data_1NHG # _model_server_result.job_id OqMqcYN6Ih1oE4jetPKjQA _model_server_result.datetime_utc '2024-12-04 10:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":550}' # _entry.id 1NHG # _exptl.entry_id 1NHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NHG _cell.length_a 133.082 _cell.length_b 133.082 _cell.length_c 84.157 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 133.082 133.082 42.0785 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1NHG _atom_sites.fract_transf_matrix[1][1] 0.007514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 450 450 NAD NAD . F 4 TCL A 1 500 500 TCL TCL . G 3 NAD B 1 550 550 NAD NAD . H 4 TCL B 1 600 600 TCL TCL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 3 8.358 100.201 32.323 1 27.63 ? PA NAD 550 B 1 HETATM 2 O O1A NAD . . . G 3 7.948 99.448 33.544 1 33.54 ? O1A NAD 550 B 1 HETATM 3 O O2A NAD . . . G 3 7.299 100.482 31.289 1 30.36 ? O2A NAD 550 B 1 HETATM 4 O O5B NAD . . . G 3 9 101.587 32.886 1 29.89 ? O5B NAD 550 B 1 HETATM 5 C C5B NAD . . . G 3 9.109 102.866 32.231 1 28.6 ? C5B NAD 550 B 1 HETATM 6 C C4B NAD . . . G 3 8.44 103.909 33.066 1 29.75 ? C4B NAD 550 B 1 HETATM 7 O O4B NAD . . . G 3 8.718 105.277 32.64 1 28.44 ? O4B NAD 550 B 1 HETATM 8 C C3B NAD . . . G 3 6.912 103.76 33.05 1 30.48 ? C3B NAD 550 B 1 HETATM 9 O O3B NAD . . . G 3 6.571 103.226 34.354 1 33.37 ? O3B NAD 550 B 1 HETATM 10 C C2B NAD . . . G 3 6.364 105.17 32.81 1 29.29 ? C2B NAD 550 B 1 HETATM 11 O O2B NAD . . . G 3 5.273 105.416 33.658 1 31.07 ? O2B NAD 550 B 1 HETATM 12 C C1B NAD . . . G 3 7.6 106.096 33.004 1 28.37 ? C1B NAD 550 B 1 HETATM 13 N N9A NAD . . . G 3 7.59 107.268 32.109 1 27.77 ? N9A NAD 550 B 1 HETATM 14 C C8A NAD . . . G 3 7.392 107.647 30.799 1 27.07 ? C8A NAD 550 B 1 HETATM 15 N N7A NAD . . . G 3 7.519 108.935 30.548 1 28.52 ? N7A NAD 550 B 1 HETATM 16 C C5A NAD . . . G 3 7.832 109.472 31.785 1 23.93 ? C5A NAD 550 B 1 HETATM 17 C C6A NAD . . . G 3 8.072 110.776 32.193 1 23.53 ? C6A NAD 550 B 1 HETATM 18 N N6A NAD . . . G 3 8.023 111.813 31.373 1 21.76 ? N6A NAD 550 B 1 HETATM 19 N N1A NAD . . . G 3 8.355 110.992 33.502 1 23.52 ? N1A NAD 550 B 1 HETATM 20 C C2A NAD . . . G 3 8.453 109.941 34.342 1 22.03 ? C2A NAD 550 B 1 HETATM 21 N N3A NAD . . . G 3 8.166 108.661 34.092 1 24.01 ? N3A NAD 550 B 1 HETATM 22 C C4A NAD . . . G 3 7.886 108.47 32.76 1 24.58 ? C4A NAD 550 B 1 HETATM 23 O O3 NAD . . . G 3 9.398 99.634 31.371 1 29.78 ? O3 NAD 550 B 1 HETATM 24 P PN NAD . . . G 3 10.782 99.092 31.542 1 24.97 ? PN NAD 550 B 1 HETATM 25 O O1N NAD . . . G 3 10.999 98.397 32.846 1 25.36 ? O1N NAD 550 B 1 HETATM 26 O O2N NAD . . . G 3 11.038 98.344 30.277 1 24.91 ? O2N NAD 550 B 1 HETATM 27 O O5D NAD . . . G 3 11.685 100.386 31.248 1 25.1 ? O5D NAD 550 B 1 HETATM 28 C C5D NAD . . . G 3 12.522 101.042 32.199 1 25.05 ? C5D NAD 550 B 1 HETATM 29 C C4D NAD . . . G 3 13.908 101.268 31.554 1 26.89 ? C4D NAD 550 B 1 HETATM 30 O O4D NAD . . . G 3 14.483 99.985 31.165 1 26.35 ? O4D NAD 550 B 1 HETATM 31 C C3D NAD . . . G 3 13.813 102.138 30.29 1 27.52 ? C3D NAD 550 B 1 HETATM 32 O O3D NAD . . . G 3 14.802 103.123 30.413 1 28.29 ? O3D NAD 550 B 1 HETATM 33 C C2D NAD . . . G 3 14.094 101.159 29.197 1 26.09 ? C2D NAD 550 B 1 HETATM 34 O O2D NAD . . . G 3 14.688 101.8 28.098 1 24.01 ? O2D NAD 550 B 1 HETATM 35 C C1D NAD . . . G 3 15.03 100.195 29.865 1 24.85 ? C1D NAD 550 B 1 HETATM 36 N N1N NAD . . . G 3 15.208 98.897 29.2 1 25.92 ? N1N NAD 550 B 1 HETATM 37 C C2N NAD . . . G 3 14.122 97.981 29.198 1 24.99 ? C2N NAD 550 B 1 HETATM 38 C C3N NAD . . . G 3 14.068 96.722 28.596 1 26.69 ? C3N NAD 550 B 1 HETATM 39 C C7N NAD . . . G 3 12.957 95.748 28.602 1 26.65 ? C7N NAD 550 B 1 HETATM 40 O O7N NAD . . . G 3 12.941 94.653 27.835 1 26.31 ? O7N NAD 550 B 1 HETATM 41 N N7N NAD . . . G 3 11.854 95.86 29.325 1 29.03 ? N7N NAD 550 B 1 HETATM 42 C C4N NAD . . . G 3 15.323 96.419 28.072 1 24.9 ? C4N NAD 550 B 1 HETATM 43 C C5N NAD . . . G 3 16.513 97.22 28.084 1 23.83 ? C5N NAD 550 B 1 HETATM 44 C C6N NAD . . . G 3 16.426 98.534 28.672 1 24.83 ? C6N NAD 550 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #