data_1NIH
#
_model_server_result.job_id            Xuh7s5Wo_voRhqAXrZtC-A 
_model_server_result.datetime_utc      '2025-02-28 18:10:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    1NIH 
#
_exptl.entry_id    1NIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              619.336 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING NI(II)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.42 
_cell.angle_gamma         90 
_cell.entry_id            1NIH 
_cell.length_a            63.18 
_cell.length_b            82.26 
_cell.length_c            55.06 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc2 F FE HEM . B HEM 201 1_555 G C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc3 D NE2 HIS 92 D HIS 92 1_555 J FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc4 J FE HEM . D HEM 201 1_555 K C CMO . D CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? 
#
_chem_comp.formula           'C34 H32 N4 Ni O4' 
_chem_comp.formula_weight    619.336 
_chem_comp.id                HNI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING NI(II)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NI NA HNI sing 233 n n 
NI NB HNI sing 234 n n 
NI NC HNI sing 235 n n 
NI ND HNI sing 236 n n 
CHA C1A HNI doub 237 n n 
CHA C4D HNI sing 238 n n 
CHA HHA HNI sing 239 n n 
CHB C4A HNI sing 240 n n 
CHB C1B HNI doub 241 n n 
CHB HHB HNI sing 242 n n 
CHC C4B HNI doub 243 n n 
CHC C1C HNI sing 244 n n 
CHC HHC HNI sing 245 n n 
CHD C4C HNI doub 246 n n 
CHD C1D HNI sing 247 n n 
CHD HHD HNI sing 248 n n 
NA C1A HNI sing 249 n n 
NA C4A HNI doub 250 n n 
C1A C2A HNI sing 251 n n 
C2A C3A HNI doub 252 n n 
C2A CAA HNI sing 253 n n 
C3A C4A HNI sing 254 n n 
C3A CMA HNI sing 255 n n 
CMA HMA1 HNI sing 256 n n 
CMA HMA2 HNI sing 257 n n 
CMA HMA3 HNI sing 258 n n 
CAA CBA HNI sing 259 n n 
CAA HAA1 HNI sing 260 n n 
CAA HAA2 HNI sing 261 n n 
CBA CGA HNI sing 262 n n 
CBA HBA1 HNI sing 263 n n 
CBA HBA2 HNI sing 264 n n 
CGA O1A HNI doub 265 n n 
CGA O2A HNI sing 266 n n 
O2A H2A HNI sing 267 n n 
NB C1B HNI sing 268 n n 
NB C4B HNI sing 269 n n 
C1B C2B HNI sing 270 n n 
C2B C3B HNI doub 271 n n 
C2B CMB HNI sing 272 n n 
C3B C4B HNI sing 273 n n 
C3B CAB HNI sing 274 n n 
CMB HMB1 HNI sing 275 n n 
CMB HMB2 HNI sing 276 n n 
CMB HMB3 HNI sing 277 n n 
CAB CBB HNI doub 278 n n 
CAB HAB HNI sing 279 n n 
CBB HBB1 HNI sing 280 n n 
CBB HBB2 HNI sing 281 n n 
NC C1C HNI doub 282 n n 
NC C4C HNI sing 283 n n 
C1C C2C HNI sing 284 n n 
C2C C3C HNI doub 285 n n 
C2C CMC HNI sing 286 n n 
C3C C4C HNI sing 287 n n 
C3C CAC HNI sing 288 n n 
CMC HMC1 HNI sing 289 n n 
CMC HMC2 HNI sing 290 n n 
CMC HMC3 HNI sing 291 n n 
CAC CBC HNI doub 292 n n 
CAC HAC HNI sing 293 n n 
CBC HBC1 HNI sing 294 n n 
CBC HBC2 HNI sing 295 n n 
ND C1D HNI sing 296 n y 
ND C4D HNI sing 297 n y 
C1D C2D HNI doub 298 n y 
C2D C3D HNI sing 299 n y 
C2D CMD HNI sing 300 n n 
C3D C4D HNI doub 301 n y 
C3D CAD HNI sing 302 n n 
CMD HMD1 HNI sing 303 n n 
CMD HMD2 HNI sing 304 n n 
CMD HMD3 HNI sing 305 n n 
CAD CBD HNI sing 306 n n 
CAD HAD1 HNI sing 307 n n 
CAD HAD2 HNI sing 308 n n 
CBD CGD HNI sing 309 n n 
CBD HBD1 HNI sing 310 n n 
CBD HBD2 HNI sing 311 n n 
CGD O1D HNI doub 312 n n 
CGD O2D HNI sing 313 n n 
O2D H2D HNI sing 314 n n 
#
_atom_sites.entry_id                     1NIH 
_atom_sites.fract_transf_matrix[1][1]    0.015828 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002343 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012157 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HNI A 1 201 201 HNI HNI . 
F 4 HEM B 1 201 201 HEM HEM . 
G 5 CMO B 1 202 202 CMO CMO . 
H 6 IHP B 1 203 1 IHP IHP . 
I 3 HNI C 1 201 201 HNI HNI . 
J 4 HEM D 1 201 201 HEM HEM . 
K 5 CMO D 1 202 202 CMO CMO . 
L 7 HOH A 1 692 692 HOH HOH . 
L 7 HOH A 2 693 693 HOH HOH . 
L 7 HOH A 3 694 694 HOH HOH . 
L 7 HOH A 4 695 695 HOH HOH . 
L 7 HOH A 5 696 696 HOH HOH . 
L 7 HOH A 6 697 697 HOH HOH . 
L 7 HOH A 7 698 698 HOH HOH . 
L 7 HOH A 8 699 699 HOH HOH . 
L 7 HOH A 9 700 700 HOH HOH . 
L 7 HOH A 10 701 701 HOH HOH . 
L 7 HOH A 11 703 703 HOH HOH . 
L 7 HOH A 12 705 705 HOH HOH . 
L 7 HOH A 13 706 706 HOH HOH . 
L 7 HOH A 14 707 707 HOH HOH . 
L 7 HOH A 15 708 708 HOH HOH . 
L 7 HOH A 16 711 711 HOH HOH . 
L 7 HOH A 17 738 738 HOH HOH . 
L 7 HOH A 18 740 740 HOH HOH . 
L 7 HOH A 19 742 742 HOH HOH . 
M 7 HOH B 1 702 702 HOH HOH . 
M 7 HOH B 2 704 704 HOH HOH . 
M 7 HOH B 3 709 709 HOH HOH . 
M 7 HOH B 4 710 710 HOH HOH . 
M 7 HOH B 5 714 714 HOH HOH . 
M 7 HOH B 6 715 715 HOH HOH . 
M 7 HOH B 7 716 716 HOH HOH . 
M 7 HOH B 8 718 718 HOH HOH . 
M 7 HOH B 9 721 721 HOH HOH . 
M 7 HOH B 10 722 722 HOH HOH . 
M 7 HOH B 11 723 723 HOH HOH . 
M 7 HOH B 12 724 724 HOH HOH . 
M 7 HOH B 13 743 743 HOH HOH . 
N 7 HOH C 1 712 712 HOH HOH . 
N 7 HOH C 2 713 713 HOH HOH . 
N 7 HOH C 3 717 717 HOH HOH . 
N 7 HOH C 4 719 719 HOH HOH . 
N 7 HOH C 5 720 720 HOH HOH . 
N 7 HOH C 6 725 725 HOH HOH . 
N 7 HOH C 7 726 726 HOH HOH . 
N 7 HOH C 8 727 727 HOH HOH . 
N 7 HOH C 9 728 728 HOH HOH . 
N 7 HOH C 10 729 729 HOH HOH . 
N 7 HOH C 11 730 730 HOH HOH . 
N 7 HOH C 12 741 741 HOH HOH . 
O 7 HOH D 1 731 731 HOH HOH . 
O 7 HOH D 2 732 732 HOH HOH . 
O 7 HOH D 3 733 733 HOH HOH . 
O 7 HOH D 4 734 734 HOH HOH . 
O 7 HOH D 5 735 735 HOH HOH . 
O 7 HOH D 6 736 736 HOH HOH . 
O 7 HOH D 7 737 737 HOH HOH . 
O 7 HOH D 8 739 739 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 NI NI HNI . . . I 3 25.744 6.813 27.527 1 13.37 ? NI HNI 201 C 1 
HETATM 2 C CHA HNI . . . I 3 25.944 6.735 30.849 1 16.04 ? CHA HNI 201 C 1 
HETATM 3 C CHB HNI . . . I 3 28.071 4.507 27.248 1 18.07 ? CHB HNI 201 C 1 
HETATM 4 C CHC HNI . . . I 3 25.171 6.678 24.209 1 4.19 ? CHC HNI 201 C 1 
HETATM 5 C CHD HNI . . . I 3 23.778 9.697 27.663 1 14.39 ? CHD HNI 201 C 1 
HETATM 6 N NA HNI . . . I 3 26.761 5.888 28.741 1 22.5 ? NA HNI 201 C 1 
HETATM 7 C C1A HNI . . . I 3 26.775 5.912 30.133 1 16.58 ? C1A HNI 201 C 1 
HETATM 8 C C2A HNI . . . I 3 27.811 5.093 30.708 1 11.91 ? C2A HNI 201 C 1 
HETATM 9 C C3A HNI . . . I 3 28.412 4.468 29.669 1 19.67 ? C3A HNI 201 C 1 
HETATM 10 C C4A HNI . . . I 3 27.728 4.942 28.483 1 12.27 ? C4A HNI 201 C 1 
HETATM 11 C CMA HNI . . . I 3 29.579 3.516 29.67 1 24.72 ? CMA HNI 201 C 1 
HETATM 12 C CAA HNI . . . I 3 28.183 5.127 32.15 1 22 ? CAA HNI 201 C 1 
HETATM 13 C CBA HNI . . . I 3 27.826 3.88 32.865 1 55.92 ? CBA HNI 201 C 1 
HETATM 14 C CGA HNI . . . I 3 27.729 4.249 34.329 1 55.21 ? CGA HNI 201 C 1 
HETATM 15 O O1A HNI . . . I 3 27.935 5.412 34.718 1 33.03 ? O1A HNI 201 C 1 
HETATM 16 O O2A HNI . . . I 3 27.436 3.334 35.088 1 53.65 ? O2A HNI 201 C 1 
HETATM 17 N NB HNI . . . I 3 26.435 5.806 26.055 1 7.57 ? NB HNI 201 C 1 
HETATM 18 C C1B HNI . . . I 3 27.405 4.87 26.13 1 14.89 ? C1B HNI 201 C 1 
HETATM 19 C C2B HNI . . . I 3 27.641 4.211 24.883 1 0.97 ? C2B HNI 201 C 1 
HETATM 20 C C3B HNI . . . I 3 26.824 4.802 23.968 1 4.44 ? C3B HNI 201 C 1 
HETATM 21 C C4B HNI . . . I 3 26.111 5.818 24.739 1 6.43 ? C4B HNI 201 C 1 
HETATM 22 C CMB HNI . . . I 3 28.617 3.082 24.746 1 13.06 ? CMB HNI 201 C 1 
HETATM 23 C CAB HNI . . . I 3 26.368 4.227 22.646 1 14.89 ? CAB HNI 201 C 1 
HETATM 24 C CBB HNI . . . I 3 27.285 3.988 21.593 1 8.93 ? CBB HNI 201 C 1 
HETATM 25 N NC HNI . . . I 3 24.703 7.989 26.236 1 13.12 ? NC HNI 201 C 1 
HETATM 26 C C1C HNI . . . I 3 24.592 7.747 24.897 1 17.27 ? C1C HNI 201 C 1 
HETATM 27 C C2C HNI . . . I 3 23.878 8.799 24.219 1 9.66 ? C2C HNI 201 C 1 
HETATM 28 C C3C HNI . . . I 3 23.465 9.677 25.182 1 11.56 ? C3C HNI 201 C 1 
HETATM 29 C C4C HNI . . . I 3 23.957 9.138 26.428 1 2.69 ? C4C HNI 201 C 1 
HETATM 30 C CMC HNI . . . I 3 23.531 8.654 22.764 1 10.67 ? CMC HNI 201 C 1 
HETATM 31 C CAC HNI . . . I 3 22.66 10.924 25.06 1 14.05 ? CAC HNI 201 C 1 
HETATM 32 C CBC HNI . . . I 3 22.847 11.77 23.976 1 10.01 ? CBC HNI 201 C 1 
HETATM 33 N ND HNI . . . I 3 25.063 7.926 28.815 1 3.46 ? ND HNI 201 C 1 
HETATM 34 C C1D HNI . . . I 3 24.268 9.103 28.794 1 9.73 ? C1D HNI 201 C 1 
HETATM 35 C C2D HNI . . . I 3 24.023 9.643 30.104 1 18.88 ? C2D HNI 201 C 1 
HETATM 36 C C3D HNI . . . I 3 24.611 8.807 30.973 1 11.76 ? C3D HNI 201 C 1 
HETATM 37 C C4D HNI . . . I 3 25.219 7.752 30.208 1 13.61 ? C4D HNI 201 C 1 
HETATM 38 C CMD HNI . . . I 3 23.143 10.831 30.403 1 9.57 ? CMD HNI 201 C 1 
HETATM 39 C CAD HNI . . . I 3 24.826 9.015 32.448 1 12.5 ? CAD HNI 201 C 1 
HETATM 40 C CBD HNI . . . I 3 26.073 9.857 32.59 1 21.44 ? CBD HNI 201 C 1 
HETATM 41 C CGD HNI . . . I 3 26.302 10.447 33.963 1 24.97 ? CGD HNI 201 C 1 
HETATM 42 O O1D HNI . . . I 3 27.463 10.676 34.283 1 38.92 ? O1D HNI 201 C 1 
HETATM 43 O O2D HNI . . . I 3 25.357 10.67 34.709 1 24.92 ? O2D HNI 201 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#