data_1NID # _model_server_result.job_id 04_EKDXNqKqo68UkC6Kwwg _model_server_result.datetime_utc '2024-11-08 21:06:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 1NID # _exptl.entry_id 1NID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NID _cell.length_a 97.6 _cell.length_b 97.6 _cell.length_c 97.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NID _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 95 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A NE2 HIS 135 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 A SG CYS 136 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 A ND1 HIS 145 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 A SD MET 150 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc7 A NE2 HIS 306 A HIS 306 9_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 C CU CU . A CU 502 1_555 D N NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc9 C CU CU . A CU 502 1_555 D O1 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc10 C CU CU . A CU 502 1_555 D O2 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 237 n n N O2 NO2 sing 238 n n # _atom_sites.entry_id 1NID _atom_sites.fract_transf_matrix[1][1] 0.010246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 NO2 A 1 503 503 NO2 NO2 . E 4 HOH A 1 1009 1009 HOH HOH . E 4 HOH A 2 1016 1016 HOH HOH . E 4 HOH A 3 1017 1017 HOH HOH . E 4 HOH A 4 1019 1019 HOH HOH . E 4 HOH A 5 1020 1020 HOH HOH . E 4 HOH A 6 1021 1021 HOH HOH . E 4 HOH A 7 1025 1025 HOH HOH . E 4 HOH A 8 1027 1027 HOH HOH . E 4 HOH A 9 1028 1028 HOH HOH . E 4 HOH A 10 1029 1029 HOH HOH . E 4 HOH A 11 1030 1030 HOH HOH . E 4 HOH A 12 1032 1032 HOH HOH . E 4 HOH A 13 1036 1036 HOH HOH . E 4 HOH A 14 1042 1042 HOH HOH . E 4 HOH A 15 1044 1044 HOH HOH . E 4 HOH A 16 1047 1047 HOH HOH . E 4 HOH A 17 1051 1051 HOH HOH . E 4 HOH A 18 1054 1054 HOH HOH . E 4 HOH A 19 1055 1055 HOH HOH . E 4 HOH A 20 1057 1057 HOH HOH . E 4 HOH A 21 1058 1058 HOH HOH . E 4 HOH A 22 1060 1060 HOH HOH . E 4 HOH A 23 1065 1065 HOH HOH . E 4 HOH A 24 1067 1067 HOH HOH . E 4 HOH A 25 1068 1068 HOH HOH . E 4 HOH A 26 1072 1072 HOH HOH . E 4 HOH A 27 1074 1074 HOH HOH . E 4 HOH A 28 1076 1076 HOH HOH . E 4 HOH A 29 1077 1077 HOH HOH . E 4 HOH A 30 1078 1078 HOH HOH . E 4 HOH A 31 1079 1079 HOH HOH . E 4 HOH A 32 1082 1082 HOH HOH . E 4 HOH A 33 1091 1091 HOH HOH . E 4 HOH A 34 1092 1092 HOH HOH . E 4 HOH A 35 1094 1094 HOH HOH . E 4 HOH A 36 1098 1098 HOH HOH . E 4 HOH A 37 1100 1100 HOH HOH . E 4 HOH A 38 1101 1101 HOH HOH . E 4 HOH A 39 1102 1102 HOH HOH . E 4 HOH A 40 1103 1103 HOH HOH . E 4 HOH A 41 1106 1106 HOH HOH . E 4 HOH A 42 1110 1110 HOH HOH . E 4 HOH A 43 1113 1113 HOH HOH . E 4 HOH A 44 1117 1117 HOH HOH . E 4 HOH A 45 1120 1120 HOH HOH . E 4 HOH A 46 1121 1121 HOH HOH . E 4 HOH A 47 1127 1127 HOH HOH . E 4 HOH A 48 1137 1137 HOH HOH . E 4 HOH A 49 1139 1139 HOH HOH . E 4 HOH A 50 1140 1140 HOH HOH . E 4 HOH A 51 1142 1142 HOH HOH . E 4 HOH A 52 1144 1144 HOH HOH . E 4 HOH A 53 1145 1145 HOH HOH . E 4 HOH A 54 1147 1147 HOH HOH . E 4 HOH A 55 1149 1149 HOH HOH . E 4 HOH A 56 1152 1152 HOH HOH . E 4 HOH A 57 1159 1159 HOH HOH . E 4 HOH A 58 1160 1160 HOH HOH . E 4 HOH A 59 1163 1163 HOH HOH . E 4 HOH A 60 1164 1164 HOH HOH . E 4 HOH A 61 1166 1166 HOH HOH . E 4 HOH A 62 1170 1170 HOH HOH . E 4 HOH A 63 1171 1171 HOH HOH . E 4 HOH A 64 1173 1173 HOH HOH . E 4 HOH A 65 1179 1179 HOH HOH . E 4 HOH A 66 1180 1180 HOH HOH . E 4 HOH A 67 1181 1181 HOH HOH . E 4 HOH A 68 1184 1184 HOH HOH . E 4 HOH A 69 1185 1185 HOH HOH . E 4 HOH A 70 1187 1187 HOH HOH . E 4 HOH A 71 1189 1189 HOH HOH . E 4 HOH A 72 1190 1190 HOH HOH . E 4 HOH A 73 1192 1192 HOH HOH . E 4 HOH A 74 1193 1193 HOH HOH . E 4 HOH A 75 1194 1194 HOH HOH . E 4 HOH A 76 1195 1195 HOH HOH . E 4 HOH A 77 1196 1196 HOH HOH . E 4 HOH A 78 1201 1201 HOH HOH . E 4 HOH A 79 1204 1204 HOH HOH . E 4 HOH A 80 1205 1205 HOH HOH . E 4 HOH A 81 1208 1208 HOH HOH . E 4 HOH A 82 1213 1213 HOH HOH . E 4 HOH A 83 1214 1214 HOH HOH . E 4 HOH A 84 1215 1215 HOH HOH . E 4 HOH A 85 1216 1216 HOH HOH . E 4 HOH A 86 1221 1221 HOH HOH . E 4 HOH A 87 1224 1224 HOH HOH . E 4 HOH A 88 1225 1225 HOH HOH . E 4 HOH A 89 1229 1229 HOH HOH . E 4 HOH A 90 1230 1230 HOH HOH . E 4 HOH A 91 1231 1231 HOH HOH . E 4 HOH A 92 1232 1232 HOH HOH . E 4 HOH A 93 1235 1235 HOH HOH . E 4 HOH A 94 1237 1237 HOH HOH . E 4 HOH A 95 1251 1251 HOH HOH . E 4 HOH A 96 1253 1253 HOH HOH . E 4 HOH A 97 1262 1262 HOH HOH . E 4 HOH A 98 1266 1266 HOH HOH . E 4 HOH A 99 1267 1267 HOH HOH . E 4 HOH A 100 1273 1273 HOH HOH . E 4 HOH A 101 1274 1274 HOH HOH . E 4 HOH A 102 1275 1275 HOH HOH . E 4 HOH A 103 1277 1277 HOH HOH . E 4 HOH A 104 1278 1278 HOH HOH . E 4 HOH A 105 1279 1279 HOH HOH . E 4 HOH A 106 1282 1282 HOH HOH . E 4 HOH A 107 1294 1294 HOH HOH . E 4 HOH A 108 1296 1296 HOH HOH . E 4 HOH A 109 1298 1298 HOH HOH . E 4 HOH A 110 1300 1300 HOH HOH . E 4 HOH A 111 1303 1303 HOH HOH . E 4 HOH A 112 1310 1310 HOH HOH . E 4 HOH A 113 1311 1311 HOH HOH . E 4 HOH A 114 1312 1312 HOH HOH . E 4 HOH A 115 1313 1313 HOH HOH . E 4 HOH A 116 1315 1315 HOH HOH . E 4 HOH A 117 1317 1317 HOH HOH . E 4 HOH A 118 1321 1321 HOH HOH . E 4 HOH A 119 1325 1325 HOH HOH . E 4 HOH A 120 1326 1326 HOH HOH . E 4 HOH A 121 1328 1328 HOH HOH . E 4 HOH A 122 1329 1329 HOH HOH . E 4 HOH A 123 1336 1336 HOH HOH . E 4 HOH A 124 1337 1337 HOH HOH . E 4 HOH A 125 2019 2019 HOH HOH . E 4 HOH A 126 2025 2025 HOH HOH . E 4 HOH A 127 2028 2028 HOH HOH . E 4 HOH A 128 2029 2029 HOH HOH . E 4 HOH A 129 2030 2030 HOH HOH . E 4 HOH A 130 2042 2042 HOH HOH . E 4 HOH A 131 2058 2058 HOH HOH . E 4 HOH A 132 2060 2060 HOH HOH . E 4 HOH A 133 2079 2079 HOH HOH . E 4 HOH A 134 2082 2082 HOH HOH . E 4 HOH A 135 2103 2103 HOH HOH . E 4 HOH A 136 2121 2121 HOH HOH . E 4 HOH A 137 2127 2127 HOH HOH . E 4 HOH A 138 2137 2137 HOH HOH . E 4 HOH A 139 2147 2147 HOH HOH . E 4 HOH A 140 2159 2159 HOH HOH . E 4 HOH A 141 2163 2163 HOH HOH . E 4 HOH A 142 2171 2171 HOH HOH . E 4 HOH A 143 2180 2180 HOH HOH . E 4 HOH A 144 2181 2181 HOH HOH . E 4 HOH A 145 2187 2187 HOH HOH . E 4 HOH A 146 2189 2189 HOH HOH . E 4 HOH A 147 2204 2204 HOH HOH . E 4 HOH A 148 2221 2221 HOH HOH . E 4 HOH A 149 2224 2224 HOH HOH . E 4 HOH A 150 2267 2267 HOH HOH . E 4 HOH A 151 2277 2277 HOH HOH . E 4 HOH A 152 2279 2279 HOH HOH . E 4 HOH A 153 2282 2282 HOH HOH . E 4 HOH A 154 2296 2296 HOH HOH . E 4 HOH A 155 2300 2300 HOH HOH . E 4 HOH A 156 2325 2325 HOH HOH . E 4 HOH A 157 2336 2336 HOH HOH . E 4 HOH A 158 3029 3029 HOH HOH . E 4 HOH A 159 3058 3058 HOH HOH . E 4 HOH A 160 3060 3060 HOH HOH . E 4 HOH A 161 3127 3127 HOH HOH . E 4 HOH A 162 3137 3137 HOH HOH . E 4 HOH A 163 3171 3171 HOH HOH . E 4 HOH A 164 3189 3189 HOH HOH . E 4 HOH A 165 3221 3221 HOH HOH . E 4 HOH A 166 3267 3267 HOH HOH . E 4 HOH A 167 3275 3275 HOH HOH . E 4 HOH A 168 3277 3277 HOH HOH . E 4 HOH A 169 3282 3282 HOH HOH . E 4 HOH A 170 3296 3296 HOH HOH . E 4 HOH A 171 3300 3300 HOH HOH . E 4 HOH A 172 3325 3325 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . D 3 17.485 -8.754 9.745 0.5 26.1 ? N NO2 503 A 1 HETATM 2 O O1 NO2 . . . D 3 16.789 -7.243 9.954 0.5 26.54 ? O1 NO2 503 A 1 HETATM 3 O O2 NO2 . . . D 3 16.328 -9.414 8.753 0.5 24.22 ? O2 NO2 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #