cell.length_b 71.828 _cell.length_c 79.045 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc5 C CA CA . A CA 300 1_555 E O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc6 C CA CA . A CA 300 1_555 E O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NFY _atom_sites.fract_transf_matrix[1][1] 0.017927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 300 1 CA CA2 . D 4 RTR A 1 301 1 RTR RPR . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 6 HOH HOH . E 5 HOH A 7 308 7 HOH HOH . E 5 HOH A 8 309 8 HOH HOH . E 5 HOH A 9 310 9 HOH HOH . E 5 HOH A 10 311 10 HOH HOH . E 5 HOH A 11 312 11 HOH HOH . E 5 HOH A 12 313 12 HOH HOH . E 5 HOH A 13 314 13 HOH HOH . E 5 HOH A 14 315 14 HOH HOH . E 5 HOH A 15 316 15 HOH HOH . E 5 HOH A 16 317 16 HOH HOH . E 5 HOH A 17 318 17 HOH HOH . E 5 HOH A 18 319 18 HOH HOH . E 5 HOH A 19 320 19 HOH HOH . E 5 HOH A 20 321 20 HOH HOH . E 5 HOH A 21 322 23 HOH HOH . E 5 HOH A 22 323 24 HOH HOH . E 5 HOH A 23 324 25 HOH HOH . E 5 HOH A 24 325 26 HOH HOH . E 5 HOH A 25 326 28 HOH HOH . E 5 HOH A 26 327 29 HOH HOH . E 5 HOH A 27 328 30 HOH HOH . E 5 HOH A 28 329 31 HOH HOH . E 5 HOH A 29 330 33 HOH HOH . E 5 HOH A 30 331 34 HOH HOH . E 5 HOH A 31 332 35 HOH HOH . E 5 HOH A 32 333 36 HOH HOH . E 5 HOH A 33 334 37 HOH HOH . E 5 HOH A 34 335 38 HOH HOH . E 5 HOH A 35 336 40 HOH HOH . E 5 HOH A 36 337 41 HOH HOH . E 5 HOH A 37 338 42 HOH HOH . E 5 HOH A 38 339 43 HOH HOH . E 5 HOH A 39 340 44 HOH HOH . E 5 HOH A 40 341 45 HOH HOH . E 5 HOH A 41 342 46 HOH HOH . E 5 HOH A 42 343 47 HOH HOH . E 5 HOH A 43 344 48 HOH HOH . E 5 HOH A 44 345 49 HOH HOH . E 5 HOH A 45 346 50 HOH HOH . E 5 HOH A 46 347 51 HOH HOH . E 5 HOH A 47 348 54 HOH HOH . E 5 HOH A 48 349 56 HOH HOH . E 5 HOH A 49 350 58 HOH HOH . E 5 HOH A 50 351 59 HOH HOH . E 5 HOH A 51 352 60 HOH HOH . E 5 HOH A 52 353 61 HOH HOH . E 5 HOH A 53 354 62 HOH HOH . E 5 HOH A 54 355 63 HOH HOH . E 5 HOH A 55 356 64 HOH HOH . E 5 HOH A 56 357 65 HOH HOH . E 5 HOH A 57 358 66 HOH HOH . E 5 HOH A 58 359 67 HOH HOH . E 5 HOH A 59 360 68 HOH HOH . E 5 HOH A 60 361 69 HOH HOH . E 5 HOH A 61 362 70 HOH HOH . E 5 HOH A 62 363 71 HOH HOH . E 5 HOH A 63 364 72 HOH HOH . E 5 HOH A 64 365 73 HOH HOH . E 5 HOH A 65 366 74 HOH HOH . E 5 HOH A 66 367 75 HOH HOH . E 5 HOH A 67 368 77 HOH HOH . E 5 HOH A 68 369 79 HOH HOH . E 5 HOH A 69 370 80 HOH HOH . E 5 HOH A 70 371 81 HOH HOH . E 5 HOH A 71 372 85 HOH HOH . E 5 HOH A 72 373 88 HOH HOH . E 5 HOH A 73 374 90 HOH HOH . E 5 HOH A 74 375 92 HOH HOH . E 5 HOH A 75 376 93 HOH HOH . E 5 HOH A 76 377 94 HOH HOH . E 5 HOH A 77 378 95 HOH HOH . E 5 HOH A 78 379 96 HOH HOH . E 5 HOH A 79 380 98 HOH HOH . E 5 HOH A 80 381 100 HOH HOH . E 5 HOH A 81 382 101 HOH HOH . E 5 HOH A 82 383 102 HOH HOH . E 5 HOH A 83 384 103 HOH HOH . E 5 HOH A 84 385 104 HOH HOH . E 5 HOH A 85 386 105 HOH HOH . E 5 HOH A 86 387 106 HOH HOH . E 5 HOH A 87 388 108 HOH HOH . E 5 HOH A 88 389 109 HOH HOH . E 5 HOH A 89 390 110 HOH HOH . E 5 HOH A 90 391 111 HOH HOH . E 5 HOH A 91 392 113 HOH HOH . E 5 HOH A 92 393 114 HOH HOH . E 5 HOH A 93 394 115 HOH HOH . E 5 HOH A 94 395 118 HOH HOH . E 5 HOH A 95 396 119 HOH HOH . E 5 HOH A 96 397 122 HOH HOH . E 5 HOH A 97 398 123 HOH HOH . E 5 HOH A 98 399 124 HOH HOH . E 5 HOH A 99 400 125 HOH HOH . E 5 HOH A 100 401 126 HOH HOH . E 5 HOH A 101 402 129 HOH HOH . E 5 HOH A 102 403 130 HOH HOH . E 5 HOH A 103 404 131 HOH HOH . E 5 HOH A 104 405 132 HOH HOH . E 5 HOH A 105 406 133 HOH HOH . E 5 HOH A 106 407 134 HOH HOH . E 5 HOH A 107 408 135 HOH HOH . E 5 HOH A 108 409 137 HOH HOH . E 5 HOH A 109 410 138 HOH HOH . E 5 HOH A 110 411 139 HOH HOH . E 5 HOH A 111 412 140 HOH HOH . E 5 HOH A 112 413 141 HOH HOH . E 5 HOH A 113 414 144 HOH HOH . E 5 HOH A 114 415 145 HOH HOH . E 5 HOH A 115 416 149 HOH HOH . E 5 HOH A 116 417 150 HOH HOH . E 5 HOH A 117 418 152 HOH HOH . E 5 HOH A 118 419 153 HOH HOH . E 5 HOH A 119 420 154 HOH HOH . E 5 HOH A 120 421 156 HOH HOH . E 5 HOH A 121 422 157 HOH HOH . E 5 HOH A 122 423 158 HOH HOH . E 5 HOH A 123 424 159 HOH HOH . E 5 HOH A 124 425 160 HOH HOH . E 5 HOH A 125 426 161 HOH HOH . E 5 HOH A 126 427 162 HOH HOH . E 5 HOH A 127 428 163 HOH HOH . E 5 HOH A 128 429 165 HOH HOH . E 5 HOH A 129 430 166 HOH HOH . F 5 HOH B 1 52 21 HOH HOH . F 5 HOH B 2 53 22 HOH HOH . F 5 HOH B 3 54 27 HOH HOH . F 5 HOH B 4 55 32 HOH HOH . F 5 HOH B 5 56 39 HOH HOH . F 5 HOH B 6 57 52 HOH HOH . F 5 HOH B 7 58 53 HOH HOH . F 5 HOH B 8 59 55 HOH HOH . F 5 HOH B 9 60 57 HOH HOH . F 5 HOH B 10 61 76 HOH HOH . F 5 HOH B 11 62 78 HOH HOH . F 5 HOH B 12 63 82 HOH HOH . F 5 HOH B 13 64 83 HOH HOH . F 5 HOH B 14 65 84 HOH HOH . F 5 HOH B 15 66 86 HOH HOH . F 5 HOH B 16 67 87 HOH HOH . F 5 HOH B 17 68 89 HOH HOH . F 5 HOH B 18 69 91 HOH HOH . F 5 HOH B 19 70 97 HOH HOH . F 5 HOH B 20 71 99 HOH HOH . F 5 HOH B 21 72 107 HOH HOH . F 5 HOH B 22 73 112 HOH HOH . F 5 HOH B 23 74 116 HOH HOH . F 5 HOH B 24 75 117 HOH HOH . F 5 HOH B 25 76 120 HOH HOH . F 5 HOH B 26 77 121 HOH HOH . F 5 HOH B 27 78 127 HOH HOH . F 5 HOH B 28 79 128 HOH HOH . F 5 HOH B 29 80 136 HOH HOH . F 5 HOH B 30 81 142 HOH HOH . F 5 HOH B 31 82 143 HOH HOH . F 5 HOH B 32 83 146 HOH HOH . F 5 HOH B 33 84 147 HOH HOH . F 5 HOH B 34 85 148 HOH HOH . F 5 HOH B 35 86 151 HOH HOH . F 5 HOH B 36 87 155 HOH HOH . F 5 HOH B 37 88 164 HOH HOH . F 5 HOH B 38 89 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.334 _atom_site.Cartn_y 31.231 _atom_site.Cartn_z 28.787 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #