data_1NI1 # _model_server_result.job_id IEKlrUllcMyLKXAYXhnQGA _model_server_result.datetime_utc '2025-02-05 07:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ni1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":10}' # _entry.id 1NI1 # _exptl.entry_id 1NI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.341 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-CHLORO-5-(3-CHLORO-PHENYL)-6-[(4-CYANO-PHENYL)-(3-METHYL-3H-IMIDAZOL-4-YL)- METHOXYMETHYL]-NICOTINONITRILE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NI1 _cell.length_a 170.096 _cell.length_b 170.096 _cell.length_c 69.286 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E N3 2C5 . B 2C5 10 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc2 B OD2 ASP 276 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 B OD1 ASP 276 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 B SG CYS 278 B CYS 299 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 B NE2 HIS 341 B HIS 362 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C25 H17 Cl2 N5 O' _chem_comp.formula_weight 474.341 _chem_comp.id 2C5 _chem_comp.mon_nstd_flag . _chem_comp.name '2-CHLORO-5-(3-CHLORO-PHENYL)-6-[(4-CYANO-PHENYL)-(3-METHYL-3H-IMIDAZOL-4-YL)- METHOXYMETHYL]-NICOTINONITRILE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C38 2C5 sing 1 n n O2 C1 2C5 sing 2 n n C38 C40 2C5 sing 3 n n C38 C12 2C5 sing 4 n n C38 HC38 2C5 sing 5 n n C40 C43 2C5 doub 6 n y C40 C47 2C5 sing 7 n y C43 C44 2C5 sing 8 n y C43 HC43 2C5 sing 9 n n C44 C45 2C5 doub 10 n y C44 HC44 2C5 sing 11 n n C45 C46 2C5 sing 12 n y C45 C65 2C5 sing 13 n n C46 C47 2C5 doub 14 n y C46 HC46 2C5 sing 15 n n C47 HC47 2C5 sing 16 n n C52 C53 2C5 doub 17 n y C52 C2 2C5 sing 18 n y C52 HC52 2C5 sing 19 n n C53 CL1 2C5 sing 20 n n C53 C7 2C5 sing 21 n y C65 N1 2C5 trip 22 n n C7 C3 2C5 doub 23 n y C7 HC7 2C5 sing 24 n n C2 C4 2C5 doub 25 n y C2 HC2 2C5 sing 26 n n C3 C4 2C5 sing 27 n y C3 C13 2C5 sing 28 n y C4 HC4 2C5 sing 29 n n C1 C11 2C5 sing 30 n n C1 HC11 2C5 sing 31 n n C1 HC12 2C5 sing 32 n n N3 C10 2C5 sing 33 n y N3 C5 2C5 doub 34 n y C10 C12 2C5 doub 35 n y C10 HC10 2C5 sing 36 n n C12 N4 2C5 sing 37 n y N4 C5 2C5 sing 38 n y N4 C15 2C5 sing 39 n n C5 HC5 2C5 sing 40 n n C15 H151 2C5 sing 41 n n C15 H152 2C5 sing 42 n n C15 H153 2C5 sing 43 n n N2 C11 2C5 doub 44 n y N2 C6 2C5 sing 45 n y C11 C13 2C5 sing 46 n y C13 C14 2C5 doub 47 n y C14 C17 2C5 sing 48 n y C14 HC14 2C5 sing 49 n n C17 C6 2C5 doub 50 n y C17 C9 2C5 sing 51 n n C6 CL2 2C5 sing 52 n n C9 N5 2C5 trip 53 n n # _atom_sites.entry_id 1NI1 _atom_sites.fract_transf_matrix[1][1] 0.005879 _atom_sites.fract_transf_matrix[1][2] 0.003394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 500 500 ZN ZNK . D 4 HFP B 1 501 501 HFP HFP . E 5 2C5 B 1 10 10 2C5 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 2C5 . . . E 5 50.378 48.904 -1.238 1 30.46 ? O2 2C5 10 B 1 HETATM 2 C C38 2C5 . . . E 5 50.846 47.604 -0.841 1 34.08 ? C38 2C5 10 B 1 HETATM 3 C C40 2C5 . . . E 5 52.108 47.761 0.052 1 31.83 ? C40 2C5 10 B 1 HETATM 4 C C43 2C5 . . . E 5 52.07 47.492 1.46 1 32.81 ? C43 2C5 10 B 1 HETATM 5 C C44 2C5 . . . E 5 53.23 47.662 2.276 1 32.44 ? C44 2C5 10 B 1 HETATM 6 C C45 2C5 . . . E 5 54.434 48.101 1.683 1 30.25 ? C45 2C5 10 B 1 HETATM 7 C C46 2C5 . . . E 5 54.487 48.362 0.307 1 32.44 ? C46 2C5 10 B 1 HETATM 8 C C47 2C5 . . . E 5 53.344 48.198 -0.492 1 32 ? C47 2C5 10 B 1 HETATM 9 C C52 2C5 . . . E 5 54.603 52.026 1.797 1 26 ? C52 2C5 10 B 1 HETATM 10 C C53 2C5 . . . E 5 54.753 51.797 0.412 1 22.71 ? C53 2C5 10 B 1 HETATM 11 CL CL1 2C5 . . . E 5 56.319 51.44 -0.215 1 14.16 ? CL1 2C5 10 B 1 HETATM 12 C C65 2C5 . . . E 5 55.609 48.3 2.466 1 29.14 ? C65 2C5 10 B 1 HETATM 13 C C7 2C5 . . . E 5 53.644 51.849 -0.471 1 27.02 ? C7 2C5 10 B 1 HETATM 14 N N1 2C5 . . . E 5 56.554 48.514 3.097 1 30.08 ? N1 2C5 10 B 1 HETATM 15 C C2 2C5 . . . E 5 53.315 52.315 2.296 1 29.12 ? C2 2C5 10 B 1 HETATM 16 C C3 2C5 . . . E 5 52.352 52.141 0.03 1 28.71 ? C3 2C5 10 B 1 HETATM 17 C C4 2C5 . . . E 5 52.202 52.37 1.415 1 27.73 ? C4 2C5 10 B 1 HETATM 18 C C1 2C5 . . . E 5 50.105 49.944 -0.277 1 28.15 ? C1 2C5 10 B 1 HETATM 19 N N3 2C5 . . . E 5 51.723 45.405 -3.943 1 37.15 ? N3 2C5 10 B 1 HETATM 20 C C10 2C5 . . . E 5 52.048 46.074 -2.682 1 35.34 ? C10 2C5 10 B 1 HETATM 21 C C12 2C5 . . . E 5 50.983 46.749 -2.16 1 36.64 ? C12 2C5 10 B 1 HETATM 22 N N4 2C5 . . . E 5 49.921 46.47 -3.174 1 40.09 ? N4 2C5 10 B 1 HETATM 23 C C5 2C5 . . . E 5 50.444 45.693 -4.133 1 39.68 ? C5 2C5 10 B 1 HETATM 24 C C15 2C5 . . . E 5 48.525 46.928 -3.152 1 44.23 ? C15 2C5 10 B 1 HETATM 25 N N2 2C5 . . . E 5 49.119 51.41 -1.896 1 26.51 ? N2 2C5 10 B 1 HETATM 26 C C11 2C5 . . . E 5 50.157 51.234 -1.037 1 23.96 ? C11 2C5 10 B 1 HETATM 27 C C13 2C5 . . . E 5 51.178 52.213 -0.902 1 25.44 ? C13 2C5 10 B 1 HETATM 28 C C14 2C5 . . . E 5 51.064 53.374 -1.7 1 24.75 ? C14 2C5 10 B 1 HETATM 29 C C17 2C5 . . . E 5 49.988 53.541 -2.606 1 25.56 ? C17 2C5 10 B 1 HETATM 30 C C6 2C5 . . . E 5 49.009 52.521 -2.667 1 24.72 ? C6 2C5 10 B 1 HETATM 31 C C9 2C5 . . . E 5 49.906 54.734 -3.413 1 25.05 ? C9 2C5 10 B 1 HETATM 32 N N5 2C5 . . . E 5 49.826 55.658 -4.099 1 27.78 ? N5 2C5 10 B 1 HETATM 33 CL CL2 2C5 . . . E 5 47.638 52.646 -3.729 1 17.02 ? CL2 2C5 10 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #