data_1NJU # _model_server_result.job_id 8faTWPIjcBKWZcR69C15vg _model_server_result.datetime_utc '2024-10-19 03:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":560}' # _entry.id 1NJU # _exptl.entry_id 1NJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Residue peptide of the Peptidomimetic Inhibitor was chemically synthesized.' _entity.formula_weight 717.939 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NJU _cell.length_a 105.46 _cell.length_b 213.53 _cell.length_c 52.33 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 132 A SER 132 1_555 E C4 0FP . A 0FP 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B OG SER 132 B SER 432 1_555 F C4 0FP . B 0FP 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C OG SER 132 C SER 1132 1_555 G C4 0FP . C 0FP 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 D OG SER 132 D SER 1432 1_555 H C4 0FP . D 0FP 1560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C37 H63 N7 O7' _chem_comp.formula_weight 717.939 _chem_comp.id 0FP _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'BILC 408' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 0FP sing 1 n n CA CB 0FP sing 2 n n CA HA2 0FP sing 3 n n CA HA 0FP sing 4 n n C O 0FP doub 5 n n C N 0FP sing 6 n n CB CG 0FP sing 7 n n CB HB1 0FP sing 8 n n CB HB2 0FP sing 9 n n CG CD 0FP sing 10 n n CG HG1 0FP sing 11 n n CG HG2 0FP sing 12 n n CD CE 0FP sing 13 n n CD HD1 0FP sing 14 n n CD HD2 0FP sing 15 n n CE NZ 0FP sing 16 n n CE HE1 0FP sing 17 n n CE HE2 0FP sing 18 n n NZ HZ1 0FP sing 19 n n NZ HZ2 0FP sing 20 n n N CA1 0FP sing 21 n n N H 0FP sing 22 n n CA1 CB1 0FP sing 23 n n CA1 C1 0FP sing 24 n n CA1 HA1 0FP sing 25 n n CB1 CG1 0FP sing 26 n n CB1 CG2 0FP sing 27 n n CB1 CG3 0FP sing 28 n n CG1 HG11 0FP sing 29 n n CG1 HG12 0FP sing 30 n n CG1 HG13 0FP sing 31 n n CG2 HG21 0FP sing 32 n n CG2 HG22 0FP sing 33 n n CG2 HG23 0FP sing 34 n n CG3 HG31 0FP sing 35 n n CG3 HG32 0FP sing 36 n n CG3 HG33 0FP sing 37 n n C1 O1 0FP doub 38 n n C1 N1 0FP sing 39 n n N1 CA2 0FP sing 40 n n N1 H1 0FP sing 41 n n CA2 CB2 0FP sing 42 n n CA2 C2 0FP sing 43 n n CA2 HA3 0FP sing 44 n n CB2 CG11 0FP sing 45 n n CB2 CG21 0FP sing 46 n n CB2 CG31 0FP sing 47 n n CG11 HG14 0FP sing 48 n n CG11 HG15 0FP sing 49 n n CG11 HG16 0FP sing 50 n n CG21 HG24 0FP sing 51 n n CG21 HG25 0FP sing 52 n n CG21 HG26 0FP sing 53 n n CG31 HG34 0FP sing 54 n n CG31 HG35 0FP sing 55 n n CG31 HG36 0FP sing 56 n n C2 O2 0FP doub 57 n n C2 N2 0FP sing 58 n n N2 CA3 0FP sing 59 n n N2 H2 0FP sing 60 n n CA3 CB3 0FP sing 61 n n CA3 C3 0FP sing 62 n n CA3 HA11 0FP sing 63 n n CB3 CG4 0FP sing 64 n n CB3 HB21 0FP sing 65 n n CB3 HB3 0FP sing 66 n n CG4 OD1 0FP doub 67 n n CG4 ND2 0FP sing 68 n n ND2 CE1 0FP sing 69 n n ND2 CE2 0FP sing 70 n n CE1 HE11 0FP sing 71 n n CE1 HE12 0FP sing 72 n n CE1 HE13 0FP sing 73 n n CE2 HE21 0FP sing 74 n n CE2 HE22 0FP sing 75 n n CE2 HE23 0FP sing 76 n n C3 O3 0FP doub 77 n n C3 N3 0FP sing 78 n n N3 CA4 0FP sing 79 n n N3 H3 0FP sing 80 n n CA4 C4 0FP sing 81 n n CA4 CB4 0FP sing 82 n n CA4 HA4 0FP sing 83 n n C4 O4 0FP sing 84 n n C4 C11 0FP sing 85 n n CB4 HB11 0FP sing 86 n n CB4 HB22 0FP sing 87 n n CB4 HB31 0FP sing 88 n n C11 O11 0FP doub 89 n n C11 N21 0FP sing 90 n n N21 C31 0FP sing 91 n n N21 HN2 0FP sing 92 n n C31 C311 0FP sing 93 n n C31 C41 0FP sing 94 n n C31 HC3 0FP sing 95 n n C311 C32 0FP sing 96 n n C311 H311 0FP sing 97 n n C311 H312 0FP sing 98 n n C32 H321 0FP sing 99 n n C32 H322 0FP sing 100 n n C32 H323 0FP sing 101 n n C41 C5 0FP doub 102 n y C41 C9 0FP sing 103 n y C5 C6 0FP sing 104 n y C5 HC5 0FP sing 105 n n C6 C7 0FP doub 106 n y C6 HC6 0FP sing 107 n n C7 C8 0FP sing 108 n y C7 HC7 0FP sing 109 n n C8 C9 0FP doub 110 n y C8 HC8 0FP sing 111 n n C9 HC9 0FP sing 112 n n C4 H62 0FP sing 113 n n O4 H63 0FP sing 114 n n # _atom_sites.entry_id 1NJU _atom_sites.fract_transf_matrix[1][1] 0.009482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 0FP A 1 260 260 0FP DAL . F 2 0FP B 1 560 560 0FP DAL . G 2 0FP C 1 1260 1260 0FP DAL . H 2 0FP D 1 1560 1560 0FP DAL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 0FP . . . F 2 39.247 56.95 22.82 1 41.95 ? CA 0FP 560 B 1 HETATM 2 C C 0FP . . . F 2 38.896 58.341 22.288 1 40.9 ? C 0FP 560 B 1 HETATM 3 O O 0FP . . . F 2 39.194 59.356 22.926 1 40.2 ? O 0FP 560 B 1 HETATM 4 C CB 0FP . . . F 2 37.981 56.085 22.976 1 44.56 ? CB 0FP 560 B 1 HETATM 5 C CG 0FP . . . F 2 37.564 55.244 21.757 1 44 ? CG 0FP 560 B 1 HETATM 6 C CD 0FP . . . F 2 36.972 56.088 20.633 1 44.37 ? CD 0FP 560 B 1 HETATM 7 C CE 0FP . . . F 2 36.647 55.238 19.41 1 44.67 ? CE 0FP 560 B 1 HETATM 8 N NZ 0FP . . . F 2 37.837 54.499 18.889 1 44.91 ? NZ 0FP 560 B 1 HETATM 9 N N 0FP . . . F 2 38.266 58.385 21.118 1 39.09 ? N 0FP 560 B 1 HETATM 10 C CA1 0FP . . . F 2 37.886 59.648 20.5 1 37.44 ? CA1 0FP 560 B 1 HETATM 11 C CB1 0FP . . . F 2 38.658 59.857 19.186 1 36.69 ? CB1 0FP 560 B 1 HETATM 12 C CG1 0FP . . . F 2 38.665 58.563 18.411 1 35.52 ? CG1 0FP 560 B 1 HETATM 13 C CG2 0FP . . . F 2 37.999 60.956 18.363 1 35.07 ? CG2 0FP 560 B 1 HETATM 14 C CG3 0FP . . . F 2 40.085 60.263 19.491 1 35.83 ? CG3 0FP 560 B 1 HETATM 15 C C1 0FP . . . F 2 36.387 59.728 20.221 1 37.41 ? C1 0FP 560 B 1 HETATM 16 O O1 0FP . . . F 2 35.76 58.734 19.839 1 37.25 ? O1 0FP 560 B 1 HETATM 17 N N1 0FP . . . F 2 35.819 60.914 20.424 1 35.94 ? N1 0FP 560 B 1 HETATM 18 C CA2 0FP . . . F 2 34.394 61.139 20.185 1 34.24 ? CA2 0FP 560 B 1 HETATM 19 C CB2 0FP . . . F 2 33.665 61.585 21.476 1 33.5 ? CB2 0FP 560 B 1 HETATM 20 C CG11 0FP . . . F 2 34.396 62.753 22.113 1 31.6 ? CG11 0FP 560 B 1 HETATM 21 C CG21 0FP . . . F 2 32.243 62.006 21.139 1 32.5 ? CG21 0FP 560 B 1 HETATM 22 C CG31 0FP . . . F 2 33.623 60.43 22.452 1 33.58 ? CG31 0FP 560 B 1 HETATM 23 C C2 0FP . . . F 2 34.181 62.194 19.107 1 32.78 ? C2 0FP 560 B 1 HETATM 24 O O2 0FP . . . F 2 34.679 63.313 19.218 1 33.11 ? O2 0FP 560 B 1 HETATM 25 N N2 0FP . . . F 2 33.439 61.831 18.068 1 31.32 ? N2 0FP 560 B 1 HETATM 26 C CA3 0FP . . . F 2 33.174 62.743 16.967 1 31.78 ? CA3 0FP 560 B 1 HETATM 27 C CB3 0FP . . . F 2 33.495 62.074 15.624 1 31.88 ? CB3 0FP 560 B 1 HETATM 28 C CG4 0FP . . . F 2 34.951 61.689 15.49 1 32.81 ? CG4 0FP 560 B 1 HETATM 29 O OD1 0FP . . . F 2 35.819 62.328 16.078 1 36.35 ? OD1 0FP 560 B 1 HETATM 30 N ND2 0FP . . . F 2 35.239 60.662 14.68 1 33.48 ? ND2 0FP 560 B 1 HETATM 31 C CE1 0FP . . . F 2 34.27 59.936 13.897 1 32.12 ? CE1 0FP 560 B 1 HETATM 32 C CE2 0FP . . . F 2 36.615 60.221 14.575 1 29.9 ? CE2 0FP 560 B 1 HETATM 33 C C3 0FP . . . F 2 31.727 63.221 16.938 1 31.96 ? C3 0FP 560 B 1 HETATM 34 O O3 0FP . . . F 2 30.8 62.42 17.07 1 33.81 ? O3 0FP 560 B 1 HETATM 35 N N3 0FP . . . F 2 31.539 64.524 16.752 1 30.45 ? N3 0FP 560 B 1 HETATM 36 C CA4 0FP . . . F 2 30.205 65.104 16.677 1 29.71 ? CA4 0FP 560 B 1 HETATM 37 C C4 0FP . . . F 2 29.994 65.792 15.309 1 30.13 ? C4 0FP 560 B 1 HETATM 38 O O4 0FP . . . F 2 29.02 66.776 15.421 1 29.44 ? O4 0FP 560 B 1 HETATM 39 C CB4 0FP . . . F 2 30.017 66.108 17.793 1 30.38 ? CB4 0FP 560 B 1 HETATM 40 C C11 0FP . . . F 2 29.594 64.73 14.259 1 31.41 ? C11 0FP 560 B 1 HETATM 41 O O11 0FP . . . F 2 30.319 63.742 14.071 1 33.28 ? O11 0FP 560 B 1 HETATM 42 N N21 0FP . . . F 2 28.467 64.925 13.572 1 29.49 ? N21 0FP 560 B 1 HETATM 43 C C31 0FP . . . F 2 27.976 63.994 12.554 1 30.5 ? C31 0FP 560 B 1 HETATM 44 C C311 0FP . . . F 2 27.976 64.639 11.173 1 31.96 ? C311 0FP 560 B 1 HETATM 45 C C32 0FP . . . F 2 27.357 63.715 10.127 1 30.25 ? C32 0FP 560 B 1 HETATM 46 C C41 0FP . . . F 2 26.586 63.548 12.897 1 31.78 ? C41 0FP 560 B 1 HETATM 47 C C5 0FP . . . F 2 26.37 62.294 13.473 1 33.93 ? C5 0FP 560 B 1 HETATM 48 C C6 0FP . . . F 2 25.083 61.883 13.834 1 33.92 ? C6 0FP 560 B 1 HETATM 49 C C7 0FP . . . F 2 24.001 62.74 13.61 1 34.99 ? C7 0FP 560 B 1 HETATM 50 C C8 0FP . . . F 2 24.214 63.993 13.029 1 32.05 ? C8 0FP 560 B 1 HETATM 51 C C9 0FP . . . F 2 25.496 64.384 12.679 1 30.88 ? C9 0FP 560 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #