data_1NIH
#
_model_server_result.job_id            GqTXc6pUlSUvYmXu9FW3nA 
_model_server_result.datetime_utc      '2025-02-28 18:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    1NIH 
#
_exptl.entry_id    1NIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.42 
_cell.angle_gamma         90 
_cell.entry_id            1NIH 
_cell.length_a            63.18 
_cell.length_b            82.26 
_cell.length_c            55.06 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc2 F FE HEM . B HEM 201 1_555 G C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc3 D NE2 HIS 92 D HIS 92 1_555 J FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc4 J FE HEM . D HEM 201 1_555 K C CMO . D CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 130 n n 
CHA C4D HEM doub 131 n n 
CHA HHA HEM sing 132 n n 
CHB C4A HEM sing 133 n n 
CHB C1B HEM doub 134 n n 
CHB HHB HEM sing 135 n n 
CHC C4B HEM sing 136 n n 
CHC C1C HEM doub 137 n n 
CHC HHC HEM sing 138 n n 
CHD C4C HEM doub 139 n n 
CHD C1D HEM sing 140 n n 
CHD HHD HEM sing 141 n n 
C1A C2A HEM doub 142 n y 
C1A NA HEM sing 143 n y 
C2A C3A HEM sing 144 n y 
C2A CAA HEM sing 145 n n 
C3A C4A HEM doub 146 n y 
C3A CMA HEM sing 147 n n 
C4A NA HEM sing 148 n y 
CMA HMA HEM sing 149 n n 
CMA HMAA HEM sing 150 n n 
CMA HMAB HEM sing 151 n n 
CAA CBA HEM sing 152 n n 
CAA HAA HEM sing 153 n n 
CAA HAAA HEM sing 154 n n 
CBA CGA HEM sing 155 n n 
CBA HBA HEM sing 156 n n 
CBA HBAA HEM sing 157 n n 
CGA O1A HEM doub 158 n n 
CGA O2A HEM sing 159 n n 
C1B C2B HEM sing 160 n n 
C1B NB HEM sing 161 n n 
C2B C3B HEM doub 162 n n 
C2B CMB HEM sing 163 n n 
C3B C4B HEM sing 164 n n 
C3B CAB HEM sing 165 n n 
C4B NB HEM doub 166 n n 
CMB HMB HEM sing 167 n n 
CMB HMBA HEM sing 168 n n 
CMB HMBB HEM sing 169 n n 
CAB CBB HEM doub 170 n n 
CAB HAB HEM sing 171 n n 
CBB HBB HEM sing 172 n n 
CBB HBBA HEM sing 173 n n 
C1C C2C HEM sing 174 n y 
C1C NC HEM sing 175 n y 
C2C C3C HEM doub 176 n y 
C2C CMC HEM sing 177 n n 
C3C C4C HEM sing 178 n y 
C3C CAC HEM sing 179 n n 
C4C NC HEM sing 180 n y 
CMC HMC HEM sing 181 n n 
CMC HMCA HEM sing 182 n n 
CMC HMCB HEM sing 183 n n 
CAC CBC HEM doub 184 n n 
CAC HAC HEM sing 185 n n 
CBC HBC HEM sing 186 n n 
CBC HBCA HEM sing 187 n n 
C1D C2D HEM sing 188 n n 
C1D ND HEM doub 189 n n 
C2D C3D HEM doub 190 n n 
C2D CMD HEM sing 191 n n 
C3D C4D HEM sing 192 n n 
C3D CAD HEM sing 193 n n 
C4D ND HEM sing 194 n n 
CMD HMD HEM sing 195 n n 
CMD HMDA HEM sing 196 n n 
CMD HMDB HEM sing 197 n n 
CAD CBD HEM sing 198 n n 
CAD HAD HEM sing 199 n n 
CAD HADA HEM sing 200 n n 
CBD CGD HEM sing 201 n n 
CBD HBD HEM sing 202 n n 
CBD HBDA HEM sing 203 n n 
CGD O1D HEM doub 204 n n 
CGD O2D HEM sing 205 n n 
O2A H2A HEM sing 206 n n 
O2D H2D HEM sing 207 n n 
FE NA HEM sing 208 n n 
FE NB HEM sing 209 n n 
FE NC HEM sing 210 n n 
FE ND HEM sing 211 n n 
#
_atom_sites.entry_id                     1NIH 
_atom_sites.fract_transf_matrix[1][1]    0.015828 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002343 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012157 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HNI A 1 201 201 HNI HNI . 
F 4 HEM B 1 201 201 HEM HEM . 
G 5 CMO B 1 202 202 CMO CMO . 
H 6 IHP B 1 203 1 IHP IHP . 
I 3 HNI C 1 201 201 HNI HNI . 
J 4 HEM D 1 201 201 HEM HEM . 
K 5 CMO D 1 202 202 CMO CMO . 
L 7 HOH A 1 692 692 HOH HOH . 
L 7 HOH A 2 693 693 HOH HOH . 
L 7 HOH A 3 694 694 HOH HOH . 
L 7 HOH A 4 695 695 HOH HOH . 
L 7 HOH A 5 696 696 HOH HOH . 
L 7 HOH A 6 697 697 HOH HOH . 
L 7 HOH A 7 698 698 HOH HOH . 
L 7 HOH A 8 699 699 HOH HOH . 
L 7 HOH A 9 700 700 HOH HOH . 
L 7 HOH A 10 701 701 HOH HOH . 
L 7 HOH A 11 703 703 HOH HOH . 
L 7 HOH A 12 705 705 HOH HOH . 
L 7 HOH A 13 706 706 HOH HOH . 
L 7 HOH A 14 707 707 HOH HOH . 
L 7 HOH A 15 708 708 HOH HOH . 
L 7 HOH A 16 711 711 HOH HOH . 
L 7 HOH A 17 738 738 HOH HOH . 
L 7 HOH A 18 740 740 HOH HOH . 
L 7 HOH A 19 742 742 HOH HOH . 
M 7 HOH B 1 702 702 HOH HOH . 
M 7 HOH B 2 704 704 HOH HOH . 
M 7 HOH B 3 709 709 HOH HOH . 
M 7 HOH B 4 710 710 HOH HOH . 
M 7 HOH B 5 714 714 HOH HOH . 
M 7 HOH B 6 715 715 HOH HOH . 
M 7 HOH B 7 716 716 HOH HOH . 
M 7 HOH B 8 718 718 HOH HOH . 
M 7 HOH B 9 721 721 HOH HOH . 
M 7 HOH B 10 722 722 HOH HOH . 
M 7 HOH B 11 723 723 HOH HOH . 
M 7 HOH B 12 724 724 HOH HOH . 
M 7 HOH B 13 743 743 HOH HOH . 
N 7 HOH C 1 712 712 HOH HOH . 
N 7 HOH C 2 713 713 HOH HOH . 
N 7 HOH C 3 717 717 HOH HOH . 
N 7 HOH C 4 719 719 HOH HOH . 
N 7 HOH C 5 720 720 HOH HOH . 
N 7 HOH C 6 725 725 HOH HOH . 
N 7 HOH C 7 726 726 HOH HOH . 
N 7 HOH C 8 727 727 HOH HOH . 
N 7 HOH C 9 728 728 HOH HOH . 
N 7 HOH C 10 729 729 HOH HOH . 
N 7 HOH C 11 730 730 HOH HOH . 
N 7 HOH C 12 741 741 HOH HOH . 
O 7 HOH D 1 731 731 HOH HOH . 
O 7 HOH D 2 732 732 HOH HOH . 
O 7 HOH D 3 733 733 HOH HOH . 
O 7 HOH D 4 734 734 HOH HOH . 
O 7 HOH D 5 735 735 HOH HOH . 
O 7 HOH D 6 736 736 HOH HOH . 
O 7 HOH D 7 737 737 HOH HOH . 
