data_1NG3 # _model_server_result.job_id h-vGs7mGXwBsxb3aOGe2lQ _model_server_result.datetime_utc '2024-11-27 15:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ng3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1NG3 # _exptl.entry_id 1NG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NG3 _cell.length_a 139.378 _cell.length_b 139.378 _cell.length_c 208.155 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 69.689 120.704889 173.4625 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 97 n n PA O2A FAD sing 98 n n PA O5B FAD sing 99 n n PA O3P FAD sing 100 n n O2A HOA2 FAD sing 101 n n O5B C5B FAD sing 102 n n C5B C4B FAD sing 103 n n C5B H51A FAD sing 104 n n C5B H52A FAD sing 105 n n C4B O4B FAD sing 106 n n C4B C3B FAD sing 107 n n C4B H4B FAD sing 108 n n O4B C1B FAD sing 109 n n C3B O3B FAD sing 110 n n C3B C2B FAD sing 111 n n C3B H3B FAD sing 112 n n O3B HO3A FAD sing 113 n n C2B O2B FAD sing 114 n n C2B C1B FAD sing 115 n n C2B H2B FAD sing 116 n n O2B HO2A FAD sing 117 n n C1B N9A FAD sing 118 n n C1B H1B FAD sing 119 n n N9A C8A FAD sing 120 n y N9A C4A FAD sing 121 n y C8A N7A FAD doub 122 n y C8A H8A FAD sing 123 n n N7A C5A FAD sing 124 n y C5A C6A FAD sing 125 n y C5A C4A FAD doub 126 n y C6A N6A FAD sing 127 n n C6A N1A FAD doub 128 n y N6A H61A FAD sing 129 n n N6A H62A FAD sing 130 n n N1A C2A FAD sing 131 n y C2A N3A FAD doub 132 n y C2A H2A FAD sing 133 n n N3A C4A FAD sing 134 n y N1 C2 FAD sing 135 n n N1 C10 FAD doub 136 n n C2 O2 FAD doub 137 n n C2 N3 FAD sing 138 n n N3 C4 FAD sing 139 n n N3 HN3 FAD sing 140 n n C4 O4 FAD doub 141 n n C4 C4X FAD sing 142 n n C4X N5 FAD doub 143 n n C4X C10 FAD sing 144 n n N5 C5X FAD sing 145 n n C5X C6 FAD doub 146 n y C5X C9A FAD sing 147 n y C6 C7 FAD sing 148 n y C6 H6 FAD sing 149 n n C7 C7M FAD sing 150 n n C7 C8 FAD doub 151 n y C7M HM71 FAD sing 152 n n C7M HM72 FAD sing 153 n n C7M HM73 FAD sing 154 n n C8 C8M FAD sing 155 n n C8 C9 FAD sing 156 n y C8M HM81 FAD sing 157 n n C8M HM82 FAD sing 158 n n C8M HM83 FAD sing 159 n n C9 C9A FAD doub 160 n y C9 H9 FAD sing 161 n n C9A N10 FAD sing 162 n n N10 C10 FAD sing 163 n n N10 C1' FAD sing 164 n n C1' C2' FAD sing 165 n n C1' "H1'1" FAD sing 166 n n C1' "H1'2" FAD sing 167 n n C2' O2' FAD sing 168 n n C2' C3' FAD sing 169 n n C2' H2' FAD sing 170 n n O2' HO2' FAD sing 171 n n C3' O3' FAD sing 172 n n C3' C4' FAD sing 173 n n C3' H3' FAD sing 174 n n O3' HO3' FAD sing 175 n n C4' O4' FAD sing 176 n n C4' C5' FAD sing 177 n n C4' H4' FAD sing 178 n n O4' HO4' FAD sing 179 n n C5' O5' FAD sing 180 n n C5' "H5'1" FAD sing 181 n n C5' "H5'2" FAD sing 182 n n O5' P FAD sing 183 n n P O1P FAD doub 184 n n P O2P FAD sing 185 n n P O3P FAD sing 186 n n O2P HOP2 FAD sing 187 n n # _atom_sites.entry_id 1NG3 _atom_sites.fract_transf_matrix[1][1] 0.007175 _atom_sites.fract_transf_matrix[1][2] 0.004142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 402 402 PO4 PO4 . D 3 FAD A 1 400 400 FAD FAD . E 4 AAC A 1 401 401 AAC AAC . F 3 FAD B 1 500 400 FAD FAD . G 4 AAC B 1 501 401 AAC AAC . H 5 HOH A 1 403 1 HOH TIP . H 5 HOH A 2 404 4 HOH TIP . H 5 HOH A 3 405 9 HOH TIP . H 5 HOH A 4 406 10 HOH TIP . H 5 HOH A 5 407 12 HOH TIP . H 5 HOH A 6 408 13 HOH TIP . H 5 HOH A 7 409 14 HOH TIP . H 5 HOH A 8 410 19 HOH TIP . H 5 HOH A 9 411 21 HOH TIP . H 5 HOH A 10 412 22 HOH TIP . H 5 HOH A 11 413 23 HOH TIP . H 5 HOH A 12 414 24 HOH TIP . H 5 HOH A 13 415 25 HOH TIP . H 5 HOH A 14 416 27 HOH TIP . H 5 HOH A 15 417 30 HOH TIP . H 5 HOH A 16 418 32 HOH TIP . H 5 HOH A 17 419 33 HOH TIP . H 5 HOH A 18 420 35 HOH TIP . H 5 HOH A 19 421 37 HOH TIP . H 5 HOH A 20 422 39 HOH TIP . H 5 HOH A 21 423 43 HOH TIP . H 5 HOH A 22 424 44 HOH TIP . H 5 HOH A 23 425 48 HOH TIP . H 5 HOH A 24 426 51 HOH TIP . H 5 HOH A 25 427 53 HOH TIP . H 5 HOH A 26 428 56 HOH TIP . H 5 HOH A 27 429 60 HOH TIP . H 5 HOH A 28 430 64 HOH TIP . H 5 HOH A 29 431 65 HOH TIP . H 5 HOH A 30 432 66 HOH TIP . H 5 HOH A 31 433 67 HOH TIP . H 5 HOH A 32 434 68 HOH TIP . H 5 HOH A 33 435 70 HOH TIP . H 5 HOH A 34 436 72 HOH TIP . H 5 HOH A 35 437 74 HOH TIP . H 5 HOH A 36 438 76 HOH TIP . H 5 HOH A 37 439 77 HOH TIP . H 5 HOH A 38 440 78 HOH TIP . H 5 HOH A 39 441 79 HOH TIP . H 5 HOH A 40 442 81 HOH TIP . H 5 HOH A 41 443 83 HOH TIP . H 5 HOH A 42 444 84 HOH TIP . H 5 HOH A 43 445 85 HOH TIP . H 5 HOH A 44 446 88 HOH TIP . H 5 HOH A 45 447 91 HOH TIP . H 5 HOH A 46 448 92 HOH TIP . H 5 HOH A 47 449 95 HOH TIP . H 5 HOH A 48 450 99 HOH TIP . H 5 HOH A 49 451 101 HOH TIP . H 5 HOH A 50 452 102 HOH TIP . H 5 HOH A 51 453 103 HOH TIP . H 5 HOH A 52 454 104 HOH TIP . H 5 HOH A 53 455 107 HOH TIP . I 5 HOH B 1 502 2 HOH TIP . I 5 HOH B 2 503 3 HOH TIP . I 5 HOH B 3 504 5 HOH TIP . I 5 HOH B 4 505 6 HOH TIP . I 5 HOH B 5 506 7 HOH TIP . I 5 HOH B 6 507 8 HOH TIP . I 5 HOH B 7 508 11 HOH TIP . I 5 HOH B 8 509 15 HOH TIP . I 5 HOH B 9 510 16 HOH TIP . I 5 HOH B 10 511 17 HOH TIP . I 5 HOH B 11 512 18 HOH TIP . I 5 HOH B 12 513 20 HOH TIP . I 5 HOH B 13 514 26 HOH TIP . I 5 HOH B 14 515 28 HOH TIP . I 5 HOH B 15 516 29 HOH TIP . I 5 HOH B 16 517 31 HOH TIP . I 5 HOH B 17 518 34 HOH TIP . I 5 HOH B 18 519 36 HOH TIP . I 