data_1NJU # _model_server_result.job_id TK0Fiex-8VlFKsecaYpQpw _model_server_result.datetime_utc '2024-11-27 00:59:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1260}' # _entry.id 1NJU # _exptl.entry_id 1NJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Residue peptide of the Peptidomimetic Inhibitor was chemically synthesized.' _entity.formula_weight 717.939 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NJU _cell.length_a 105.46 _cell.length_b 213.53 _cell.length_c 52.33 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 132 A SER 132 1_555 E C4 0FP . A 0FP 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B OG SER 132 B SER 432 1_555 F C4 0FP . B 0FP 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C OG SER 132 C SER 1132 1_555 G C4 0FP . C 0FP 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 D OG SER 132 D SER 1432 1_555 H C4 0FP . D 0FP 1560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C37 H63 N7 O7' _chem_comp.formula_weight 717.939 _chem_comp.id 0FP _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'BILC 408' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 0FP sing 1 n n CA CB 0FP sing 2 n n CA HA2 0FP sing 3 n n CA HA 0FP sing 4 n n C O 0FP doub 5 n n C N 0FP sing 6 n n CB CG 0FP sing 7 n n CB HB1 0FP sing 8 n n CB HB2 0FP sing 9 n n CG CD 0FP sing 10 n n CG HG1 0FP sing 11 n n CG HG2 0FP sing 12 n n CD CE 0FP sing 13 n n CD HD1 0FP sing 14 n n CD HD2 0FP sing 15 n n CE NZ 0FP sing 16 n n CE HE1 0FP sing 17 n n CE HE2 0FP sing 18 n n NZ HZ1 0FP sing 19 n n NZ HZ2 0FP sing 20 n n N CA1 0FP sing 21 n n N H 0FP sing 22 n n CA1 CB1 0FP sing 23 n n CA1 C1 0FP sing 24 n n CA1 HA1 0FP sing 25 n n CB1 CG1 0FP sing 26 n n CB1 CG2 0FP sing 27 n n CB1 CG3 0FP sing 28 n n CG1 HG11 0FP sing 29 n n CG1 HG12 0FP sing 30 n n CG1 HG13 0FP sing 31 n n CG2 HG21 0FP sing 32 n n CG2 HG22 0FP sing 33 n n CG2 HG23 0FP sing 34 n n CG3 HG31 0FP sing 35 n n CG3 HG32 0FP sing 36 n n CG3 HG33 0FP sing 37 n n C1 O1 0FP doub 38 n n C1 N1 0FP sing 39 n n N1 CA2 0FP sing 40 n n N1 H1 0FP sing 41 n n CA2 CB2 0FP sing 42 n n CA2 C2 0FP sing 43 n n CA2 HA3 0FP sing 44 n n CB2 CG11 0FP sing 45 n n CB2 CG21 0FP sing 46 n n CB2 CG31 0FP sing 47 n n CG11 HG14 0FP sing 48 n n CG11 HG15 0FP sing 49 n n CG11 HG16 0FP sing 50 n n CG21 HG24 0FP sing 51 n n CG21 HG25 0FP sing 52 n n CG21 HG26 0FP sing 53 n n CG31 HG34 0FP sing 54 n n CG31 HG35 0FP sing 55 n n CG31 HG36 0FP sing 56 n n C2 O2 0FP doub 57 n n C2 N2 0FP sing 58 n n N2 CA3 0FP sing 59 n n N2 H2 0FP sing 60 n n CA3 CB3 0FP sing 61 n n CA3 C3 0FP sing 62 n n CA3 HA11 0FP sing 63 n n CB3 CG4 0FP sing 64 n n CB3 HB21 0FP sing 65 n n CB3 HB3 0FP sing 66 n n CG4 OD1 0FP doub 67 n n CG4 ND2 0FP sing 68 n n ND2 CE1 0FP sing 69 n n ND2 CE2 0FP sing 70 n n CE1 HE11 0FP sing 71 n n CE1 HE12 0FP sing 72 n n CE1 HE13 0FP sing 73 n n CE2 HE21 0FP sing 74 n n CE2 HE22 0FP sing 75 n n CE2 HE23 0FP sing 76 n n C3 O3 0FP doub 77 n n C3 N3 0FP sing 78 n n N3 CA4 0FP sing 79 n n N3 H3 0FP sing 80 n n CA4 C4 0FP sing 81 n n CA4 CB4 0FP sing 82 n n CA4 HA4 0FP sing 83 n n C4 O4 0FP sing 84 n n C4 C11 0FP sing 85 n n CB4 HB11 0FP sing 86 n n CB4 HB22 0FP sing 87 n n CB4 HB31 0FP sing 88 n n C11 O11 0FP doub 89 n n C11 N21 0FP sing 90 n n N21 C31 0FP sing 91 n n N21 HN2 0FP sing 92 n n C31 C311 0FP sing 93 n n C31 C41 0FP sing 94 n n C31 HC3 0FP sing 95 n n C311 C32 0FP sing 96 n n C311 H311 0FP sing 97 n n C311 H312 0FP sing 98 n n C32 H321 0FP sing 99 n n C32 H322 0FP sing 100 n n C32 H323 0FP sing 101 n n C41 C5 0FP doub 102 n y C41 C9 0FP sing 103 n y C5 C6 0FP sing 104 n y C5 HC5 0FP sing 105 n n C6 C7 0FP doub 106 n y C6 HC6 0FP sing 107 n n C7 C8 0FP sing 108 n y C7 HC7 0FP sing 109 n n C8 C9 0FP doub 110 n y C8 HC8 0FP sing 111 n n C9 HC9 0FP sing 112 n n C4 H62 0FP sing 113 n n O4 H63 0FP sing 114 n n # _atom_sites.entry_id 1NJU _atom_sites.fract_transf_matrix[1][1] 0.009482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 0FP A 1 260 260 0FP DAL . F 2 0FP B 1 560 560 0FP DAL . G 2 0FP C 1 1260 1260 0FP DAL . H 2 0FP D 1 1560 1560 0FP DAL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 0FP . . . G 2 40.037 20.681 -22.671 1 46.16 ? CA 0FP 1260 C 1 HETATM 2 C C 0FP . . . G 2 39.73 19.302 -22.084 1 45.23 ? C 0FP 1260 C 1 HETATM 3 O O 0FP . . . G 2 40.084 18.271 -22.67 1 44.92 ? O 0FP 1260 C 1 HETATM 4 C CB 0FP . . . G 2 38.729 21.453 -22.877 1 49.11 ? CB 0FP 1260 C 1 HETATM 5 C CG 0FP . . . G 2 38.871 22.827 -23.531 1 53.09 ? CG 0FP 1260 C 1 HETATM 6 C CD 0FP . . . G 2 39.623 23.813 -22.628 1 55.24 ? CD 0FP 1260 C 1 HETATM 7 C CE 0FP . . . G 2 39.595 25.224 -23.207 1 55.06 ? CE 0FP 1260 C 1 HETATM 8 N NZ 0FP . . . G 2 40.136 25.236 -24.591 1 55.93 ? NZ 0FP 1260 C 1 HETATM 9 N N 0FP . . . G 2 39.06 19.286 -20.932 1 43.16 ? N 0FP 1260 C 1 HETATM 10 C CA1 0FP . . . G 2 38.712 18.027 -20.274 1 40.83 ? CA1 0FP 1260 C 1 HETATM 11 C CB1 0FP . . . G 2 39.432 17.901 -18.91 1 39.7 ? CB1 0FP 1260 C 1 HETATM 12 C CG1 0FP . . . G 2 38.86 18.899 -17.92 1 39.28 ? CG1 0FP 1260 C 1 HETATM 13 C CG2 0FP . . . G 2 39.262 16.492 -18.377 1 38.74 ? CG2 0FP 1260 C 1 HETATM 14 C CG3 0FP . . . G 2 40.897 18.2 -19.083 1 40 ? CG3 0FP 1260 C 1 HETATM 15 C C1 0FP . . . G 2 37.203 17.889 -20.06 1 40.1 ? C1 0FP 1260 C 1 HETATM 16 O O1 0FP . . . G 2 36.508 18.878 -19.778 1 39.24 ? O1 0FP 1260 C 1 HETATM 17 N N1 0FP . . . G 2 36.703 16.66 -20.204 1 38.66 ? N1 0FP 1260 C 1 HETATM 18 C CA2 0FP . . . G 2 35.278 16.377 -20.018 1 37.56 ? CA2 0FP 1260 C 1 HETATM 19 C CB2 0FP . . . G 2 34.631 15.834 -21.315 1 37.32 ? CB2 0FP 1260 C 1 HETATM 20 C CG11 0FP . . . G 2 35.19 14.468 -21.633 1 37.52 ? CG11 0FP 1260 C 1 HETATM 21 C CG21 0FP . . . G 2 33.132 15.729 -21.139 1 38.58 ? CG21 0FP 1260 C 1 HETATM 22 C CG31 0FP . . . G 2 34.93 16.767 -22.463 1 38.17 ? CG31 0FP 1260 C 1 HETATM 23 C C2 0FP . . . G 2 35.078 15.349 -18.904 1 36.2 ? C2 0FP 1260 C 1 HETATM 24 O O2 0FP . . . G 2 35.626 14.244 -18.949 1 35.67 ? O2 0FP 1260 C 1 HETATM 25 N N2 0FP . . . G 2 34.283 15.717 -17.908 1 35.19 ? N2 0FP 1260 C 1 HETATM 26 C CA3 0FP . . . G 2 34.017 14.833 -16.782 1 33.75 ? CA3 0FP 1260 C 1 HETATM 27 C CB3 0FP . . . G 2 34.311 15.563 -15.467 1 33.45 ? CB3 0FP 1260 C 1 HETATM 28 C CG4 0FP . . . G 2 35.779 15.955 -15.333 1 33.18 ? CG4 0FP 1260 C 1 HETATM 29 O OD1 0FP . . . G 2 36.621 15.478 -16.099 1 32.86 ? OD1 0FP 1260 C 1 HETATM 30 N ND2 0FP . . . G 2 36.095 16.829 -14.363 1 33.96 ? ND2 0FP 1260 C 1 HETATM 31 C CE1 0FP . . . G 2 35.172 17.513 -13.462 1 32.22 ? CE1 0FP 1260 C 1 HETATM 32 C CE2 0FP . . . G 2 37.488 17.136 -14.107 1 33.31 ? CE2 0FP 1260 C 1 HETATM 33 C C3 0FP . . . G 2 32.586 14.304 -16.766 1 33.37 ? C3 0FP 1260 C 1 HETATM 34 O O3 0FP . . . G 2 31.628 15.052 -16.958 1 32.79 ? O3 0FP 1260 C 1 HETATM 35 N N3 0FP . . . G 2 32.451 13.003 -16.539 1 33.01 ? N3 0FP 1260 C 1 HETATM 36 C CA4 0FP . . . G 2 31.146 12.363 -16.479 1 32.82 ? CA4 0FP 1260 C 1 HETATM 37 C C4 0FP . . . G 2 30.944 11.7 -15.104 1 33.92 ? C4 0FP 1260 C 1 HETATM 38 O O4 0FP . . . G 2 29.967 10.713 -15.213 1 33.08 ? O4 0FP 1260 C 1 HETATM 39 C CB4 0FP . . . G 2 31.047 11.316 -17.565 1 33.45 ? CB4 0FP 1260 C 1 HETATM 40 C C11 0FP . . . G 2 30.547 12.758 -14.046 1 35.44 ? C11 0FP 1260 C 1 HETATM 41 O O11 0FP . . . G 2 31.303 13.697 -13.788 1 38.08 ? O11 0FP 1260 C 1 HETATM 42 N N21 0FP . . . G 2 29.374 12.613 -13.428 1 35.3 ? N21 0FP 1260 C 1 HETATM 43 C C31 0FP . . . G 2 28.898 13.526 -12.383 1 36.11 ? C31 0FP 1260 C 1 HETATM 44 C C311 0FP . . . G 2 29.013 12.882 -10.993 1 36.59 ? C311 0FP 1260 C 1 HETATM 45 C C32 0FP . . . G 2 28.658 13.882 -9.888 1 34.86 ? C32 0FP 1260 C 1 HETATM 46 C C41 0FP . . . G 2 27.468 13.913 -12.618 1 36.89 ? C41 0FP 1260 C 1 HETATM 47 C C5 0FP . . . G 2 27.116 15.251 -12.759 1 37.91 ? C5 0FP 1260 C 1 HETATM 48 C C6 0FP . . . G 2 25.788 15.626 -12.96 1 38.69 ? C6 0FP 1260 C 1 HETATM 49 C C7 0FP . . . G 2 24.797 14.648 -13.021 1 39.83 ? C7 0FP 1260 C 1 HETATM 50 C C8 0FP . . . G 2 25.139 13.3 -12.88 1 38.14 ? C8 0FP 1260 C 1 HETATM 51 C C9 0FP . . . G 2 26.471 12.946 -12.68 1 37.08 ? C9 0FP 1260 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #