data_1NJ9
#
_model_server_result.job_id            88E7-JmKgzFIcoRJ6wBIkQ 
_model_server_result.datetime_utc      '2024-10-12 11:15:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nj9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    1NJ9 
#
_exptl.entry_id    1NJ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NJ9 
_cell.length_a            37.5 
_cell.length_b            108.4 
_cell.length_c            111.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NJ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,M,N 1 1 
C,D,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 137 L CYS 135 1_555 A SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 142 H CYS 139 1_555 B SG CYS 197 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 C SG CYS 22 A CYS 23 1_555 C SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 137 A CYS 135 1_555 C SG CYS 196 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 142 B CYS 139 1_555 D SG CYS 197 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 H NA NA . H NA 1004 1_555 N O HOH . H HOH 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc2 A OD1 ASP 43 L ASP 41 1_555 F NA NA . L NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc3 B N TRP 156 H TRP 153 1_555 I NA NA . H NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
metalc ? metalc4 B O THR 206 H THR 203 1_555 G NA NA . H NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc5 B OXT ARG 215 H ARG 212 1_555 H NA NA . H NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc6 C N ALA 35 A ALA 33 1_555 J NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1NJ9 
_atom_sites.fract_transf_matrix[1][1]    0.026667 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009225 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NA L 1 1001 1001 NA NA . 
F 3 NA L 1 1003 1003 NA NA . 
G 3 NA H 1 1002 1002 NA NA . 
H 3 NA H 1 1004 1004 NA NA . 
I 3 NA H 1 1005 1005 NA NA . 
J 3 NA A 1 1000 1000 NA NA . 
K 3 NA B 1 1006 1006 NA NA . 
L 3 NA B 1 1007 1007 NA NA . 
M 4 HOH L 1 1004 6 HOH HOH . 
M 4 HOH L 2 1005 11 HOH HOH . 
M 4 HOH L 3 1006 15 HOH HOH . 
M 4 HOH L 4 1007 22 HOH HOH . 
M 4 HOH L 5 1008 28 HOH HOH . 
M 4 HOH L 6 1009 29 HOH HOH . 
M 4 HOH L 7 1010 32 HOH HOH . 
M 4 HOH L 8 1011 33 HOH HOH . 
M 4 HOH L 9 1012 42 HOH HOH . 
M 4 HOH L 10 1013 46 HOH HOH . 
M 4 HOH L 11 1014 47 HOH HOH . 
M 4 HOH L 12 1015 49 HOH HOH . 
M 4 HOH L 13 1016 59 HOH HOH . 
M 4 HOH L 14 1017 60 HOH HOH . 
M 4 HOH L 15 1018 63 HOH HOH . 
M 4 HOH L 16 1019 65 HOH HOH . 
M 4 HOH L 17 1020 69 HOH HOH . 
M 4 HOH L 18 1021 70 HOH HOH . 
M 4 HOH L 19 1022 77 HOH HOH . 
M 4 HOH L 20 1023 78 HOH HOH . 
M 4 HOH L 21 1024 79 HOH HOH . 
M 4 HOH L 22 1025 85 HOH HOH . 
M 4 HOH L 23 1026 86 HOH HOH . 
M 4 HOH L 24 1027 100 HOH HOH . 
M 4 HOH L 25 1028 107 HOH HOH . 
N 4 HOH H 1 1006 3 HOH HOH . 
N 4 HOH H 2 1007 5 HOH HOH . 
N 4 HOH H 3 1008 9 HOH HOH . 
N 4 HOH H 4 1009 19 HOH HOH . 
N 4 HOH H 5 1010 20 HOH HOH . 
N 4 HOH H 6 1011 25 HOH HOH . 
N 4 HOH H 7 1012 35 HOH HOH . 
N 4 HOH H 8 1013 38 HOH HOH . 
N 4 HOH H 9 1014 39 HOH HOH . 
N 4 HOH H 10 1015 41 HOH HOH . 
N 4 HOH H 11 1016 44 HOH HOH . 
N 4 HOH H 12 1017 50 HOH HOH . 
N 4 HOH H 13 1018 52 HOH HOH . 
N 4 HOH H 14 1019 53 HOH HOH . 
N 4 HOH H 15 1020 55 HOH HOH . 
N 4 HOH H 16 1021 58 HOH HOH . 
