data_1NIH # _model_server_result.job_id KZd-NxtZLKhRYfVRzeHl1A _model_server_result.datetime_utc '2025-02-28 18:39:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 1NIH # _exptl.entry_id 1NIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.42 _cell.angle_gamma 90 _cell.entry_id 1NIH _cell.length_a 63.18 _cell.length_b 82.26 _cell.length_c 55.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 F FE HEM . B HEM 201 1_555 G C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc3 D NE2 HIS 92 D HIS 92 1_555 J FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 J FE HEM . D HEM 201 1_555 K C CMO . D CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 317 n n C1 C6 IHP sing 318 n n C1 O11 IHP sing 319 n n C1 H1 IHP sing 320 n n C2 C3 IHP sing 321 n n C2 O12 IHP sing 322 n n C2 H2 IHP sing 323 n n C3 C4 IHP sing 324 n n C3 O13 IHP sing 325 n n C3 H3 IHP sing 326 n n C4 C5 IHP sing 327 n n C4 O14 IHP sing 328 n n C4 H4 IHP sing 329 n n C5 C6 IHP sing 330 n n C5 O15 IHP sing 331 n n C5 H5 IHP sing 332 n n C6 O16 IHP sing 333 n n C6 H6 IHP sing 334 n n O11 P1 IHP sing 335 n n P1 O21 IHP doub 336 n n P1 O31 IHP sing 337 n n P1 O41 IHP sing 338 n n O31 H31 IHP sing 339 n n O41 H41 IHP sing 340 n n O12 P2 IHP sing 341 n n P2 O22 IHP doub 342 n n P2 O32 IHP sing 343 n n P2 O42 IHP sing 344 n n O32 H32 IHP sing 345 n n O42 H42 IHP sing 346 n n O13 P3 IHP sing 347 n n P3 O23 IHP doub 348 n n P3 O33 IHP sing 349 n n P3 O43 IHP sing 350 n n O33 H33 IHP sing 351 n n O43 H43 IHP sing 352 n n O14 P4 IHP sing 353 n n P4 O24 IHP doub 354 n n P4 O34 IHP sing 355 n n P4 O44 IHP sing 356 n n O34 H34 IHP sing 357 n n O44 H44 IHP sing 358 n n O15 P5 IHP sing 359 n n P5 O25 IHP doub 360 n n P5 O35 IHP sing 361 n n P5 O45 IHP sing 362 n n O35 H35 IHP sing 363 n n O45 H45 IHP sing 364 n n O16 P6 IHP sing 365 n n P6 O26 IHP doub 366 n n P6 O36 IHP sing 367 n n P6 O46 IHP sing 368 n n O36 H36 IHP sing 369 n n O46 H46 IHP sing 370 n n # _atom_sites.entry_id 1NIH _atom_sites.fract_transf_matrix[1][1] 0.015828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002343 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HNI A 1 201 201 HNI HNI . F 4 HEM B 1 201 201 HEM HEM . G 5 CMO B 1 202 202 CMO CMO . H 6 IHP B 1 203 1 IHP IHP . I 3 HNI C 1 201 201 HNI HNI . J 4 HEM D 1 201 201 HEM HEM . K 5 CMO D 1 202 202 CMO CMO . L 7 HOH A 1 692 692 HOH HOH . L 7 HOH A 2 693 693 HOH HOH . L 7 HOH A 3 694 694 HOH HOH . L 7 HOH A 4 695 695 HOH HOH . L 7 HOH A 5 696 696 HOH HOH . L 7 HOH A 6 697 697 HOH HOH . L 7 HOH A 7 698 698 HOH HOH . L 7 HOH A 8 699 699 HOH HOH . L 7 HOH A 9 700 700 HOH HOH . L 7 HOH A 10 701 701 HOH HOH . L 7 HOH A 11 703 703 HOH HOH . L 7 HOH A 12 705 705 HOH HOH . L 7 HOH A 13 706 706 HOH HOH . L 7 HOH A 14 707 707 HOH HOH . L 7 HOH A 15 708 708 HOH HOH . L 7 HOH A 16 711 711 HOH HOH . L 7 HOH A 17 738 738 HOH HOH . L 7 HOH A 18 740 740 HOH HOH . L 7 HOH A 19 742 742 HOH HOH . M 7 HOH B 1 702 702 HOH HOH . M 7 HOH B 2 704 704 HOH HOH . M 7 HOH B 3 709 709 HOH HOH . M 7 HOH B 4 710 710 HOH HOH . M 7 HOH B 5 714 714 HOH HOH . M 7 HOH B 6 715 715 HOH HOH . M 7 HOH B 7 716 716 HOH HOH . M 7 HOH B 8 718 718 HOH HOH . M 7 HOH B 9 721 721 HOH HOH . M 7 HOH B 10 722 722 HOH HOH . M 7 HOH B 11 723 723 HOH HOH . M 7 HOH B 12 724 724 HOH HOH . M 7 HOH B 13 743 743 HOH HOH . N 7 HOH C 1 712 712 HOH HOH . N 7 HOH C 2 713 713 HOH HOH . N 7 HOH C 3 717 717 HOH HOH . N 7 HOH C 4 719 719 HOH HOH . N 7 HOH C 5 720 720 HOH HOH . N 7 HOH C 6 725 725 HOH HOH . N 7 HOH C 7 726 726 HOH HOH . N 7 HOH C 8 727 727 HOH HOH . N 7 HOH C 9 728 728 HOH HOH . N 7 HOH C 10 729 729 HOH HOH . N 7 HOH C 11 730 730 HOH HOH . N 7 HOH C 12 741 741 HOH HOH . O 7 HOH D 1 731 731 HOH HOH . O 7 HOH D 2 732 732 HOH HOH . O 7 HOH D 3 733 733 HOH HOH . O 7 HOH D 4 734 734 HOH HOH . O 7 HOH D 5 735 735 HOH HOH . O 7 HOH D 6 736 736 HOH HOH . O 7 HOH D 7 737 737 HOH HOH . O 7 HOH D 8 739 739 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . H 6 10.647 29.213 6.431 1 41.02 ? C1 IHP 203 B 1 HETATM 2 C C2 IHP . . . H 6 9.808 30.429 6.807 1 42.64 ? C2 IHP 203 B 1 HETATM 3 C C3 IHP . . . H 6 9.351 30.472 8.251 1 42.54 ? C3 IHP 203 B 1 HETATM 4 C C4 IHP . . . H 6 8.542 29.258 8.575 1 41.24 ? C4 IHP 203 B 1 HETATM 5 C C5 IHP . . . H 6 9.12 27.895 8.123 1 42.75 ? C5 IHP 203 B 1 HETATM 6 C C6 IHP . . . H 6 9.79 27.922 6.715 1 40.5 ? C6 IHP 203 B 1 HETATM 7 O O11 IHP . . . H 6 11.891 29.16 7.147 1 41.71 ? O11 IHP 203 B 1 HETATM 8 P P1 IHP . . . H 6 13.007 28.035 6.826 1 42.19 ? P1 IHP 203 B 1 HETATM 9 O O21 IHP . . . H 6 13.252 28.043 5.34 1 41.36 ? O21 IHP 203 B 1 HETATM 10 O O31 IHP . . . H 6 14.205 28.515 7.64 1 41.54 ? O31 IHP 203 B 1 HETATM 11 O O41 IHP . . . H 6 12.486 26.726 7.315 1 40.7 ? O41 IHP 203 B 1 HETATM 12 O O12 IHP . . . H 6 10.474 31.608 6.454 1 41.84 ? O12 IHP 203 B 1 HETATM 13 P P2 IHP . . . H 6 11.205 31.634 4.993 1 40.7 ? P2 IHP 203 B 1 HETATM 14 O O22 IHP . . . H 6 10.369 30.82 4.019 1 40.43 ? O22 IHP 203 B 1 HETATM 15 O O32 IHP . . . H 6 12.604 31.047 5.142 1 38.55 ? O32 IHP 203 B 1 HETATM 16 O O42 IHP . . . H 6 11.219 33.092 4.679 1 43.01 ? O42 IHP 203 B 1 HETATM 17 O O13 IHP . . . H 6 10.475 30.59 9.167 1 43.32 ? O13 IHP 203 B 1 HETATM 18 P P3 IHP . . . H 6 10.446 31.611 10.437 1 41.95 ? P3 IHP 203 B 1 HETATM 19 O O23 IHP . . . H 6 10.768 32.99 9.926 1 43.11 ? O23 IHP 203 B 1 HETATM 20 O O33 IHP . . . H 6 11.543 31.043 11.321 1 43.36 ? O33 IHP 203 B 1 HETATM 21 O O43 IHP . . . H 6 9.083 31.532 11.078 1 43.37 ? O43 IHP 203 B 1 HETATM 22 O O14 IHP . . . H 6 7.262 29.361 7.86 1 39.31 ? O14 IHP 203 B 1 HETATM 23 P P4 IHP . . . H 6 5.856 29.665 8.661 1 41.13 ? P4 IHP 203 B 1 HETATM 24 O O24 IHP . . . H 6 5.9 28.937 9.975 1 38.96 ? O24 IHP 203 B 1 HETATM 25 O O34 IHP . . . H 6 4.834 29.137 7.67 1 43.56 ? O34 IHP 203 B 1 HETATM 26 O O44 IHP . . . H 6 5.758 31.179 8.81 1 41.38 ? O44 IHP 203 B 1 HETATM 27 O O15 IHP . . . H 6 10.082 27.411 9.023 1 40.78 ? O15 IHP 203 B 1 HETATM 28 P P5 IHP . . . H 6 9.833 26.026 9.84 1 40.68 ? P5 IHP 203 B 1 HETATM 29 O O25 IHP . . . H 6 9.149 26.439 11.122 1 44.73 ? O25 IHP 203 B 1 HETATM 30 O O35 IHP . . . H 6 11.271 25.579 9.998 1 39.38 ? O35 IHP 203 B 1 HETATM 31 O O45 IHP . . . H 6 8.976 25.059 9.093 1 39.85 ? O45 IHP 203 B 1 HETATM 32 O O16 IHP . . . H 6 8.714 27.913 5.768 1 41.56 ? O16 IHP 203 B 1 HETATM 33 P P6 IHP . . . H 6 8.673 26.786 4.606 1 40.86 ? P6 IHP 203 B 1 HETATM 34 O O26 IHP . . . H 6 8.931 25.452 5.223 1 41.04 ? O26 IHP 203 B 1 HETATM 35 O O36 IHP . . . H 6 7.268 26.982 4.067 1 41.88 ? O36 IHP 203 B 1 HETATM 36 O O46 IHP . . . H 6 9.735 27.16 3.562 1 38.12 ? O46 IHP 203 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 36 #