data_1NGA # _model_server_result.job_id DmV-EPurhBOBNaSFypRfpA _model_server_result.datetime_utc '2024-10-18 16:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":487}' # _entry.id 1NGA # _exptl.entry_id 1NGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NGA _cell.length_a 145.3 _cell.length_b 65 _cell.length_c 46.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2B ADP . A ADP 486 1_555 B MG MG . A MG 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 B MG MG . A MG 487 1_555 D O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 B MG MG . A MG 487 1_555 D O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 B MG MG . A MG 487 1_555 D O HOH . A HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 B MG MG . A MG 487 1_555 D O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc6 B MG MG . A MG 487 1_555 D O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NGA _atom_sites.fract_transf_matrix[1][1] 0.006882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 487 487 MG MG . C 3 ADP A 1 486 486 ADP ADP . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 512 512 HOH HOH . D 4 HOH A 12 513 513 HOH HOH . D 4 HOH A 13 514 514 HOH HOH . D 4 HOH A 14 515 515 HOH HOH . D 4 HOH A 15 516 516 HOH HOH . D 4 HOH A 16 517 517 HOH HOH . D 4 HOH A 17 518 518 HOH HOH . D 4 HOH A 18 519 519 HOH HOH . D 4 HOH A 19 520 520 HOH HOH . D 4 HOH A 20 521 521 HOH HOH . D 4 HOH A 21 522 522 HOH HOH . D 4 HOH A 22 523 523 HOH HOH . D 4 HOH A 23 524 524 HOH HOH . D 4 HOH A 24 525 525 HOH HOH . D 4 HOH A 25 526 526 HOH HOH . D 4 HOH A 26 527 527 HOH HOH . D 4 HOH A 27 528 528 HOH HOH . D 4 HOH A 28 529 529 HOH HOH . D 4 HOH A 29 530 530 HOH HOH . D 4 HOH A 30 531 531 HOH HOH . D 4 HOH A 31 532 532 HOH HOH . D 4 HOH A 32 533 533 HOH HOH . D 4 HOH A 33 534 534 HOH HOH . D 4 HOH A 34 535 535 HOH HOH . D 4 HOH A 35 536 536 HOH HOH . D 4 HOH A 36 537 537 HOH HOH . D 4 HOH A 37 538 538 HOH HOH . D 4 HOH A 38 539 539 HOH HOH . D 4 HOH A 39 540 540 HOH HOH . D 4 HOH A 40 541 541 HOH HOH . D 4 HOH A 41 543 543 HOH HOH . D 4 HOH A 42 544 544 HOH HOH . D 4 HOH A 43 545 545 HOH HOH . D 4 HOH A 44 546 546 HOH HOH . D 4 HOH A 45 547 547 HOH HOH . D 4 HOH A 46 548 548 HOH HOH . D 4 HOH A 47 549 549 HOH HOH . D 4 HOH A 48 550 550 HOH HOH . D 4 HOH A 49 551 551 HOH HOH . D 4 HOH A 50 552 552 HOH HOH . D 4 HOH A 51 553 553 HOH HOH . D 4 HOH A 52 554 554 HOH HOH . D 4 HOH A 53 555 555 HOH HOH . D 4 HOH A 54 556 556 HOH HOH . D 4 HOH A 55 557 557 HOH HOH . D 4 HOH A 56 558 558 HOH HOH . D 4 HOH A 57 559 559 HOH HOH . D 4 HOH A 58 560 560 HOH HOH . D 4 HOH A 59 561 561 HOH HOH . D 4 HOH A 60 562 562 HOH HOH . D 4 HOH A 61 563 563 HOH HOH . D 4 HOH A 62 564 564 HOH HOH . D 4 HOH A 63 565 565 HOH HOH . D 4 HOH A 64 566 566 HOH HOH . D 4 HOH A 65 567 567 HOH HOH . D 4 HOH A 66 568 568 HOH HOH . D 4 HOH A 67 569 569 HOH HOH . D 4 HOH A 68 570 570 HOH HOH . D 4 HOH A 69 571 571 HOH HOH . D 4 HOH A 70 572 572 HOH HOH . D 4 HOH A 71 573 573 HOH HOH . D 4 HOH A 72 574 574 HOH HOH . D 4 HOH A 73 575 575 HOH HOH . D 4 HOH A 74 576 576 HOH HOH . D 4 HOH A 75 577 577 HOH HOH . D 4 HOH A 76 578 578 HOH HOH . D 4 HOH A 77 579 579 HOH HOH . D 4 HOH A 78 580 580 HOH HOH . D 4 HOH A 79 581 581 HOH HOH . D 4 HOH A 80 582 582 HOH HOH . D 4 HOH A 81 583 583 HOH HOH . D 4 HOH A 82 584 584 HOH HOH . D 4 HOH A 83 585 585 HOH HOH . D 4 HOH A 84 586 586 HOH HOH . D 4 HOH A 85 587 587 HOH HOH . D 4 HOH A 86 588 588 HOH HOH . D 4 HOH A 87 589 589 HOH HOH . D 4 HOH A 88 590 590 HOH HOH . D 4 HOH A 89 591 591 HOH HOH . D 4 HOH A 90 592 592 HOH HOH . D 4 HOH A 91 593 593 HOH HOH . D 4 HOH A 92 594 594 HOH HOH . D 4 HOH A 93 595 595 HOH HOH . D 4 HOH A 94 596 596 HOH HOH . D 4 HOH A 95 597 597 HOH HOH . D 4 HOH A 96 598 598 HOH HOH . D 4 HOH A 97 599 599 HOH HOH . D 4 HOH A 98 600 600 HOH HOH . D 4 HOH A 99 601 601 HOH HOH . D 4 HOH A 100 602 602 HOH HOH . D 4 HOH A 101 603 603 HOH HOH . D 4 HOH A 102 604 604 HOH HOH . D 4 HOH A 103 605 605 HOH HOH . D 4 HOH A 104 606 606 HOH HOH . D 4 HOH A 105 607 607 HOH HOH . D 4 HOH A 106 608 608 HOH HOH . D 4 HOH A 107 609 609 HOH HOH . D 4 HOH A 108 610 610 HOH HOH . D 4 HOH A 109 611 611 HOH HOH . D 4 HOH A 110 612 612 HOH HOH . D 4 HOH A 111 613 613 HOH HOH . D 4 HOH A 112 614 614 HOH HOH . D 4 HOH A 113 615 615 HOH HOH . D 4 HOH A 114 616 616 HOH HOH . D 4 HOH A 115 617 617 HOH HOH . D 4 HOH A 116 618 618 HOH HOH . D 4 HOH A 117 619 619 HOH HOH . D 4 HOH A 118 620 620 HOH HOH . D 4 HOH A 119 621 621 HOH HOH . D 4 HOH A 120 622 622 HOH HOH . D 4 HOH A 121 623 623 HOH HOH . D 4 HOH A 122 624 624 HOH HOH . D 4 HOH A 123 625 625 HOH HOH . D 4 HOH A 124 626 626 HOH HOH . D 4 HOH A 125 627 627 HOH HOH . D 4 HOH A 126 628 628 HOH HOH . D 4 HOH A 127 629 629 HOH HOH . D 4 HOH A 128 631 631 HOH HOH . D 4 HOH A 129 632 632 HOH HOH . D 4 HOH A 130 634 634 HOH HOH . D 4 HOH A 131 635 635 HOH HOH . D 4 HOH A 132 636 636 HOH HOH . D 4 HOH A 133 637 637 HOH HOH . D 4 HOH A 134 639 639 HOH HOH . D 4 HOH A 135 641 641 HOH HOH . D 4 HOH A 136 642 642 HOH HOH . D 4 HOH A 137 643 643 HOH HOH . D 4 HOH A 138 644 644 HOH HOH . D 4 HOH A 139 645 645 HOH HOH . D 4 HOH A 140 646 646 HOH HOH . D 4 HOH A 141 647 647 HOH HOH . D 4 HOH A 142 648 648 HOH HOH . D 4 HOH A 143 649 649 HOH HOH . D 4 HOH A 144 650 650 HOH HOH . D 4 HOH A 145 651 651 HOH HOH . D 4 HOH A 146 652 652 HOH HOH . D 4 HOH A 147 654 654 HOH HOH . D 4 HOH A 148 656 656 HOH HOH . D 4 HOH A 149 657 657 HOH HOH . D 4 HOH A 150 658 658 HOH HOH . D 4 HOH A 151 659 659 HOH HOH . D 4 HOH A 152 660 660 HOH HOH . D 4 HOH A 153 661 661 HOH HOH . D 4 HOH A 154 662 662 HOH HOH . D 4 HOH A 155 663 663 HOH HOH . D 4 HOH A 156 664 664 HOH HOH . D 4 HOH A 157 665 665 HOH HOH . D 4 HOH A 158 666 666 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.159 _atom_site.Cartn_y 26.833 _atom_site.Cartn_z 15.617 _atom_site.occupancy 0.88 _atom_site.B_iso_or_equiv 12.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 487 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 403 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #