data_1NL4 # _model_server_result.job_id UiZa1y35RmBKu0QBy6FEEQ _model_server_result.datetime_utc '2024-11-22 09:40:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1NL4 # _exptl.entry_id 1NL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.537 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3-CYANO-BENZYL)-(3-METHYL-3H-IMIDAZOL-4-YLMETHYL)-AMINO]-2-NAPHTHALEN-1-YL-BENZONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NL4 _cell.length_a 168.62 _cell.length_b 168.62 _cell.length_c 69.123 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E N3 FTL . B FTL 1 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 B OD1 ASP 275 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 B OD2 ASP 275 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 B SG CYS 277 B CYS 299 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 B NE2 HIS 340 B HIS 362 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'C30 H23 N5' _chem_comp.formula_weight 453.537 _chem_comp.id FTL _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3-CYANO-BENZYL)-(3-METHYL-3H-IMIDAZOL-4-YLMETHYL)-AMINO]-2-NAPHTHALEN-1-YL-BENZONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N2 FTL sing 83 n n C8 C11 FTL sing 84 n n C8 HC81 FTL sing 85 n n C8 HC82 FTL sing 86 n n N2 C40 FTL sing 87 n n N2 C18 FTL sing 88 n n C40 C43 FTL doub 89 n y C40 C47 FTL sing 90 n y C43 C44 FTL sing 91 n y C43 HC43 FTL sing 92 n n C44 C45 FTL doub 93 n y C44 HC44 FTL sing 94 n n C45 C46 FTL sing 95 n y C45 C65 FTL sing 96 n n C46 C47 FTL doub 97 n y C46 C51 FTL sing 98 n y C47 HC47 FTL sing 99 n n C51 C52 FTL doub 100 n y C51 C56 FTL sing 101 n y C52 C53 FTL sing 102 n y C52 C2 FTL sing 103 n y C53 C54 FTL doub 104 n y C53 C7 FTL sing 105 n y C54 C55 FTL sing 106 n y C54 HC54 FTL sing 107 n n C55 C56 FTL doub 108 n y C55 HC55 FTL sing 109 n n C56 HC56 FTL sing 110 n n C65 N1 FTL trip 111 n n C7 C3 FTL doub 112 n y C7 HC7 FTL sing 113 n n C2 C4 FTL doub 114 n y C2 HC2 FTL sing 115 n n C3 C4 FTL sing 116 n y C3 HC3 FTL sing 117 n n C4 HC4 FTL sing 118 n n N3 C10 FTL sing 119 n y N3 C5 FTL doub 120 n y C10 C12 FTL doub 121 n y C10 HC10 FTL sing 122 n n C12 N4 FTL sing 123 n y C12 C18 FTL sing 124 n n N4 C5 FTL sing 125 n y N4 C15 FTL sing 126 n n C5 HC5 FTL sing 127 n n C15 H151 FTL sing 128 n n C15 H152 FTL sing 129 n n C15 H153 FTL sing 130 n n C16 C11 FTL doub 131 n y C16 C6 FTL sing 132 n y C16 HC16 FTL sing 133 n n C11 C13 FTL sing 134 n y C13 C14 FTL doub 135 n y C13 HC13 FTL sing 136 n n C14 C17 FTL sing 137 n y C14 C9 FTL sing 138 n n C17 C6 FTL doub 139 n y C17 HC17 FTL sing 140 n n C6 HC6 FTL sing 141 n n C9 N5 FTL trip 142 n n C18 H181 FTL sing 143 n n C18 H182 FTL sing 144 n n # _atom_sites.entry_id 1NL4 _atom_sites.fract_transf_matrix[1][1] 0.00593 _atom_sites.fract_transf_matrix[1][2] 0.003424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 500 500 ZN ZNK . D 4 HFP B 1 501 501 HFP HFP . E 5 FTL B 1 1 1 FTL LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 FTL . . . E 5 49.632 49.505 -2.505 1 30 ? C8 FTL 1 B 1 HETATM 2 N N2 FTL . . . E 5 49.655 48.288 -1.652 1 30 ? N2 FTL 1 B 1 HETATM 3 C C40 FTL . . . E 5 50.698 48.023 -0.774 1 30 ? C40 FTL 1 B 1 HETATM 4 C C43 FTL . . . E 5 50.769 46.801 -0.058 1 30 ? C43 FTL 1 B 1 HETATM 5 C C44 FTL . . . E 5 51.868 46.522 0.779 1 30 ? C44 FTL 1 B 1 HETATM 6 C C45 FTL . . . E 5 52.902 47.474 0.909 1 30 ? C45 FTL 1 B 1 HETATM 7 C C46 FTL . . . E 5 52.851 48.69 0.213 1 30 ? C46 FTL 1 B 1 HETATM 8 C C47 FTL . . . E 5 51.745 48.956 -0.625 1 30 ? C47 FTL 1 B 1 HETATM 9 C C51 FTL . . . E 5 53.908 49.751 0.3 1 30 ? C51 FTL 1 B 1 HETATM 10 C C52 FTL . . . E 5 53.617 51.063 0.768 1 30 ? C52 FTL 1 B 1 HETATM 11 C C53 FTL . . . E 5 54.671 52.069 0.768 1 30 ? C53 FTL 1 B 1 HETATM 12 C C54 FTL . . . E 5 55.961 51.733 0.314 1 30 ? C54 FTL 1 B 1 HETATM 13 C C55 FTL . . . E 5 56.232 50.426 -0.137 1 30 ? C55 FTL 1 B 1 HETATM 14 C C56 FTL . . . E 5 55.217 49.448 -0.143 1 30 ? C56 FTL 1 B 1 HETATM 15 C C65 FTL . . . E 5 53.997 47.162 1.802 1 30 ? C65 FTL 1 B 1 HETATM 16 C C7 FTL . . . E 5 54.4 53.377 1.22 1 30 ? C7 FTL 1 B 1 HETATM 17 N N1 FTL . . . E 5 54.876 46.923 2.521 1 30 ? N1 FTL 1 B 1 HETATM 18 C C2 FTL . . . E 5 52.33 51.426 1.238 1 30 ? C2 FTL 1 B 1 HETATM 19 C C3 FTL . . . E 5 53.106 53.705 1.677 1 30 ? C3 FTL 1 B 1 HETATM 20 C C4 FTL . . . E 5 52.08 52.737 1.69 1 30 ? C4 FTL 1 B 1 HETATM 21 N N3 FTL . . . E 5 49.699 45.488 -4.958 1 30 ? N3 FTL 1 B 1 HETATM 22 C C10 FTL . . . E 5 49.999 46.381 -3.961 1 30 ? C10 FTL 1 B 1 HETATM 23 C C12 FTL . . . E 5 48.824 46.416 -3.157 1 30 ? C12 FTL 1 B 1 HETATM 24 N N4 FTL . . . E 5 47.912 45.577 -3.679 1 30 ? N4 FTL 1 B 1 HETATM 25 C C5 FTL . . . E 5 48.421 44.985 -4.799 1 30 ? C5 FTL 1 B 1 HETATM 26 C C15 FTL . . . E 5 46.575 45.317 -3.128 1 30 ? C15 FTL 1 B 1 HETATM 27 C C16 FTL . . . E 5 48.675 51.211 -0.777 1 30 ? C16 FTL 1 B 1 HETATM 28 C C11 FTL . . . E 5 49.275 50.912 -2.021 1 30 ? C11 FTL 1 B 1 HETATM 29 C C13 FTL . . . E 5 49.556 51.958 -2.925 1 30 ? C13 FTL 1 B 1 HETATM 30 C C14 FTL . . . E 5 49.233 53.286 -2.591 1 30 ? C14 FTL 1 B 1 HETATM 31 C C17 FTL . . . E 5 48.638 53.575 -1.349 1 30 ? C17 FTL 1 B 1 HETATM 32 C C6 FTL . . . E 5 48.354 52.543 -0.433 1 30 ? C6 FTL 1 B 1 HETATM 33 C C9 FTL . . . E 5 49.486 54.349 -3.529 1 30 ? C9 FTL 1 B 1 HETATM 34 N N5 FTL . . . E 5 49.681 55.204 -4.289 1 30 ? N5 FTL 1 B 1 HETATM 35 C C18 FTL . . . E 5 48.608 47.277 -1.909 1 30 ? C18 FTL 1 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 35 #