O 7 HOH D 8 739 739 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 4 21.611 13.678 -11.021 1 20.22 ? CHA HEM 201 D 1 
HETATM 2 C CHB HEM . . . J 4 22.952 17.116 -7.782 1 10.63 ? CHB HEM 201 D 1 
HETATM 3 C CHC HEM . . . J 4 21.957 13.925 -4.235 1 4.83 ? CHC HEM 201 D 1 
HETATM 4 C CHD HEM . . . J 4 20.628 10.594 -7.492 1 10.29 ? CHD HEM 201 D 1 
HETATM 5 C C1A HEM . . . J 4 22.09 14.844 -10.422 1 44.41 ? C1A HEM 201 D 1 
HETATM 6 C C2A HEM . . . J 4 22.637 15.918 -11.219 1 25.43 ? C2A HEM 201 D 1 
HETATM 7 C C3A HEM . . . J 4 23.018 16.884 -10.316 1 18.23 ? C3A HEM 201 D 1 
HETATM 8 C C4A HEM . . . J 4 22.724 16.401 -8.987 1 5.11 ? C4A HEM 201 D 1 
HETATM 9 C CMA HEM . . . J 4 23.553 18.265 -10.608 1 23.77 ? CMA HEM 201 D 1 
HETATM 10 C CAA HEM . . . J 4 22.575 15.975 -12.76 1 16.4 ? CAA HEM 201 D 1 
HETATM 11 C CBA HEM . . . J 4 21.482 16.849 -13.48 1 53.96 ? CBA HEM 201 D 1 
HETATM 12 C CGA HEM . . . J 4 21.555 16.682 -15.005 1 77.23 ? CGA HEM 201 D 1 
HETATM 13 O O1A HEM . . . J 4 22.369 15.847 -15.394 1 55.87 ? O1A HEM 201 D 1 
HETATM 14 O O2A HEM . . . J 4 20.845 17.346 -15.784 1 63.6 ? O2A HEM 201 D 1 
HETATM 15 C C1B HEM . . . J 4 22.74 16.571 -6.488 1 4.64 ? C1B HEM 201 D 1 
HETATM 16 C C2B HEM . . . J 4 22.939 17.239 -5.21 1 9.92 ? C2B HEM 201 D 1 
HETATM 17 C C3B HEM . . . J 4 22.655 16.301 -4.249 1 10.88 ? C3B HEM 201 D 1 
HETATM 18 C C4B HEM . . . J 4 22.282 15.093 -4.922 1 8.36 ? C4B HEM 201 D 1 
HETATM 19 C CMB HEM . . . J 4 23.218 18.714 -5.055 1 11.08 ? CMB HEM 201 D 1 
HETATM 20 C CAB HEM . . . J 4 22.473 16.393 -2.777 1 9.53 ? CAB HEM 201 D 1 
HETATM 21 C CBB HEM . . . J 4 23.337 17.058 -1.917 1 27.82 ? CBB HEM 201 D 1 
HETATM 22 C C1C HEM . . . J 4 21.538 12.737 -4.852 1 16.21 ? C1C HEM 201 D 1 
HETATM 23 C C2C HEM . . . J 4 21.271 11.515 -4.141 1 9.11 ? C2C HEM 201 D 1 
HETATM 24 C C3C HEM . . . J 4 20.891 10.576 -5.073 1 10.08 ? C3C HEM 201 D 1 
HETATM 25 C C4C HEM . . . J 4 20.933 11.24 -6.335 1 14.21 ? C4C HEM 201 D 1 
HETATM 26 C CMC HEM . . . J 4 21.828 11.32 -2.768 1 14.47 ? CMC HEM 201 D 1 
HETATM 27 C CAC HEM . . . J 4 20.674 9.086 -5.013 1 14.13 ? CAC HEM 201 D 1 
HETATM 28 C CBC HEM . . . J 4 21.042 8.223 -3.959 1 9.16 ? CBC HEM 201 D 1 
HETATM 29 C C1D HEM . . . J 4 20.846 11.145 -8.719 1 17.93 ? C1D HEM 201 D 1 
HETATM 30 C C2D HEM . . . J 4 20.777 10.378 -9.93 1 14.34 ? C2D HEM 201 D 1 
HETATM 31 C C3D HEM . . . J 4 21.054 11.215 -10.917 1 11.26 ? C3D HEM 201 D 1 
HETATM 32 C C4D HEM . . . J 4 21.323 12.51 -10.32 1 17.33 ? C4D HEM 201 D 1 
HETATM 33 C CMD HEM . . . J 4 20.182 8.995 -10.024 1 21.94 ? CMD HEM 201 D 1 
HETATM 34 C CAD HEM . . . J 4 21.22 10.84 -12.357 1 11.81 ? CAD HEM 201 D 1 
HETATM 35 C CBD HEM . . . J 4 22.396 9.945 -12.652 1 47.02 ? CBD HEM 201 D 1 
HETATM 36 C CGD HEM . . . J 4 22.278 9.784 -14.143 1 17.78 ? CGD HEM 201 D 1 
HETATM 37 O O1D HEM . . . J 4 22.504 8.705 -14.667 1 29.19 ? O1D HEM 201 D 1 
HETATM 38 O O2D HEM . . . J 4 21.962 10.779 -14.78 1 39.16 ? O2D HEM 201 D 1 
HETATM 39 N NA HEM . . . J 4 22.187 15.094 -9.037 1 9.01 ? NA HEM 201 D 1 
HETATM 40 N NB HEM . . . J 4 22.24 15.275 -6.293 1 6.06 ? NB HEM 201 D 1 
HETATM 41 N NC HEM . . . J 4 21.358 12.572 -6.231 1 6.32 ? NC HEM 201 D 1 
HETATM 42 N ND HEM . . . J 4 21.26 12.479 -8.932 1 4.51 ? ND HEM 201 D 1 
HETATM 43 FE FE HEM . . . J 4 21.574 13.737 -7.805 1 16.77 ? FE HEM 201 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#