data_1NG1 # _model_server_result.job_id CgACP76PUBeCpSSSzv7fAQ _model_server_result.datetime_utc '2025-07-12 23:07:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ng1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":951}' # _entry.id 1NG1 # _exptl.entry_id 1NG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NG1 _cell.length_a 100.072 _cell.length_b 100.072 _cell.length_c 73.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 11 A GLU 11 1_555 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A OE2 GLU 11 A GLU 11 1_555 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 A OE1 GLU 33 A GLU 33 1_555 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A OE2 GLU 33 A GLU 33 1_555 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc5 A OE2 GLU 46 A GLU 46 4_455 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc6 A OD1 ASP 50 A ASP 50 4_455 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc7 A OD2 ASP 50 A ASP 50 4_455 B CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 A OG1 THR 112 A THR 112 1_555 E MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc9 A NE2 HIS 261 A HIS 261 1_555 D CD CD . A CD 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 A OE2 GLU 285 A GLU 285 1_555 C CD CD . A CD 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc11 A OE1 GLU 285 A GLU 285 1_555 C CD CD . A CD 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc12 D CD CD . A CD 752 1_555 M O ACY . A ACY 952 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc13 D CD CD . A CD 752 1_555 M OXT ACY . A ACY 952 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc14 D CD CD . A CD 752 1_555 O O HOH . A HOH 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc15 D CD CD . A CD 752 1_555 O O HOH . A HOH 1127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc16 G O3B GDP . A GDP 900 1_555 E MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc17 E MG MG . A MG 902 1_555 O O HOH . A HOH 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc18 E MG MG . A MG 902 1_555 O O HOH . A HOH 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc19 E MG MG . A MG 902 1_555 O O HOH . A HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc20 E MG MG . A MG 902 1_555 O O HOH . A HOH 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc21 F MG MG . A MG 912 1_555 O O HOH . A HOH 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc22 F MG MG . A MG 912 1_555 O O HOH . A HOH 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc23 F MG MG . A MG 912 1_555 O O HOH . A HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc24 F MG MG . A MG 912 1_555 O O HOH . A HOH 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc25 F MG MG . A MG 912 1_555 O O HOH . A HOH 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc26 F MG MG . A MG 912 1_555 O O HOH . A HOH 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 1NG1 _atom_sites.fract_transf_matrix[1][1] 0.009993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 701 701 CD CD . C 2 CD A 1 751 751 CD CD . D 2 CD A 1 752 752 CD CD . E 3 MG A 1 902 902 MG MO4 . F 3 MG A 1 912 912 MG MO6 . G 4 GDP A 1 900 900 GDP GDP . H 5 EDO A 1 970 970 EDO EDO . I 5 EDO A 1 971 971 EDO EDO . J 5 EDO A 1 972 972 EDO EDO . K 6 ACY A 1 950 950 ACY ACY . L 6 ACY A 1 951 951 ACY ACY . M 6 ACY A 1 952 952 ACY ACY . N 6 ACY A 1 953 953 ACY ACY . O 7 HOH A 1 973 1 HOH HOH . O 7 HOH A 2 974 2 HOH HOH . O 7 HOH A 3 975 3 HOH HOH . O 7 HOH A 4 976 4 HOH HOH . O 7 HOH A 5 977 5 HOH HOH . O 7 HOH A 6 978 6 HOH HOH . O 7 HOH A 7 979 7 HOH HOH . O 7 HOH A 8 980 8 HOH HOH . O 7 HOH A 9 981 9 HOH HOH . O 7 HOH A 10 982 10 HOH HOH . O 7 HOH A 11 983 11 HOH HOH . O 7 HOH A 12 984 12 HOH HOH . O 7 HOH A 13 985 13 HOH HOH . O 7 HOH A 14 986 15 HOH HOH . O 7 HOH A 15 987 16 HOH HOH . O 7 HOH A 16 988 20 HOH HOH . O 7 HOH A 17 989 22 HOH HOH . O 7 HOH A 18 990 23 HOH HOH . O 7 HOH A 19 991 25 HOH HOH . O 7 HOH A 20 992 26 HOH HOH . O 7 HOH A 21 993 27 HOH HOH . O 7 HOH A 22 994 28 HOH HOH . O 7 HOH A 23 995 29 HOH HOH . O 7 HOH A 24 996 30 HOH HOH . O 7 HOH A 25 997 31 HOH HOH . O 7 HOH A 26 998 32 HOH HOH . O 7 HOH A 27 999 37 HOH HOH . O 7 HOH A 28 1000 38 HOH HOH . O 7 HOH A 29 1001 39 HOH HOH . O 7 HOH A 30 1002 40 HOH HOH . O 7 HOH A 31 1003 42 HOH HOH . O 7 HOH A 32 1004 43 HOH HOH . O 7 HOH A 33 1005 44 HOH HOH . O 7 HOH A 34 1006 45 HOH HOH . O 7 HOH A 35 1007 46 HOH HOH . O 7 HOH A 36 1008 47 HOH HOH . O 7 HOH A 37 1009 48 HOH HOH . O 7 HOH A 38 1010 49 HOH HOH . O 7 HOH A 39 1011 50 HOH HOH . O 7 HOH A 40 1012 51 HOH HOH . O 7 HOH A 41 1013 52 HOH HOH . O 7 HOH A 42 1014 53 HOH HOH . O 7 HOH A 43 1015 54 HOH HOH . O 7 HOH A 44 1016 55 HOH HOH . O 7 HOH A 45 1017 56 HOH HOH . O 7 HOH A 46 1018 57 HOH HOH . O 7 HOH A 47 1019 59 HOH HOH . O 7 HOH A 48 1020 61 HOH HOH . O 7 HOH A 49 1021 62 HOH HOH . O 7 HOH A 50 1022 63 HOH HOH . O 7 HOH A 51 1023 64 HOH HOH . O 7 HOH A 52 1024 65 HOH HOH . O 7 HOH A 53 1025 66 HOH HOH . O 7 HOH A 54 1026 67 HOH HOH . O 7 HOH A 55 1027 68 HOH HOH . O 7 HOH A 56 1028 69 HOH HOH . O 7 HOH A 57 1029 70 HOH HOH . O 7 HOH A 58 1030 71 HOH HOH . O 7 HOH A 59 1031 72 HOH HOH . O 7 HOH A 60 1032 75 HOH HOH . O 7 HOH A 61 1033 76 HOH HOH . O 7 HOH A 62 1034 77 HOH HOH . O 7 HOH A 63 1035 78 HOH HOH . O 7 HOH A 64 1036 79 HOH HOH . O 7 HOH A 65 1037 80 HOH HOH . O 7 HOH A 66 1038 81 HOH HOH . O 7 HOH A 67 1039 82 HOH HOH . O 7 HOH A 68 1040 84 HOH HOH . O 7 HOH A 69 1041 85 HOH HOH . O 7 HOH A 70 1042 86 HOH HOH . O 7 HOH A 71 1043 87 HOH HOH . O 7 HOH A 72 1044 88 HOH HOH . O 7 HOH A 73 1045 89 HOH HOH . O 7 HOH A 74 1046 90 HOH HOH . O 7 HOH A 75 1047 91 HOH HOH . O 7 HOH A 76 1048 92 HOH HOH . O 7 HOH A 77 1049 93 HOH HOH . O 7 HOH A 78 1050 94 HOH HOH . O 7 HOH A 79 1051 96 HOH HOH . O 7 HOH A 80 1052 97 HOH HOH . O 7 HOH A 81 1053 98 HOH HOH . O 7 HOH A 82 1054 99 HOH HOH . O 7 HOH A 83 1055 100 HOH HOH . O 7 HOH A 84 1056 101 HOH HOH . O 7 HOH A 85 1057 103 HOH HOH . O 7 HOH A 86 1058 104 HOH HOH . O 7 HOH A 87 1059 105 HOH HOH . O 7 HOH A 88 1060 106 HOH HOH . O 7 HOH A 89 1061 107 HOH HOH . O 7 HOH A 90 1062 108 HOH HOH . O 7 HOH A 91 1063 109 HOH HOH . O 7 HOH A 92 1064 111 HOH HOH . O 7 HOH A 93 