5 HOH B 19 520 38 HOH TIP . I 5 HOH B 20 521 40 HOH TIP . I 5 HOH B 21 522 41 HOH TIP . I 5 HOH B 22 523 42 HOH TIP . I 5 HOH B 23 524 45 HOH TIP . I 5 HOH B 24 525 46 HOH TIP . I 5 HOH B 25 526 47 HOH TIP . I 5 HOH B 26 527 49 HOH TIP . I 5 HOH B 27 528 50 HOH TIP . I 5 HOH B 28 529 52 HOH TIP . I 5 HOH B 29 530 54 HOH TIP . I 5 HOH B 30 531 55 HOH TIP . I 5 HOH B 31 532 57 HOH TIP . I 5 HOH B 32 533 58 HOH TIP . I 5 HOH B 33 534 59 HOH TIP . I 5 HOH B 34 535 61 HOH TIP . I 5 HOH B 35 536 62 HOH TIP . I 5 HOH B 36 537 63 HOH TIP . I 5 HOH B 37 538 69 HOH TIP . I 5 HOH B 38 539 71 HOH TIP . I 5 HOH B 39 540 73 HOH TIP . I 5 HOH B 40 541 75 HOH TIP . I 5 HOH B 41 542 80 HOH TIP . I 5 HOH B 42 543 82 HOH TIP . I 5 HOH B 43 544 86 HOH TIP . I 5 HOH B 44 545 87 HOH TIP . I 5 HOH B 45 546 89 HOH TIP . I 5 HOH B 46 547 90 HOH TIP . I 5 HOH B 47 548 93 HOH TIP . I 5 HOH B 48 549 94 HOH TIP . I 5 HOH B 49 550 96 HOH TIP . I 5 HOH B 50 551 97 HOH TIP . I 5 HOH B 51 552 98 HOH TIP . I 5 HOH B 52 553 100 HOH TIP . I 5 HOH B 53 554 105 HOH TIP . I 5 HOH B 54 555 106 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 3 35.413 46.826 67.544 1 25.19 ? PA FAD 400 A 1 HETATM 2 O O1A FAD . . . D 3 35.885 45.85 68.631 1 29.44 ? O1A FAD 400 A 1 HETATM 3 O O2A FAD . . . D 3 35.966 48.227 67.548 1 27.76 ? O2A FAD 400 A 1 HETATM 4 O O5B FAD . . . D 3 33.835 46.942 67.601 1 28.21 ? O5B FAD 400 A 1 HETATM 5 C C5B FAD . . . D 3 32.991 45.854 67.251 1 27.72 ? C5B FAD 400 A 1 HETATM 6 C C4B FAD . . . D 3 31.673 46.45 67.544 1 28.76 ? C4B FAD 400 A 1 HETATM 7 O O4B FAD . . . D 3 30.555 45.556 67.301 1 29.12 ? O4B FAD 400 A 1 HETATM 8 C C3B FAD . . . D 3 31.515 46.946 69.019 1 27.61 ? C3B FAD 400 A 1 HETATM 9 O O3B FAD . . . D 3 30.929 48.241 68.947 1 33.86 ? O3B FAD 400 A 1 HETATM 10 C C2B FAD . . . D 3 30.678 45.904 69.591 1 28.73 ? C2B FAD 400 A 1 HETATM 11 O O2B FAD . . . D 3 29.987 46.184 70.755 1 29.78 ? O2B FAD 400 A 1 HETATM 12 C C1B FAD . . . D 3 29.72 45.546 68.448 1 29.38 ? C1B FAD 400 A 1 HETATM 13 N N9A FAD . . . D 3 29.004 44.286 68.516 1 29 ? N9A FAD 400 A 1 HETATM 14 C C8A FAD . . . D 3 29.399 42.989 68.936 1 30.54 ? C8A FAD 400 A 1 HETATM 15 N N7A FAD . . . D 3 28.45 42.087 68.863 1 33.02 ? N7A FAD 400 A 1 HETATM 16 C C5A FAD . . . D 3 27.339 42.777 68.375 1 31.3 ? C5A FAD 400 A 1 HETATM 17 C C6A FAD . . . D 3 26.004 42.404 68.072 1 31.77 ? C6A FAD 400 A 1 HETATM 18 N N6A FAD . . . D 3 25.545 41.167 68.249 1 30.41 ? N6A FAD 400 A 1 HETATM 19 N N1A FAD . . . D 3 25.143 43.379 67.587 1 31.8 ? N1A FAD 400 A 1 HETATM 20 C C2A FAD . . . D 3 25.57 44.644 67.399 1 31.63 ? C2A FAD 400 A 1 HETATM 21 N N3A FAD . . . D 3 26.872 45.098 67.676 1 31.47 ? N3A FAD 400 A 1 HETATM 22 C C4A FAD . . . D 3 27.67 44.027 68.167 1 30.04 ? C4A FAD 400 A 1 HETATM 23 N N1 FAD . . . D 3 44.928 49.251 65.009 1 20.92 ? N1 FAD 400 A 1 HETATM 24 C C2 FAD . . . D 3 45.561 50.149 64.175 1 21.31 ? C2 FAD 400 A 1 HETATM 25 O O2 FAD . . . D 3 45.289 50.208 62.965 1 23.35 ? O2 FAD 400 A 1 HETATM 26 N N3 FAD . . . D 3 46.523 51.002 64.716 1 20.54 ? N3 FAD 400 A 1 HETATM 27 C C4 FAD . . . D 3 46.924 51.035 66.075 1 19.13 ? C4 FAD 400 A 1 HETATM 28 O O4 FAD . . . D 3 47.818 51.872 66.448 1 19.57 ? O4 FAD 400 A 1 HETATM 29 C C4X FAD . . . D 3 46.273 50.113 66.887 1 18.55 ? C4X FAD 400 A 1 HETATM 30 N N5 FAD . . . D 3 46.644 50.097 68.284 1 18.83 ? N5 FAD 400 A 1 HETATM 31 C C5X FAD . . . D 3 45.965 49.158 69.118 1 17.57 ? C5X FAD 400 A 1 HETATM 32 C C6 FAD . . . D 3 46.271 49.072 70.498 1 18.66 ? C6 FAD 400 A 1 HETATM 33 C C7 FAD . . . D 3 45.616 48.172 71.39 1 18.74 ? C7 FAD 400 A 1 HETATM 34 C C7M FAD . . . D 3 46.013 48.143 72.857 1 15.58 ? C7M FAD 400 A 1 HETATM 35 C C8 FAD . . . D 3 44.585 47.321 70.86 1 19.22 ? C8 FAD 400 A 1 HETATM 36 C C8M FAD . . . D 3 43.797 46.333 71.722 1 17.03 ? C8M FAD 400 A 1 HETATM 37 C C9 FAD . . . D 3 44.259 47.363 69.513 1 16.44 ? C9 FAD 400 A 1 HETATM 38 C C9A FAD . . . D 3 44.924 48.241 68.616 1 19.09 ? C9A FAD 400 A 1 HETATM 39 N N10 FAD . . . D 3 44.635 48.346 67.149 1 19.42 ? N10 FAD 400 A 1 HETATM 40 C C10 FAD . . . D 3 45.281 49.243 66.334 1 18.34 ? C10 FAD 400 A 1 HETATM 41 C C1' FAD . . . D 3 43.632 47.452 66.666 1 21.26 ? C1' FAD 400 A 1 HETATM 42 C C2' FAD . . . D 3 42.292 48.06 66.412 1 24.63 ? C2' FAD 400 A 1 HETATM 43 O O2' FAD . . . D 3 41.881 48.626 67.684 1 24.8 ? O2' FAD 400 A 1 HETATM 44 C C3' FAD . . . D 3 41.214 47.094 66.002 1 27.46 ? C3' FAD 400 A 1 HETATM 45 O O3' FAD . . . D 3 41.572 46.327 64.839 1 27.15 ? O3' FAD 400 A 1 HETATM 46 C C4' FAD . . . D 3 39.87 47.731 65.641 1 26.09 ? C4' FAD 400 A 1 HETATM 47 O O4' FAD . . . D 3 39.473 48.52 66.788 1 27.34 ? O4' FAD 400 A 1 HETATM 48 C C5' FAD . . . D 3 38.789 46.781 65.362 1 25.16 ? C5' FAD 400 A 1 HETATM 49 O O5' FAD . . . D 3 37.62 47.496 65.026 1 27.58 ? O5' FAD 400 A 1 HETATM 50 P P FAD . . . D 3 36.248 46.793 64.736 1 28.41 ? P FAD 400 A 1 HETATM 51 O O1P FAD . . . D 3 35.356 47.853 64.366 1 29.51 ? O1P FAD 400 A 1 HETATM 52 O O2P FAD . . . D 3 36.48 45.677 63.75 1 32.8 ? O2P FAD 400 A 1 HETATM 53 O O3P FAD . . . D 3 35.803 46.174 66.152 1 28.45 ? O3P FAD 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 53 #