N 4 HOH H 17 1022 62 HOH HOH . 
N 4 HOH H 18 1023 67 HOH HOH . 
N 4 HOH H 19 1024 72 HOH HOH . 
N 4 HOH H 20 1025 74 HOH HOH . 
N 4 HOH H 21 1026 82 HOH HOH . 
N 4 HOH H 22 1027 84 HOH HOH . 
N 4 HOH H 23 1028 88 HOH HOH . 
N 4 HOH H 24 1029 90 HOH HOH . 
N 4 HOH H 25 1030 91 HOH HOH . 
N 4 HOH H 26 1031 97 HOH HOH . 
N 4 HOH H 27 1032 101 HOH HOH . 
N 4 HOH H 28 1033 104 HOH HOH . 
N 4 HOH H 29 1034 105 HOH HOH . 
O 4 HOH A 1 1001 1 HOH HOH . 
O 4 HOH A 2 1002 2 HOH HOH . 
O 4 HOH A 3 1003 10 HOH HOH . 
O 4 HOH A 4 1004 12 HOH HOH . 
O 4 HOH A 5 1005 13 HOH HOH . 
O 4 HOH A 6 1006 14 HOH HOH . 
O 4 HOH A 7 1007 17 HOH HOH . 
O 4 HOH A 8 1008 27 HOH HOH . 
O 4 HOH A 9 1009 30 HOH HOH . 
O 4 HOH A 10 1010 37 HOH HOH . 
O 4 HOH A 11 1011 40 HOH HOH . 
O 4 HOH A 12 1012 45 HOH HOH . 
O 4 HOH A 13 1013 54 HOH HOH . 
O 4 HOH A 14 1014 57 HOH HOH . 
O 4 HOH A 15 1015 61 HOH HOH . 
O 4 HOH A 16 1016 68 HOH HOH . 
O 4 HOH A 17 1017 75 HOH HOH . 
O 4 HOH A 18 1018 83 HOH HOH . 
O 4 HOH A 19 1019 94 HOH HOH . 
O 4 HOH A 20 1020 96 HOH HOH . 
O 4 HOH A 21 1021 98 HOH HOH . 
O 4 HOH A 22 1022 99 HOH HOH . 
O 4 HOH A 23 1023 103 HOH HOH . 
P 4 HOH B 1 1008 4 HOH HOH . 
P 4 HOH B 2 1009 7 HOH HOH . 
P 4 HOH B 3 1010 8 HOH HOH . 
P 4 HOH B 4 1011 16 HOH HOH . 
P 4 HOH B 5 1012 18 HOH HOH . 
P 4 HOH B 6 1013 21 HOH HOH . 
P 4 HOH B 7 1014 23 HOH HOH . 
P 4 HOH B 8 1015 24 HOH HOH . 
P 4 HOH B 9 1016 26 HOH HOH . 
P 4 HOH B 10 1017 31 HOH HOH . 
P 4 HOH B 11 1018 34 HOH HOH . 
P 4 HOH B 12 1019 36 HOH HOH . 
P 4 HOH B 13 1020 43 HOH HOH . 
P 4 HOH B 14 1021 48 HOH HOH . 
P 4 HOH B 15 1022 51 HOH HOH . 
P 4 HOH B 16 1023 56 HOH HOH . 
P 4 HOH B 17 1024 64 HOH HOH . 
P 4 HOH B 18 1025 66 HOH HOH . 
P 4 HOH B 19 1026 71 HOH HOH . 
P 4 HOH B 20 1027 73 HOH HOH . 
P 4 HOH B 21 1028 76 HOH HOH . 
P 4 HOH B 22 1029 80 HOH HOH . 
P 4 HOH B 23 1030 81 HOH HOH . 
P 4 HOH B 24 1031 87 HOH HOH . 
P 4 HOH B 25 1032 89 HOH HOH . 
P 4 HOH B 26 1033 92 HOH HOH . 
P 4 HOH B 27 1034 93 HOH HOH . 
P 4 HOH B 28 1035 95 HOH HOH . 
P 4 HOH B 29 1036 102 HOH HOH . 
P 4 HOH B 30 1037 106 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               26.935 
_atom_site.Cartn_y               -3.372 
_atom_site.Cartn_z               -36.019 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.52 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#