1065 112 HOH HOH . O 7 HOH A 94 1066 113 HOH HOH . O 7 HOH A 95 1067 114 HOH HOH . O 7 HOH A 96 1068 115 HOH HOH . O 7 HOH A 97 1069 116 HOH HOH . O 7 HOH A 98 1070 117 HOH HOH . O 7 HOH A 99 1071 118 HOH HOH . O 7 HOH A 100 1072 121 HOH HOH . O 7 HOH A 101 1073 122 HOH HOH . O 7 HOH A 102 1074 125 HOH HOH . O 7 HOH A 103 1075 126 HOH HOH . O 7 HOH A 104 1076 127 HOH HOH . O 7 HOH A 105 1077 128 HOH HOH . O 7 HOH A 106 1078 129 HOH HOH . O 7 HOH A 107 1079 130 HOH HOH . O 7 HOH A 108 1080 131 HOH HOH . O 7 HOH A 109 1081 132 HOH HOH . O 7 HOH A 110 1082 133 HOH HOH . O 7 HOH A 111 1083 134 HOH HOH . O 7 HOH A 112 1084 135 HOH HOH . O 7 HOH A 113 1085 136 HOH HOH . O 7 HOH A 114 1086 137 HOH HOH . O 7 HOH A 115 1087 138 HOH HOH . O 7 HOH A 116 1088 139 HOH HOH . O 7 HOH A 117 1089 142 HOH HOH . O 7 HOH A 118 1090 143 HOH HOH . O 7 HOH A 119 1091 144 HOH HOH . O 7 HOH A 120 1092 145 HOH HOH . O 7 HOH A 121 1093 146 HOH HOH . O 7 HOH A 122 1094 148 HOH HOH . O 7 HOH A 123 1095 151 HOH HOH . O 7 HOH A 124 1096 153 HOH HOH . O 7 HOH A 125 1097 154 HOH HOH . O 7 HOH A 126 1098 155 HOH HOH . O 7 HOH A 127 1099 156 HOH HOH . O 7 HOH A 128 1100 157 HOH HOH . O 7 HOH A 129 1101 158 HOH HOH . O 7 HOH A 130 1102 159 HOH HOH . O 7 HOH A 131 1103 161 HOH HOH . O 7 HOH A 132 1104 162 HOH HOH . O 7 HOH A 133 1105 163 HOH HOH . O 7 HOH A 134 1106 164 HOH HOH . O 7 HOH A 135 1107 165 HOH HOH . O 7 HOH A 136 1108 167 HOH HOH . O 7 HOH A 137 1109 168 HOH HOH . O 7 HOH A 138 1110 170 HOH HOH . O 7 HOH A 139 1111 171 HOH HOH . O 7 HOH A 140 1112 172 HOH HOH . O 7 HOH A 141 1113 173 HOH HOH . O 7 HOH A 142 1114 174 HOH HOH . O 7 HOH A 143 1115 175 HOH HOH . O 7 HOH A 144 1116 176 HOH HOH . O 7 HOH A 145 1117 177 HOH HOH . O 7 HOH A 146 1118 178 HOH HOH . O 7 HOH A 147 1119 179 HOH HOH . O 7 HOH A 148 1120 180 HOH HOH . O 7 HOH A 149 1121 181 HOH HOH . O 7 HOH A 150 1122 182 HOH HOH . O 7 HOH A 151 1123 183 HOH HOH . O 7 HOH A 152 1124 184 HOH HOH . O 7 HOH A 153 1125 185 HOH HOH . O 7 HOH A 154 1126 188 HOH HOH . O 7 HOH A 155 1127 189 HOH HOH . O 7 HOH A 156 1128 190 HOH HOH . O 7 HOH A 157 1129 191 HOH HOH . O 7 HOH A 158 1130 192 HOH HOH . O 7 HOH A 159 1131 193 HOH HOH . O 7 HOH A 160 1132 195 HOH HOH . O 7 HOH A 161 1133 196 HOH HOH . O 7 HOH A 162 1134 197 HOH HOH . O 7 HOH A 163 1135 198 HOH HOH . O 7 HOH A 164 1136 199 HOH HOH . O 7 HOH A 165 1137 200 HOH HOH . O 7 HOH A 166 1138 902 HOH MO4 . O 7 HOH A 167 1139 902 HOH MO4 . O 7 HOH A 168 1140 902 HOH MO4 . O 7 HOH A 169 1141 902 HOH MO4 . O 7 HOH A 170 1142 912 HOH MO6 . O 7 HOH A 171 1143 912 HOH MO6 . O 7 HOH A 172 1144 912 HOH MO6 . O 7 HOH A 173 1145 912 HOH MO6 . O 7 HOH A 174 1146 912 HOH MO6 . O 7 HOH A 175 1147 912 HOH MO6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . L 6 2.403 49.898 4.146 1 57.89 ? C ACY 951 A 1 HETATM 2 O O ACY . . . L 6 2.415 51.172 3.988 1 55.89 ? O ACY 951 A 1 HETATM 3 O OXT ACY . . . L 6 1.958 49.055 3.347 1 56.08 ? OXT ACY 951 A 1 HETATM 4 C CH3 ACY . . . L 6 3.01 49.381 5.473 1 55.25 ? CH3 ACY 951 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #