data_1NHG # _model_server_result.job_id flf-2ZMJ6D5v9gxjPky_Hw _model_server_result.datetime_utc '2024-12-04 10:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":450}' # _entry.id 1NHG # _exptl.entry_id 1NHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NHG _cell.length_a 133.082 _cell.length_b 133.082 _cell.length_c 84.157 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 133.082 133.082 42.0785 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1NHG _atom_sites.fract_transf_matrix[1][1] 0.007514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 450 450 NAD NAD . F 4 TCL A 1 500 500 TCL TCL . G 3 NAD B 1 550 550 NAD NAD . H 4 TCL B 1 600 600 TCL TCL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 51.314 89.541 40.974 1 29.29 ? PA NAD 450 A 1 HETATM 2 O O1A NAD . . . E 3 51.018 89.568 42.433 1 31.47 ? O1A NAD 450 A 1 HETATM 3 O O2A NAD . . . E 3 52.768 89.639 40.541 1 30.26 ? O2A NAD 450 A 1 HETATM 4 O O5B NAD . . . E 3 50.652 88.15 40.436 1 31.31 ? O5B NAD 450 A 1 HETATM 5 C C5B NAD . . . E 3 51.016 87.374 39.269 1 31.78 ? C5B NAD 450 A 1 HETATM 6 C C4B NAD . . . E 3 51.38 85.985 39.679 1 31.66 ? C4B NAD 450 A 1 HETATM 7 O O4B NAD . . . E 3 51.524 85.036 38.574 1 31.27 ? O4B NAD 450 A 1 HETATM 8 C C3B NAD . . . E 3 52.705 85.928 40.457 1 32.74 ? C3B NAD 450 A 1 HETATM 9 O O3B NAD . . . E 3 52.359 85.799 41.854 1 36.11 ? O3B NAD 450 A 1 HETATM 10 C C2B NAD . . . E 3 53.46 84.721 39.89 1 32.66 ? C2B NAD 450 A 1 HETATM 11 O O2B NAD . . . E 3 53.997 83.948 40.938 1 33.27 ? O2B NAD 450 A 1 HETATM 12 C C1B NAD . . . E 3 52.414 83.999 38.993 1 31.64 ? C1B NAD 450 A 1 HETATM 13 N N9A NAD . . . E 3 53.021 83.37 37.79 1 30.99 ? N9A NAD 450 A 1 HETATM 14 C C8A NAD . . . E 3 53.889 83.596 36.741 1 31.95 ? C8A NAD 450 A 1 HETATM 15 N N7A NAD . . . E 3 54.071 82.586 35.904 1 32.6 ? N7A NAD 450 A 1 HETATM 16 C C5A NAD . . . E 3 53.255 81.595 36.426 1 30.55 ? C5A NAD 450 A 1 HETATM 17 C C6A NAD . . . E 3 53.005 80.279 36.027 1 30.06 ? C6A NAD 450 A 1 HETATM 18 N N6A NAD . . . E 3 53.575 79.707 34.98 1 28.2 ? N6A NAD 450 A 1 HETATM 19 N N1A NAD . . . E 3 52.142 79.547 36.762 1 31.17 ? N1A NAD 450 A 1 HETATM 20 C C2A NAD . . . E 3 51.51 80.118 37.812 1 32.08 ? C2A NAD 450 A 1 HETATM 21 N N3A NAD . . . E 3 51.716 81.325 38.348 1 30.56 ? N3A NAD 450 A 1 HETATM 22 C C4A NAD . . . E 3 52.596 82.055 37.582 1 31.47 ? C4A NAD 450 A 1 HETATM 23 O O3 NAD . . . E 3 50.773 90.635 40.057 1 30.24 ? O3 NAD 450 A 1 HETATM 24 P PN NAD . . . E 3 49.409 91.215 39.816 1 25.13 ? PN NAD 450 A 1 HETATM 25 O O1N NAD . . . E 3 48.511 91.219 41.013 1 30.61 ? O1N NAD 450 A 1 HETATM 26 O O2N NAD . . . E 3 49.67 92.502 39.13 1 26.17 ? O2N NAD 450 A 1 HETATM 27 O O5D NAD . . . E 3 48.913 90.35 38.57 1 27.52 ? O5D NAD 450 A 1 HETATM 28 C C5D NAD . . . E 3 47.81 89.444 38.589 1 24.39 ? C5D NAD 450 A 1 HETATM 29 C C4D NAD . . . E 3 46.952 89.724 37.34 1 24.15 ? C4D NAD 450 A 1 HETATM 30 O O4D NAD . . . E 3 46.459 91.102 37.376 1 23.43 ? O4D NAD 450 A 1 HETATM 31 C C3D NAD . . . E 3 47.77 89.563 36.055 1 23.2 ? C3D NAD 450 A 1 HETATM 32 O O3D NAD . . . E 3 46.998 88.794 35.189 1 19.65 ? O3D NAD 450 A 1 HETATM 33 C C2D NAD . . . E 3 47.928 90.973 35.599 1 23.4 ? C2D NAD 450 A 1 HETATM 34 O O2D NAD . . . E 3 48.082 91.024 34.209 1 23.42 ? O2D NAD 450 A 1 HETATM 35 C C1D NAD . . . E 3 46.641 91.586 36.051 1 23.26 ? C1D NAD 450 A 1 HETATM 36 N N1N NAD . . . E 3 46.587 93.052 36.04 1 23.99 ? N1N NAD 450 A 1 HETATM 37 C C2N NAD . . . E 3 47.416 93.768 36.94 1 23.22 ? C2N NAD 450 A 1 HETATM 38 C C3N NAD . . . E 3 47.546 95.147 37.064 1 24.46 ? C3N NAD 450 A 1 HETATM 39 C C7N NAD . . . E 3 48.387 95.912 38.001 1 23.5 ? C7N NAD 450 A 1 HETATM 40 O O7N NAD . . . E 3 48.562 97.236 37.905 1 23.96 ? O7N NAD 450 A 1 HETATM 41 N N7N NAD . . . E 3 49.1 95.388 38.987 1 22.51 ? N7N NAD 450 A 1 HETATM 42 C C4N NAD . . . E 3 46.623 95.762 36.222 1 24.44 ? C4N NAD 450 A 1 HETATM 43 C C5N NAD . . . E 3 45.678 95.153 35.328 1 25.25 ? C5N NAD 450 A 1 HETATM 44 C C6N NAD . . . E 3 45.688 93.717 35.237 1 25.06 ? C6N NAD 450 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #