data_1NGT # _model_server_result.job_id XN2XQSYTWCng0HDvPGtMwg _model_server_result.datetime_utc '2025-09-15 14:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ngt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 1NGT # _exptl.entry_id 1NGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NGT _cell.length_a 25.17 _cell.length_b 41.05 _cell.length_c 65.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DA 6 A DA 6 1_555 A P MTR 7 A MTR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 A O3' MTR 7 A MTR 7 1_555 A P DT 8 A DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale3 B O3' DA 6 B DA 18 1_555 B P MTR 7 B MTR 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale4 B O3' MTR 7 B MTR 19 1_555 B P DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? metalc ? metalc1 C MG MG . A MG 25 1_555 D O HOH . A HOH 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 C MG MG . A MG 25 1_555 D O HOH . A HOH 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc3 C MG MG . A MG 25 1_555 D O HOH . A HOH 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc4 C MG MG . A MG 25 1_555 D O HOH . A HOH 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 C MG MG . A MG 25 1_555 D O HOH . A HOH 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 C MG MG . A MG 25 1_555 E O HOH . B HOH 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 MTR 7 B MTR 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 MTR 7 B MTR 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 MTR 7 A MTR 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 MTR 7 A MTR 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NGT _atom_sites.fract_transf_matrix[1][1] 0.03973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 25 25 MG ION . D 3 HOH A 1 26 26 HOH HOH . D 3 HOH A 2 27 27 HOH HOH . D 3 HOH A 3 28 28 HOH HOH . D 3 HOH A 4 30 30 HOH HOH . D 3 HOH A 5 31 31 HOH HOH . D 3 HOH A 6 32 32 HOH HOH . D 3 HOH A 7 33 33 HOH HOH . D 3 HOH A 8 35 35 HOH HOH . D 3 HOH A 9 36 36 HOH HOH . D 3 HOH A 10 37 37 HOH HOH . D 3 HOH A 11 38 38 HOH HOH . D 3 HOH A 12 40 40 HOH HOH . D 3 HOH A 13 47 47 HOH HOH . D 3 HOH A 14 49 49 HOH HOH . D 3 HOH A 15 50 50 HOH HOH . D 3 HOH A 16 52 52 HOH HOH . D 3 HOH A 17 55 55 HOH HOH . D 3 HOH A 18 59 59 HOH HOH . D 3 HOH A 19 60 60 HOH HOH . D 3 HOH A 20 61 61 HOH HOH . D 3 HOH A 21 62 62 HOH HOH . D 3 HOH A 22 63 63 HOH HOH . D 3 HOH A 23 64 64 HOH HOH . D 3 HOH A 24 65 65 HOH HOH . D 3 HOH A 25 75 75 HOH HOH . D 3 HOH A 26 76 76 HOH HOH . D 3 HOH A 27 116 116 HOH HOH . D 3 HOH A 28 120 120 HOH HOH . D 3 HOH A 29 121 121 HOH HOH . D 3 HOH A 30 125 125 HOH HOH . D 3 HOH A 31 133 133 HOH HOH . D 3 HOH A 32 135 135 HOH HOH . D 3 HOH A 33 137 137 HOH HOH . D 3 HOH A 34 138 138 HOH HOH . D 3 HOH A 35 142 142 HOH HOH . D 3 HOH A 36 144 144 HOH HOH . D 3 HOH A 37 147 147 HOH HOH . D 3 HOH A 38 149 149 HOH HOH . D 3 HOH A 39 152 152 HOH HOH . D 3 HOH A 40 153 153 HOH HOH . D 3 HOH A 41 157 157 HOH HOH . D 3 HOH A 42 171 171 HOH HOH . D 3 HOH A 43 182 182 HOH HOH . D 3 HOH A 44 184 25 HOH ION . D 3 HOH A 45 185 25 HOH ION . D 3 HOH A 46 186 25 HOH ION . D 3 HOH A 47 187 25 HOH ION . D 3 HOH A 48 188 25 HOH ION . E 3 HOH B 1 29 29 HOH HOH . E 3 HOH B 2 34 34 HOH HOH . E 3 HOH B 3 41 41 HOH HOH . E 3 HOH B 4 42 42 HOH HOH . E 3 HOH B 5 43 43 HOH HOH . E 3 HOH B 6 46 46 HOH HOH . E 3 HOH B 7 48 48 HOH HOH . E 3 HOH B 8 53 53 HOH HOH . E 3 HOH B 9 54 54 HOH HOH . E 3 HOH B 10 56 56 HOH HOH . E 3 HOH B 11 68 68 HOH HOH . E 3 HOH B 12 79 79 HOH HOH . E 3 HOH B 13 87 87 HOH HOH . E 3 HOH B 14 88 88 HOH HOH . E 3 HOH B 15 89 89 HOH HOH . E 3 HOH B 16 98 98 HOH HOH . E 3 HOH B 17 99 99 HOH HOH . E 3 HOH B 18 106 106 HOH HOH . E 3 HOH B 19 108 108 HOH HOH . E 3 HOH B 20 109 109 HOH HOH . E 3 HOH B 21 110 110 HOH HOH . E 3 HOH B 22 122 122 HOH HOH . E 3 HOH B 23 123 123 HOH HOH . E 3 HOH B 24 126 126 HOH HOH . E 3 HOH B 25 136 136 HOH HOH . E 3 HOH B 26 141 141 HOH HOH . E 3 HOH B 27 148 148 HOH HOH . E 3 HOH B 28 150 150 HOH HOH . E 3 HOH B 29 160 160 HOH HOH . E 3 HOH B 30 161 161 HOH HOH . E 3 HOH B 31 162 162 HOH HOH . E 3 HOH B 32 169 169 HOH HOH . E 3 HOH B 33 181 181 HOH HOH . E 3 HOH B 34 183 25 HOH ION . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.257 _atom_site.Cartn_y 29.984 _atom_site.Cartn_z 19.752 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 25 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #