data_1NI1 # _model_server_result.job_id 9ixxxUy7ZOG07RmPLRDe5w _model_server_result.datetime_utc '2025-02-05 07:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ni1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1NI1 # _exptl.entry_id 1NI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.394 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NI1 _cell.length_a 170.096 _cell.length_b 170.096 _cell.length_c 69.286 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E N3 2C5 . B 2C5 10 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc2 B OD2 ASP 276 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 B OD1 ASP 276 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 B SG CYS 278 B CYS 299 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 B NE2 HIS 341 B HIS 362 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C15 H33 O4 P' _chem_comp.formula_weight 308.394 _chem_comp.id HFP _chem_comp.mon_nstd_flag . _chem_comp.name 'ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P HFP doub 182 n n P O2P HFP sing 183 n n P O3P HFP sing 184 n n P C1 HFP sing 185 n n O2P HO2 HFP sing 186 n n O3P HO3 HFP sing 187 n n C1 O1 HFP sing 188 n n C1 C2 HFP sing 189 n n C1 H1 HFP sing 190 n n O1 HO1 HFP sing 191 n n C2 C3 HFP sing 192 n n C2 H21 HFP sing 193 n n C2 H22 HFP sing 194 n n C3 C4 HFP sing 195 n n C3 C5 HFP sing 196 n n C3 H3 HFP sing 197 n n C4 H41 HFP sing 198 n n C4 H42 HFP sing 199 n n C4 H43 HFP sing 200 n n C5 C6 HFP sing 201 n n C5 H51 HFP sing 202 n n C5 H52 HFP sing 203 n n C6 C7 HFP sing 204 n n C6 H61 HFP sing 205 n n C6 H62 HFP sing 206 n n C7 C8 HFP sing 207 n n C7 H71 HFP sing 208 n n C7 H72 HFP sing 209 n n C8 C9 HFP sing 210 n n C8 C10 HFP sing 211 n n C8 H8 HFP sing 212 n n C9 H91 HFP sing 213 n n C9 H92 HFP sing 214 n n C9 H93 HFP sing 215 n n C10 C11 HFP sing 216 n n C10 H101 HFP sing 217 n n C10 H102 HFP sing 218 n n C11 C12 HFP sing 219 n n C11 H111 HFP sing 220 n n C11 H112 HFP sing 221 n n C12 C13 HFP sing 222 n n C12 H121 HFP sing 223 n n C12 H122 HFP sing 224 n n C13 C14 HFP sing 225 n n C13 C15 HFP sing 226 n n C13 H13 HFP sing 227 n n C14 H141 HFP sing 228 n n C14 H142 HFP sing 229 n n C14 H143 HFP sing 230 n n C15 H151 HFP sing 231 n n C15 H152 HFP sing 232 n n C15 H153 HFP sing 233 n n # _atom_sites.entry_id 1NI1 _atom_sites.fract_transf_matrix[1][1] 0.005879 _atom_sites.fract_transf_matrix[1][2] 0.003394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 500 500 ZN ZNK . D 4 HFP B 1 501 501 HFP HFP . E 5 2C5 B 1 10 10 2C5 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P HFP . . . D 4 51.647 41.418 -0.333 1 54.37 ? P HFP 501 B 1 HETATM 2 O O1P HFP . . . D 4 50.235 41.078 -0.585 1 55.46 ? O1P HFP 501 B 1 HETATM 3 O O2P HFP . . . D 4 52.582 40.158 -0.385 1 48.26 ? O2P HFP 501 B 1 HETATM 4 O O3P HFP . . . D 4 52.176 42.441 -1.36 1 54.55 ? O3P HFP 501 B 1 HETATM 5 C C1 HFP . . . D 4 51.789 42.19 1.375 1 50.99 ? C1 HFP 501 B 1 HETATM 6 O O1 HFP . . . D 4 50.543 42.832 1.783 1 52.15 ? O1 HFP 501 B 1 HETATM 7 C C2 HFP . . . D 4 52.89 43.243 1.363 1 44.11 ? C2 HFP 501 B 1 HETATM 8 C C3 HFP . . . D 4 53.89 43.336 2.279 1 36.91 ? C3 HFP 501 B 1 HETATM 9 C C4 HFP . . . D 4 53.987 42.36 3.44 1 40.34 ? C4 HFP 501 B 1 HETATM 10 C C5 HFP . . . D 4 54.95 44.426 2.155 1 32.12 ? C5 HFP 501 B 1 HETATM 11 C C6 HFP . . . D 4 55.666 44.392 0.766 1 23.38 ? C6 HFP 501 B 1 HETATM 12 C C7 HFP . . . D 4 56.964 45.202 0.774 1 19.46 ? C7 HFP 501 B 1 HETATM 13 C C8 HFP . . . D 4 57.388 45.921 -0.297 1 18.29 ? C8 HFP 501 B 1 HETATM 14 C C9 HFP . . . D 4 56.567 45.955 -1.575 1 19.43 ? C9 HFP 501 B 1 HETATM 15 C C10 HFP . . . D 4 58.704 46.713 -0.288 1 20.02 ? C10 HFP 501 B 1 HETATM 16 C C11 HFP . . . D 4 58.746 47.862 0.683 1 19.74 ? C11 HFP 501 B 1 HETATM 17 C C12 HFP . . . D 4 60.108 48.536 0.552 1 19.85 ? C12 HFP 501 B 1 HETATM 18 C C13 HFP . . . D 4 60.523 49.612 1.284 1 24.51 ? C13 HFP 501 B 1 HETATM 19 C C14 HFP . . . D 4 59.666 50.263 2.346 1 22.12 ? C14 HFP 501 B 1 HETATM 20 C C15 HFP . . . D 4 61.908 50.198 1.06 1 24.48 ? C15 HFP 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 20 #