data_1NJU
#
_model_server_result.job_id            lzU3ftKlZkpq_YatcSg94A 
_model_server_result.datetime_utc      '2025-02-17 06:06:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nju 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1560}' 
#
_entry.id    1NJU 
#
_exptl.entry_id    1NJU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'Residue peptide of the Peptidomimetic Inhibitor was chemically synthesized.' 
_entity.formula_weight              717.939 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NJU 
_cell.length_a            105.46 
_cell.length_b            213.53 
_cell.length_c            52.33 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NJU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 132 A SER 132 1_555 E C4 0FP . A 0FP 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 B OG SER 132 B SER 432 1_555 F C4 0FP . B 0FP 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale3 C OG SER 132 C SER 1132 1_555 G C4 0FP . C 0FP 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 D OG SER 132 D SER 1432 1_555 H C4 0FP . D 0FP 1560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
#
_chem_comp.formula           'C37 H63 N7 O7' 
_chem_comp.formula_weight    717.939 
_chem_comp.id                0FP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     'BILC 408' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C 0FP sing 1 n n 
CA CB 0FP sing 2 n n 
CA HA2 0FP sing 3 n n 
CA HA 0FP sing 4 n n 
C O 0FP doub 5 n n 
C N 0FP sing 6 n n 
CB CG 0FP sing 7 n n 
CB HB1 0FP sing 8 n n 
CB HB2 0FP sing 9 n n 
CG CD 0FP sing 10 n n 
CG HG1 0FP sing 11 n n 
CG HG2 0FP sing 12 n n 
CD CE 0FP sing 13 n n 
CD HD1 0FP sing 14 n n 
CD HD2 0FP sing 15 n n 
CE NZ 0FP sing 16 n n 
CE HE1 0FP sing 17 n n 
CE HE2 0FP sing 18 n n 
NZ HZ1 0FP sing 19 n n 
NZ HZ2 0FP sing 20 n n 
N CA1 0FP sing 21 n n 
N H 0FP sing 22 n n 
CA1 CB1 0FP sing 23 n n 
CA1 C1 0FP sing 24 n n 
CA1 HA1 0FP sing 25 n n 
CB1 CG1 0FP sing 26 n n 
CB1 CG2 0FP sing 27 n n 
CB1 CG3 0FP sing 28 n n 
CG1 HG11 0FP sing 29 n n 
CG1 HG12 0FP sing 30 n n 
CG1 HG13 0FP sing 31 n n 
CG2 HG21 0FP sing 32 n n 
CG2 HG22 0FP sing 33 n n 
CG2 HG23 0FP sing 34 n n 
CG3 HG31 0FP sing 35 n n 
CG3 HG32 0FP sing 36 n n 
CG3 HG33 0FP sing 37 n n 
C1 O1 0FP doub 38 n n 
C1 N1 0FP sing 39 n n 
N1 CA2 0FP sing 40 n n 
N1 H1 0FP sing 41 n n 
CA2 CB2 0FP sing 42 n n 
CA2 C2 0FP sing 43 n n 
CA2 HA3 0FP sing 44 n n 
CB2 CG11 0FP sing 45 n n 
CB2 CG21 0FP sing 46 n n 
CB2 CG31 0FP sing 47 n n 
CG11 HG14 0FP sing 48 n n 
CG11 HG15 0FP sing 49 n n 
CG11 HG16 0FP sing 50 n n 
CG21 HG24 0FP sing 51 n n 
CG21 HG25 0FP sing 52 n n 
CG21 HG26 0FP sing 53 n n 
CG31 HG34 0FP sing 54 n n 
CG31 HG35 0FP sing 55 n n 
CG31 HG36 0FP sing 56 n n 
C2 O2 0FP doub 57 n n 
C2 N2 0FP sing 58 n n 
N2 CA3 0FP sing 59 n n 
N2 H2 0FP sing 60 n n 
CA3 CB3 0FP sing 61 n n 
CA3 C3 0FP sing 62 n n 
CA3 HA11 0FP sing 63 n n 
CB3 CG4 0FP sing 64 n n 
CB3 HB21 0FP sing 65 n n 
CB3 HB3 0FP sing 66 n n 
CG4 OD1 0FP doub 67 n n 
CG4 ND2 0FP sing 68 n n 
ND2 CE1 0FP sing 69 n n 
ND2 CE2 0FP sing 70 n n 
CE1 HE11 0FP sing 71 n n 
CE1 HE12 0FP sing 72 n n 
CE1 HE13 0FP sing 73 n n 
CE2 HE21 0FP sing 74 n n 
CE2 HE22 0FP sing 75 n n 
CE2 HE23 0FP sing 76 n n 
C3 O3 0FP doub 77 n n 
C3 N3 0FP sing 78 n n 
N3 CA4 0FP sing 79 n n 
N3 H3 0FP sing 80 n n 
CA4 C4 0FP sing 81 n n 
CA4 CB4 0FP sing 82 n n 
CA4 HA4 0FP sing 83 n n 
C4 O4 0FP sing 84 n n 
C4 C11 0FP sing 85 n n 
CB4 HB11 0FP sing 86 n n 
CB4 HB22 0FP sing 87 n n 
CB4 HB31 0FP sing 88 n n 
C11 O11 0FP doub 89 n n 
C11 N21 0FP sing 90 n n 
N21 C31 0FP sing 91 n n 
N21 HN2 0FP sing 92 n n 
C31 C311 0FP sing 93 n n 
C31 C41 0FP sing 94 n n 
C31 HC3 0FP sing 95 n n 
C311 C32 0FP sing 96 n n 
C311 H311 0FP sing 97 n n 
C311 H312 0FP sing 98 n n 
C32 H321 0FP sing 99 n n 
C32 H322 0FP sing 100 n n 
C32 H323 0FP sing 101 n n 
C41 C5 0FP doub 102 n y 
C41 C9 0FP sing 103 n y 
C5 C6 0FP sing 104 n y 
C5 HC5 0FP sing 105 n n 
C6 C7 0FP doub 106 n y 
C6 HC6 0FP sing 107 n n 
C7 C8 0FP sing 108 n y 
C7 HC7 0FP sing 109 n n 
C8 C9 0FP doub 110 n y 
C8 HC8 0FP sing 111 n n 
C9 HC9 0FP sing 112 n n 
C4 H62 0FP sing 113 n n 
O4 H63 0FP sing 114 n n 
#
_atom_sites.entry_id                     1NJU 
_atom_sites.fract_transf_matrix[1][1]    0.009482 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 0FP A 1 260 260 0FP DAL . 
F 2 0FP B 1 560 560 0FP DAL . 
G 2 0FP C 1 1260 1260 0FP DAL . 
H 2 0FP D 1 1560 1560 0FP DAL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA 0FP . . . H 2 2.627 2.404 18.772 1 45.71 ? CA 0FP 1560 D 1 
HETATM 2 C C 0FP . . . H 2 2.939 3.821 18.282 1 43.63 ? C 0FP 1560 D 1 
HETATM 3 O O 0FP . . . H 2 2.18 4.759 18.543 1 42.8 ? O 0FP 1560 D 1 
HETATM 4 C CB 0FP . . . H 2 2.609 1.431 17.581 1 48.95 ? CB 0FP 1560 D 1 
HETATM 5 C CG 0FP . . . H 2 1.876 0.079 17.803 1 52.21 ? CG 0FP 1560 D 1 
HETATM 6 C CD 0FP . . . H 2 2.517 -0.782 18.905 1 53.92 ? CD 0FP 1560 D 1 
HETATM 7 C CE 0FP . . . H 2 2.013 -2.22 18.866 1 53.24 ? CE 0FP 1560 D 1 
HETATM 8 N NZ 0FP . . . H 2 0.527 -2.285 18.924 1 54.11 ? NZ 0FP 1560 D 1 
HETATM 9 N N 0FP . . . H 2 4.054 3.974 17.571 1 41.25 ? N 0FP 1560 D 1 
HETATM 10 C CA1 0FP . . . H 2 4.457 5.278 17.05 1 39 ? CA1 0FP 1560 D 1 
HETATM 11 C CB1 0FP . . . H 2 5.772 5.774 17.734 1 38.08 ? CB1 0FP 1560 D 1 
HETATM 12 C CG1 0FP . . . H 2 6.707 4.598 17.975 1 36.11 ? CG1 0FP 1560 D 1 
HETATM 13 C CG2 0FP . . . H 2 6.464 6.799 16.845 1 37.15 ? CG2 0FP 1560 D 1 
HETATM 14 C CG3 0FP . . . H 2 5.455 6.431 19.072 1 36.94 ? CG3 0FP 1560 D 1 
HETATM 15 C C1 0FP . . . H 2 4.644 5.264 15.528 1 38.5 ? C1 0FP 1560 D 1 
HETATM 16 O O1 0FP . . . H 2 5.135 4.29 14.954 1 38.18 ? O1 0FP 1560 D 1 
HETATM 17 N N1 0FP . . . H 2 4.241 6.352 14.878 1 37.57 ? N1 0FP 1560 D 1 
HETATM 18 C CA2 0FP . . . H 2 4.377 6.472 13.429 1 35.95 ? CA2 0FP 1560 D 1 
HETATM 19 C CB2 0FP . . . H 2 2.987 6.625 12.746 1 35.71 ? CB2 0FP 1560 D 1 
HETATM 20 C CG11 0FP . . . H 2 2.215 7.791 13.371 1 33.59 ? CG11 0FP 1560 D 1 
HETATM 21 C CG21 0FP . . . H 2 3.166 6.869 11.257 1 34.8 ? CG21 0FP 1560 D 1 
HETATM 22 C CG31 0FP . . . H 2 2.195 5.342 12.932 1 35.95 ? CG31 0FP 1560 D 1 
HETATM 23 C C2 0FP . . . H 2 5.264 7.663 13.066 1 35.05 ? C2 0FP 1560 D 1 
HETATM 24 O O2 0FP . . . H 2 5.008 8.797 13.476 1 36.04 ? O2 0FP 1560 D 1 
HETATM 25 N N2 0FP . . . H 2 6.314 7.398 12.299 1 34.2 ? N2 0FP 1560 D 1 
HETATM 26 C CA3 0FP . . . H 2 7.235 8.453 11.889 1 33.82 ? CA3 0FP 1560 D 1 
HETATM 27 C CB3 0FP . . . H 2 8.68 8.063 12.192 1 33.33 ? CB3 0FP 1560 D 1 
HETATM 28 C CG4 0FP . . . H 2 8.95 7.921 13.669 1 33.02 ? CG4 0FP 1560 D 1 
HETATM 29 O OD1 0FP . . . H 2 8.333 8.607 14.491 1 32.37 ? OD1 0FP 1560 D 1 
HETATM 30 N ND2 0FP . . . H 2 9.899 7.045 14.022 1 32.49 ? ND2 0FP 1560 D 1 
HETATM 31 C CE1 0FP . . . H 2 10.659 6.262 13.056 1 30.17 ? CE1 0FP 1560 D 1 
HETATM 32 C CE2 0FP . . . H 2 10.197 6.851 15.42 1 33.03 ? CE2 0FP 1560 D 1 
HETATM 33 C C3 0FP . . . H 2 7.132 8.78 10.407 1 33.68 ? C3 0FP 1560 D 1 
HETATM 34 O O3 0FP . . . H 2 7.092 7.881 9.56 1 32.84 ? O3 0FP 1560 D 1 
HETATM 35 N N3 0FP . . . H 2 7.095 10.075 10.104 1 32.87 ? N3 0FP 1560 D 1 
HETATM 36 C CA4 0FP . . . H 2 7.017 10.53 8.723 1 32.84 ? CA4 0FP 1560 D 1 
HETATM 37 C C4 0FP . . . H 2 8.26 11.36 8.364 1 32.8 ? C4 0FP 1560 D 1 
HETATM 38 O O4 0FP . . . H 2 7.955 12.216 7.31 1 32.66 ? O4 0FP 1560 D 1 
HETATM 39 C CB4 0FP . . . H 2 5.75 11.351 8.516 1 32.4 ? CB4 0FP 1560 D 1 
HETATM 40 C C11 0FP . . . H 2 9.428 10.38 8.023 1 34.37 ? C11 0FP 1560 D 1 
HETATM 41 O O11 0FP . . . H 2 9.705 9.445 8.785 1 34.86 ? O11 0FP 1560 D 1 
HETATM 42 N N21 0FP . . . H 2 10.099 10.582 6.889 1 34.84 ? N21 0FP 1560 D 1 
HETATM 43 C C31 0FP . . . H 2 11.215 9.744 6.438 1 34.43 ? C31 0FP 1560 D 1 
HETATM 44 C C311 0FP . . . H 2 12.46 10.573 6.167 1 34.56 ? C311 0FP 1560 D 1 
HETATM 45 C C32 0FP . . . H 2 13.507 9.764 5.417 1 31.28 ? C32 0FP 1560 D 1 
HETATM 46 C C41 0FP . . . H 2 10.852 9.006 5.17 1 35.67 ? C41 0FP 1560 D 1 
HETATM 47 C C5 0FP . . . H 2 10.838 7.61 5.14 1 34.2 ? C5 0FP 1560 D 1 
HETATM 48 C C6 0FP . . . H 2 10.54 6.924 3.963 1 33.03 ? C6 0FP 1560 D 1 
HETATM 49 C C7 0FP . . . H 2 10.25 7.631 2.798 1 32.71 ? C7 0FP 1560 D 1 
HETATM 50 C C8 0FP . . . H 2 10.259 9.017 2.81 1 34.7 ? C8 0FP 1560 D 1 
HETATM 51 C C9 0FP . . . H 2 10.559 9.703 3.996 1 35.71 ? C9 0FP 1560 D 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           499 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           51 
#