data_1NHB # _model_server_result.job_id GnuEmcx8SjAi6GWtS32KCw _model_server_result.datetime_utc '2024-11-24 09:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nhb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 1NHB # _exptl.entry_id 1NHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NHB _cell.length_a 60.8 _cell.length_b 60.8 _cell.length_c 97.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 1NHB _atom_sites.fract_transf_matrix[1][1] 0.016447 _atom_sites.fract_transf_matrix[1][2] 0.009496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 173 CL CL . C 2 CL A 1 178 178 CL CL . D 3 HED A 1 170 170 HED HED . E 4 PYJ A 1 401 401 PYJ N2B . F 5 HOH A 1 171 171 HOH HOH . F 5 HOH A 2 172 172 HOH HOH . F 5 HOH A 3 174 174 HOH HOH . F 5 HOH A 4 175 175 HOH HOH . F 5 HOH A 5 177 177 HOH HOH . F 5 HOH A 6 179 179 HOH HOH . F 5 HOH A 7 180 180 HOH HOH . F 5 HOH A 8 181 181 HOH HOH . F 5 HOH A 9 182 182 HOH HOH . F 5 HOH A 10 183 183 HOH HOH . F 5 HOH A 11 184 184 HOH HOH . F 5 HOH A 12 185 185 HOH HOH . F 5 HOH A 13 186 186 HOH HOH . F 5 HOH A 14 187 187 HOH HOH . F 5 HOH A 15 188 188 HOH HOH . F 5 HOH A 16 189 189 HOH HOH . F 5 HOH A 17 190 190 HOH HOH . F 5 HOH A 18 191 191 HOH HOH . F 5 HOH A 19 192 192 HOH HOH . F 5 HOH A 20 193 193 HOH HOH . F 5 HOH A 21 194 194 HOH HOH . F 5 HOH A 22 195 195 HOH HOH . F 5 HOH A 23 196 196 HOH HOH . F 5 HOH A 24 198 198 HOH HOH . F 5 HOH A 25 200 200 HOH HOH . F 5 HOH A 26 201 201 HOH HOH . F 5 HOH A 27 202 202 HOH HOH . F 5 HOH A 28 203 203 HOH HOH . F 5 HOH A 29 204 204 HOH HOH . F 5 HOH A 30 207 207 HOH HOH . F 5 HOH A 31 208 208 HOH HOH . F 5 HOH A 32 209 209 HOH HOH . F 5 HOH A 33 210 210 HOH HOH . F 5 HOH A 34 211 211 HOH HOH . F 5 HOH A 35 213 213 HOH HOH . F 5 HOH A 36 214 214 HOH HOH . F 5 HOH A 37 215 215 HOH HOH . F 5 HOH A 38 216 216 HOH HOH . F 5 HOH A 39 217 217 HOH HOH . F 5 HOH A 40 218 218 HOH HOH . F 5 HOH A 41 219 219 HOH HOH . F 5 HOH A 42 220 220 HOH HOH . F 5 HOH A 43 221 221 HOH HOH . F 5 HOH A 44 222 222 HOH HOH . F 5 HOH A 45 223 223 HOH HOH . F 5 HOH A 46 224 224 HOH HOH . F 5 HOH A 47 225 225 HOH HOH . F 5 HOH A 48 226 226 HOH HOH . F 5 HOH A 49 227 227 HOH HOH . F 5 HOH A 50 228 228 HOH HOH . F 5 HOH A 51 229 229 HOH HOH . F 5 HOH A 52 230 230 HOH HOH . F 5 HOH A 53 231 231 HOH HOH . F 5 HOH A 54 232 232 HOH HOH . F 5 HOH A 55 233 233 HOH HOH . F 5 HOH A 56 234 234 HOH HOH . F 5 HOH A 57 235 235 HOH HOH . F 5 HOH A 58 236 236 HOH HOH . F 5 HOH A 59 237 237 HOH HOH . F 5 HOH A 60 238 238 HOH HOH . F 5 HOH A 61 239 239 HOH HOH . F 5 HOH A 62 240 240 HOH HOH . F 5 HOH A 63 242 242 HOH HOH . F 5 HOH A 64 244 244 HOH