data_1NGP
#
_model_server_result.job_id            nQ5M7GemydhL_Q8JYy2TnQ 
_model_server_result.datetime_utc      '2025-03-06 00:14:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ngp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    1NGP 
#
_exptl.entry_id    1NGP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              197.145 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(4-HYDROXY-3-NITROPHENYL)ACETIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NGP 
_cell.length_a            110.691 
_cell.length_b            110.691 
_cell.length_c            98.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NGP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf2 A SG CYS 137 L CYS 137 1_555 A SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
disulf ? disulf4 B SG CYS 147 H CYS 147 1_555 B SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C8 H7 N O5' 
_chem_comp.formula_weight    197.145 
_chem_comp.id                NPA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(4-HYDROXY-3-NITROPHENYL)ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NPA doub 237 n y 
C1 C6 NPA sing 238 n y 
C1 C7 NPA sing 239 n n 
C2 C3 NPA sing 240 n y 
C2 H2 NPA sing 241 n n 
C3 C4 NPA doub 242 n y 
C3 N1 NPA sing 243 n n 
C4 C5 NPA sing 244 n y 
C4 O3 NPA sing 245 n n 
C5 C6 NPA doub 246 n y 
C5 H5 NPA sing 247 n n 
C6 H6 NPA sing 248 n n 
C7 C8 NPA sing 249 n n 
C7 H71 NPA sing 250 n n 
C7 H72 NPA sing 251 n n 
C8 O4 NPA doub 252 n n 
C8 O5 NPA sing 253 n n 
N1 O1 NPA sing 254 n n 
N1 O2 NPA doub 255 n n 
O3 HO3 NPA sing 256 n n 
O5 HO5 NPA sing 257 n n 
#
_atom_sites.entry_id                     1NGP 
_atom_sites.fract_transf_matrix[1][1]    0.009034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009034 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 H 1 301 301 SO4 SO4 . 
D 4 NPA H 1 302 302 NPA NPA . 
E 5 HOH L 1 216 1 HOH HOH . 
E 5 HOH L 2 217 14 HOH HOH . 
E 5 HOH L 3 218 15 HOH HOH . 
E 5 HOH L 4 219 17 HOH HOH . 
E 5 HOH L 5 220 25 HOH HOH . 
E 5 HOH L 6 221 26 HOH HOH . 
E 5 HOH L 7 222 27 HOH HOH . 
E 5 HOH L 8 223 28 HOH HOH . 
E 5 HOH L 9 224 29 HOH HOH . 
E 5 HOH L 10 225 30 HOH HOH . 
E 5 HOH L 11 226 31 HOH HOH . 
E 5 HOH L 12 227 32 HOH HOH . 
E 5 HOH L 13 228 33 HOH HOH . 
E 5 HOH L 14 229 34 HOH HOH . 
E 5 HOH L 15 230 36 HOH HOH . 
E 5 HOH L 16 231 37 HOH HOH . 
E 5 HOH L 17 232 38 HOH HOH . 
E 5 HOH L 18 233 39 HOH HOH . 
E 5 HOH L 19 234 40 HOH HOH . 
E 5 HOH L 20 235 41 HOH HOH . 
E 5 HOH L 21 236 54 HOH HOH . 
E 5 HOH L 22 237 55 HOH HOH . 
E 5 HOH L 23 238 56 HOH HOH . 
E 5 HOH L 24 239 57 HOH HOH . 
E 5 HOH L 25 240 59 HOH HOH . 
E 5 HOH L 26 241 61 HOH HOH . 
E 5 HOH L 27 242 62 HOH HOH . 
E 5 HOH L 28 243 63 HOH HOH . 
E 5 HOH L 29 244 64 HOH HOH . 
E 5 HOH L 30 245 70 HOH HOH . 
E 5 HOH L 31 246 71 HOH HOH . 
E 5 HOH L 32 247 72 HOH HOH . 
E 5 HOH L 33 248 73 HOH HOH . 
E 5 HOH L 34 249 74 HOH HOH . 
E 5 HOH L 35 250 75 HOH HOH . 
E 5 HOH L 36 251 77 HOH HOH . 
E 5 HOH L 37 252 78 HOH HOH . 
E 5 HOH L 38 253 79 HOH HOH . 
E 5 HOH L 39 254 80 HOH HOH . 
E 5 HOH L 40 255 81 HOH HOH . 
E 5 HOH L 41 256 82 HOH HOH . 
E 5 HOH L 42 257 86 HOH HOH . 
E 5 HOH L 43 258 87 HOH HOH . 
E 5 HOH L 44 259 88 HOH HOH . 
E 5 HOH L 45 260 105 HOH HOH . 
E 5 HOH L 46 261 106 HOH HOH . 
E 5 HOH L 47 262 107 HOH HOH . 
E 5 HOH L 48 263 108 HOH HOH . 
E 5 HOH L 49 264 109 HOH HOH . 
E 5 HOH L 50 265 110 HOH HOH . 
E 5 HOH L 51 266 111 HOH HOH . 
E 5 HOH L 52 267 113 HOH HOH . 
E 5 HOH L 53 268 116 HOH HOH . 
E 5 HOH L 54 269 120 HOH HOH . 
E 5 HOH L 55 270 123 HOH HOH . 
E 5 HOH L 56 271 124 HOH HOH . 
E 5 HOH L 57 272 125 HOH HOH . 
E 5 HOH L 58 273 131 HOH HOH . 
F 5 HOH H 1 303 2 HOH HOH . 
F 5 HOH H 2 304 3 HOH HOH . 
F 5 HOH H 3 305 4 HOH HOH . 
F 5 HOH H 4 306 5 HOH HOH . 
F 5 HOH H 5 307 6 HOH HOH . 
F 5 HOH H 6 308 7 HOH HOH . 
F 5 HOH H 7 309 8 HOH HOH . 
F 5 HOH H 8 310 9 HOH HOH . 
F 5 HOH H 9 311 10 HOH HOH . 
F 5 HOH H 10 312 11 HOH HOH . 
F 5 HOH H 11 313 12 HOH HOH . 
F 5 HOH H 12 314 13 HOH HOH . 
F 5 HOH H 13 315 16 HOH HOH . 
F 5 HOH H 14 316 18 HOH HOH . 
F 5 HOH H 15 317 19 HOH HOH . 
F 5 HOH H 16 318 20 HOH HOH . 
F 5 HOH H 17 319 21 HOH HOH . 
F 5 HOH H 18 320 22 HOH HOH . 
F 5 HOH H 19 321 23 HOH HOH . 
F 5 HOH H 20 322 24 HOH HOH . 
F 5 HOH H 21 323 35 HOH HOH . 
F 5 HOH H 22 324 42 HOH HOH . 
F 5 HOH H 23 325 43 HOH HOH . 
F 5 HOH H 24 326 44 HOH HOH . 
F 5 HOH H 25 327 45 HOH HOH . 
F 5 HOH H 26 328 46 HOH HOH . 
F 5 HOH H 27 329 47 HOH HOH . 
F 5 HOH H 28 330 48 HOH HOH . 
F 5 HOH H 29 331 49 HOH HOH . 
F 5 HOH H 30 332 50 HOH HOH . 
F 5 HOH H 31 333 51 HOH HOH . 
F 5 HOH H 32 334 52 HOH HOH . 
F 5 HOH H 33 335 53 HOH HOH . 
F 5 HOH H 34 336 58 HOH HOH . 
F 5 HOH H 35 337 60 HOH HOH . 
F 5 HOH H 36 338 65 HOH HOH . 
F 5 HOH H 37 339 66 HOH HOH . 
F 5 HOH H 38 340 67 HOH HOH . 
F 5 HOH H 39 341 68 HOH HOH . 
F 5 HOH H 40 342 69 HOH HOH . 
F 5 HOH H 41 343 76 HOH HOH . 
F 5 HOH H 42 344 83 HOH HOH . 
F 5 HOH H 43 345 84 HOH HOH . 
F 5 HOH H 44 346 85 HOH HOH . 
F 5 HOH H 45 347 89 HOH HOH . 
F 5 HOH H 46 348 90 HOH HOH . 
F 5 HOH H 47 349 91 HOH HOH . 
F 5 HOH H 48 350 92 HOH HOH . 
F 5 HOH H 49 351 93 HOH HOH . 
F 5 HOH H 50 352 94 HOH HOH . 
F 5 HOH H 51 353 95 HOH HOH . 
F 5 HOH H 52 354 96 HOH HOH . 
F 5 HOH H 53 355 97 HOH HOH . 
F 5 HOH H 54 356 98 HOH HOH . 
F 5 HOH H 55 357 99 HOH HOH . 
F 5 HOH H 56 358 100 HOH HOH . 
F 5 HOH H 57 359 101 HOH HOH . 
F 5 HOH H 58 360 102 HOH HOH . 
F 5 HOH H 59 361 103 HOH HOH . 
F 5 HOH H 60 362 104 HOH HOH . 
F 5 HOH H 61 363 112 HOH HOH . 
F 5 HOH H 62 364 114 HOH HOH . 
F 5 HOH H 63 365 115 HOH HOH . 
F 5 HOH H 64 366 117 HOH HOH . 
F 5 HOH H 65 367 118 HOH HOH . 
F 5 HOH H 66 368 119 HOH HOH . 
F 5 HOH H 67 369 121 HOH HOH . 
F 5 HOH H 68 370 122 HOH HOH . 
F 5 HOH H 69 371 126 HOH HOH . 
F 5 HOH H 70 372 127 HOH HOH . 
F 5 HOH H 71 373 128 HOH HOH . 
F 5 HOH H 72 374 129 HOH HOH . 
F 5 HOH H 73 375 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NPA . . . D 4 73.422 29.049 43.387 0.92 20.88 ? C1 NPA 302 H 1 
HETATM 2 C C2 NPA . . . D 4 72.56 29.42 42.425 0.92 18.15 ? C2 NPA 302 H 1 
HETATM 3 C C3 NPA . . . D 4 73.077 29.998 41.287 0.92 20.35 ? C3 NPA 302 H 1 
HETATM 4 C C4 NPA . . . D 4 74.432 30.245 41.095 0.92 21.38 ? C4 NPA 302 H 1 
HETATM 5 C C5 NPA . . . D 4 75.301 29.874 42.088 0.92 18.38 ? C5 NPA 302 H 1 
HETATM 6 C C6 NPA . . . D 4 74.794 29.295 43.204 0.92 18.66 ? C6 NPA 302 H 1 
HETATM 7 C C7 NPA . . . D 4 72.89 28.411 44.628 0.92 17.31 ? C7 NPA 302 H 1 
HETATM 8 C C8 NPA . . . D 4 72.815 29.425 45.764 0.92 21.13 ? C8 NPA 302 H 1 
HETATM 9 N N1 NPA . . . D 4 72.128 30.313 40.299 0.92 21.78 ? N1 NPA 302 H 1 
HETATM 10 O O1 NPA . . . D 4 70.949 30.105 40.458 0.92 21.96 ? O1 NPA 302 H 1 
HETATM 11 O O2 NPA . . . D 4 72.579 30.815 39.275 0.92 24.83 ? O2 NPA 302 H 1 
HETATM 12 O O3 NPA . . . D 4 75.033 30.805 40.03 0.92 20.26 ? O3 NPA 302 H 1 
HETATM 13 O O4 NPA . . . D 4 73.715 29.415 46.567 0.92 22.44 ? O4 NPA 302 H 1 
HETATM 14 O O5 NPA . . . D 4 71.759 30.139 45.849 0.92 22.25 ? O5 NPA 302 H 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           473 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#