HOH . F 5 HOH A 65 245 245 HOH HOH . F 5 HOH A 66 246 246 HOH HOH . F 5 HOH A 67 247 247 HOH HOH . F 5 HOH A 68 248 248 HOH HOH . F 5 HOH A 69 249 249 HOH HOH . F 5 HOH A 70 250 250 HOH HOH . F 5 HOH A 71 251 251 HOH HOH . F 5 HOH A 72 254 254 HOH HOH . F 5 HOH A 73 256 256 HOH HOH . F 5 HOH A 74 259 259 HOH HOH . F 5 HOH A 75 260 260 HOH HOH . F 5 HOH A 76 261 261 HOH HOH . F 5 HOH A 77 263 263 HOH HOH . F 5 HOH A 78 265 265 HOH HOH . F 5 HOH A 79 266 266 HOH HOH . F 5 HOH A 80 267 267 HOH HOH . F 5 HOH A 81 268 268 HOH HOH . F 5 HOH A 82 269 269 HOH HOH . F 5 HOH A 83 271 271 HOH HOH . F 5 HOH A 84 272 272 HOH HOH . F 5 HOH A 85 273 273 HOH HOH . F 5 HOH A 86 274 274 HOH HOH . F 5 HOH A 87 277 277 HOH HOH . F 5 HOH A 88 278 278 HOH HOH . F 5 HOH A 89 280 280 HOH HOH . F 5 HOH A 90 281 281 HOH HOH . F 5 HOH A 91 282 282 HOH HOH . F 5 HOH A 92 283 283 HOH HOH . F 5 HOH A 93 284 284 HOH HOH . F 5 HOH A 94 285 285 HOH HOH . F 5 HOH A 95 286 286 HOH HOH . F 5 HOH A 96 288 288 HOH HOH . F 5 HOH A 97 289 289 HOH HOH . F 5 HOH A 98 290 290 HOH HOH . F 5 HOH A 99 292 292 HOH HOH . F 5 HOH A 100 293 293 HOH HOH . F 5 HOH A 101 294 294 HOH HOH . F 5 HOH A 102 295 295 HOH HOH . F 5 HOH A 103 296 296 HOH HOH . F 5 HOH A 104 297 297 HOH HOH . F 5 HOH A 105 298 298 HOH HOH . F 5 HOH A 106 299 299 HOH HOH . F 5 HOH A 107 300 300 HOH HOH . F 5 HOH A 108 301 301 HOH HOH . F 5 HOH A 109 302 302 HOH HOH . F 5 HOH A 110 303 303 HOH HOH . F 5 HOH A 111 306 306 HOH HOH . F 5 HOH A 112 307 307 HOH HOH . F 5 HOH A 113 311 311 HOH HOH . F 5 HOH A 114 312 312 HOH HOH . F 5 HOH A 115 313 313 HOH HOH . F 5 HOH A 116 314 314 HOH HOH . F 5 HOH A 117 315 315 HOH HOH . F 5 HOH A 118 318 318 HOH HOH . F 5 HOH A 119 319 319 HOH HOH . F 5 HOH A 120 321 321 HOH HOH . F 5 HOH A 121 322 322 HOH HOH . F 5 HOH A 122 323 323 HOH HOH . F 5 HOH A 123 324 324 HOH HOH . F 5 HOH A 124 325 325 HOH HOH . F 5 HOH A 125 326 326 HOH HOH . F 5 HOH A 126 327 327 HOH HOH . F 5 HOH A 127 328 328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . D 3 31.905 -1.293 15.193 1 35.33 ? C1 HED 170 A 1 HETATM 2 O O1 HED . . . D 3 33.107 -0.814 15.775 1 64.11 ? O1 HED 170 A 1 HETATM 3 C C2 HED . . . D 3 31.861 -0.74 13.804 1 47.28 ? C2 HED 170 A 1 HETATM 4 S S3 HED . . . D 3 33.302 -1.372 12.97 1 60.79 ? S3 HED 170 A 1 HETATM 5 S S4 HED . . . D 3 32.836 -1.043 10.959 1 100 ? S4 HED 170 A 1 HETATM 6 C C5 HED . . . D 3 32.558 -2.633 10.129 1 54 ? C5 HED 170 A 1 HETATM 7 C C6 HED . . . D 3 33.874 -3.308 9.679 1 99.89 ? C6 HED 170 A 1 HETATM 8 O O6 HED . . . D 3 34.621 -2.417 8.876 1 74.39 ? O6 HED 170 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #