data_1NLM # _model_server_result.job_id zSxIiXf4AtvS_aAvd3mXmQ _model_server_result.datetime_utc '2025-07-31 13:20:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1NLM # _exptl.entry_id 1NLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NLM _cell.length_a 66.703 _cell.length_b 83.651 _cell.length_c 146.245 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 371 n n C1' O1' UD1 sing 372 n n C1' O5' UD1 sing 373 n n C1' H1' UD1 sing 374 n n C2' C3' UD1 sing 375 n n C2' N2' UD1 sing 376 n n C2' H2' UD1 sing 377 n n C3' C4' UD1 sing 378 n n C3' O3' UD1 sing 379 n n C3' H3' UD1 sing 380 n n C4' C5' UD1 sing 381 n n C4' O4' UD1 sing 382 n n C4' H4' UD1 sing 383 n n C5' C6' UD1 sing 384 n n C5' O5' UD1 sing 385 n n C5' H5' UD1 sing 386 n n C6' O6' UD1 sing 387 n n C6' "H6'1" UD1 sing 388 n n C6' "H6'2" UD1 sing 389 n n C7' C8' UD1 sing 390 n n C7' N2' UD1 sing 391 n n C7' O7' UD1 doub 392 n n C8' "H8'1" UD1 sing 393 n n C8' "H8'2" UD1 sing 394 n n C8' "H8'3" UD1 sing 395 n n N2' HN2' UD1 sing 396 n n O1' PB UD1 sing 397 n n O3' HO3' UD1 sing 398 n n O4' HO4' UD1 sing 399 n n O6' HO6' UD1 sing 400 n n N1 C2 UD1 sing 401 n n N1 C6 UD1 sing 402 n n N1 C1B UD1 sing 403 n n C2 N3 UD1 sing 404 n n C2 O2 UD1 doub 405 n n N3 C4 UD1 sing 406 n n N3 HN3 UD1 sing 407 n n C4 C5 UD1 sing 408 n n C4 O4 UD1 doub 409 n n C5 C6 UD1 doub 410 n n C5 H5 UD1 sing 411 n n C6 H6 UD1 sing 412 n n C1B C2B UD1 sing 413 n n C1B O4B UD1 sing 414 n n C1B H1B UD1 sing 415 n n C2B O2' UD1 sing 416 n n C2B C3B UD1 sing 417 n n C2B H2B UD1 sing 418 n n O2' HO2' UD1 sing 419 n n C3B C4B UD1 sing 420 n n C3B O3B UD1 sing 421 n n C3B H3B UD1 sing 422 n n C4B O4B UD1 sing 423 n n C4B C5B UD1 sing 424 n n C4B H4B UD1 sing 425 n n O3B HO3A UD1 sing 426 n n C5B O5B UD1 sing 427 n n C5B "H5'1" UD1 sing 428 n n C5B "H5'2" UD1 sing 429 n n O5B PA UD1 sing 430 n n PA O1A UD1 doub 431 n n PA O2A UD1 sing 432 n n PA O3A UD1 sing 433 n n O2A HOA2 UD1 sing 434 n n O3A PB UD1 sing 435 n n PB O1B UD1 doub 436 n n PB O2B UD1 sing 437 n n O2B HOB2 UD1 sing 438 n n # _atom_sites.entry_id 1NLM _atom_sites.fract_transf_matrix[1][1] 0.014992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UD1 A 1 401 401 UD1 UD1 . D 3 GOL A 1 501 501 GOL GOL . E 3 GOL A 1 502 502 GOL GOL . F 3 GOL A 1 503 503 GOL GOL . G 2 UD1 B 1 402 402 UD1 UD1 . H 3 GOL B 1 504 504 GOL GOL . I 4 HOH A 1 504 3 HOH HOH . I 4 HOH A 2 505 4 HOH HOH . I 4 HOH A 3 506 5 HOH HOH . I 4 HOH A 4 507 6 HOH HOH . I 4 HOH A 5 508 7 HOH HOH . I 4 HOH A 6 509 8 HOH HOH . I 4 HOH A 7 510 9 HOH HOH . I 4 HOH A 8 511 14 HOH HOH . I 4 HOH A 9 512 18 HOH HOH . I 4 HOH A 10 513 20 HOH HOH . I 4 HOH A 11 514 21 HOH HOH . I 4 HOH A 12 515 22 HOH HOH . I 4 HOH A 13 516 24 HOH HOH . I 4 HOH A 14 517 25 HOH HOH . I 4 HOH A 15 518 26 HOH HOH . I 4 HOH A 16 519 27 HOH HOH . I 4 HOH A 17 520 29 HOH HOH . I 4 HOH A 18 521 30 HOH HOH . I 4 HOH A 19 522 31 HOH HOH . I 4 HOH A 20 523 35 HOH HOH . I 4 HOH A 21 524 36 HOH HOH . I 4 HOH A 22 525 37 HOH HOH . I 4 HOH A 23 526 38 HOH HOH . I 4 HOH A 24 527 40 HOH HOH . I 4 HOH A 25 528 41 HOH HOH . I 4 HOH A 26 529 43 HOH HOH . I 4 HOH A 27 530 44 HOH HOH . I 4 HOH A 28 531 45 HOH HOH . I 4 HOH A 29 532 48 HOH HOH . I 4 HOH A 30 533 49 HOH HOH . I 4 HOH A 31 534 50 HOH HOH . I 4 HOH A 32 535 51 HOH HOH . I 4 HOH A 33 536 54 HOH HOH . I 4 HOH A 34 537 55 HOH HOH . I 4 HOH A 35 538 56 HOH HOH . I 4 HOH A 36 539 57 HOH HOH . I 4 HOH A 37 540 62 HOH HOH . I 4 HOH A 38 541 67 HOH HOH . I 4 HOH A 39 542 68 HOH HOH . I 4 HOH A 40 543 69 HOH HOH . I 4 HOH A 41 544 73 HOH HOH . I 4 HOH A 42 545 75 HOH HOH . I 4 HOH A 43 546 76 HOH HOH . I 4 HOH A 44 547 79 HOH HOH . I 4 HOH A 45 548 84 HOH HOH . I 4 HOH A 46 549 86 HOH HOH . I 4 HOH A 47 550 90 HOH HOH . I 4 HOH A 48 551 92 HOH HOH . I 4 HOH A 49 552 93 HOH HOH . I 4 HOH A 50 553 94 HOH HOH . I 4 HOH A 51 554 97 HOH HOH . I 4 HOH A 52 555 98 HOH HOH . I 4 HOH A 53 556 99 HOH HOH . I 4 HOH A 54 557 104 HOH HOH . I 4 HOH A 55 558 105 HOH HOH . I 4 HOH A 56 559 107 HOH HOH . I 4 HOH A 57 560 108 HOH HOH . I 4 HOH A 58 561 109 HOH HOH . I 4 HOH A 59 562 110 HOH HOH . I 4 HOH A 60 563 112 HOH HOH . I 4 HOH A 61 564 113 HOH HOH . I 4 HOH A 62 565 114 HOH HOH . I 4 HOH A 63 566 115 HOH HOH . I 4 HOH A 64 567 117 HOH HOH . I 4 HOH A 65 568 119 HOH HOH . J 4 HOH B 1 505 1 HOH HOH . J 4 HOH B 2 506 10 HOH HOH . J 4 HOH B 3 507 12 HOH HOH . J 4 HOH B 4 508 15 HOH HOH . J 4 HOH B 5 509 16 HOH HOH . J 4 HOH B 6 510 17 HOH HOH . J 4 HOH B 7 511 19 HOH HOH . J 4 HOH B 8 512 23 HOH HOH . J 4 HOH B 9 513 28 HOH HOH . J 4 HOH B 10 514 32 HOH HOH . J 4 HOH B 11 515 33 HOH HOH . J 4 HOH B 12 516 34 HOH HOH . J 4 HOH B 13 517 39 HOH HOH . J 4 HOH B 14 518 42 HOH HOH . J 4 HOH B 15 519 46 HOH HOH . J 4 HOH B 16 520 47 HOH HOH . J 4 HOH B 17 521 52 HOH HOH . J 4 HOH B 18 522 53 HOH HOH . J 4 HOH B 19 523 59 HOH HOH . J 4 HOH B 20 524 60 HOH HOH . J 4 HOH B 21 525 63 HOH HOH . J 4 HOH B 22 526 64 HOH HOH . J 4 HOH B 23 527 65 HOH HOH . J 4 HOH B 24 528 66 HOH HOH . J 4 HOH B 25 529 70 HOH HOH . J 4 HOH B 26 530 71 HOH HOH . J 4 HOH B 27 531 72 HOH HOH . J 4 HOH B 28 532 74 HOH HOH . J 4 HOH B 29 533 77 HOH HOH . J 4 HOH B 30 534 80 HOH HOH . J 4 HOH B 31 535 81 HOH HOH . J 4 HOH B 32 536 82 HOH HOH . J 4 HOH B 33 537 83 HOH HOH . J 4 HOH B 34 538 87 HOH HOH . J 4 HOH B 35 539 88 HOH HOH . J 4 HOH B 36 540 89 HOH HOH . J 4 HOH B 37 541 91 HOH HOH . J 4 HOH B 38 542 95 HOH HOH . J 4 HOH B 39 543 96 HOH HOH . J 4 HOH B 40 544 100 HOH HOH . J 4 HOH B 41 545 101 HOH HOH . J 4 HOH B 42 546 102 HOH HOH . J 4 HOH B 43 547 103 HOH HOH . J 4 HOH B 44 548 106 HOH HOH . J 4 HOH B 45 549 111 HOH HOH . J 4 HOH B 46 550 116 HOH HOH . J 4 HOH B 47 551 118 HOH HOH . J 4 HOH B 48 552 120 HOH HOH . J 4 HOH B 49 553 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . C 2 38.513 -6.728 23.841 1 36.22 ? C1' UD1 401 A 1 HETATM 2 C C2' UD1 . . . C 2 39.249 -6.9 25.18 1 38.07 ? C2' UD1 401 A 1 HETATM 3 C C3' UD1 . . . C 2 40.736 -6.559 24.981 1 34.43 ? C3' UD1 401 A 1 HETATM 4 C C4' UD1 . . . C 2 41.356 -7.393 23.851 1 34.79 ? C4' UD1 401 A 1 HETATM 5 C C5' UD1 . . . C 2 40.541 -7.266 22.572 1 32.57 ? C5' UD1 401 A 1 HETATM 6 C C6' UD1 . . . C 2 41.014 -8.236 21.509 1 37.51 ? C6' UD1 401 A 1 HETATM 7 C C7' UD1 . . . C 2 38.37 -6.471 27.403 1 37.33 ? C7' UD1 401 A 1 HETATM 8 C C8' UD1 . . . C 2 37.294 -7.541 27.559 1 40.79 ? C8' UD1 401 A 1 HETATM 9 N N2' UD1 . . . C 2 38.659 -6.023 26.179 1 40.06 ? N2' UD1 401 A 1 HETATM 10 O O1' UD1 . . . C 2 38.603 -5.344 23.414 1 36.62 ? O1' UD1 401 A 1 HETATM 11 O O3' UD1 . . . C 2 41.44 -6.753 26.202 1 40.1 ? O3' UD1 401 A 1 HETATM 12 O O4' UD1 . . . C 2 42.683 -6.954 23.586 1 31.28 ? O4' UD1 401 A 1 HETATM 13 O O5' UD1 . . . C 2 39.155 -7.56 22.845 1 32.53 ? O5' UD1 401 A 1 HETATM 14 O O6' UD1 . . . C 2 40.591 -7.827 20.22 1 36.82 ? O6' UD1 401 A 1 HETATM 15 O O7' UD1 . . . C 2 38.958 -6.001 28.391 1 33.66 ? O7' UD1 401 A 1 HETATM 16 N N1 UD1 . . . C 2 35.349 0.301 17.247 1 46.66 ? N1 UD1 401 A 1 HETATM 17 C C2 UD1 . . . C 2 34.494 0.976 16.394 1 50.21 ? C2 UD1 401 A 1 HETATM 18 N N3 UD1 . . . C 2 33.708 1.926 16.994 1 53.42 ? N3 UD1 401 A 1 HETATM 19 C C4 UD1 . . . C 2 33.685 2.261 18.333 1 49.8 ? C4 UD1 401 A 1 HETATM 20 C C5 UD1 . . . C 2 34.593 1.517 19.15 1 47.36 ? C5 UD1 401 A 1 HETATM 21 C C6 UD1 . . . C 2 35.375 0.586 18.595 1 42.63 ? C6 UD1 401 A 1 HETATM 22 O O2 UD1 . . . C 2 34.434 0.746 15.206 1 47.2 ? O2 UD1 401 A 1 HETATM 23 O O4 UD1 . . . C 2 32.907 3.128 18.724 1 52.38 ? O4 UD1 401 A 1 HETATM 24 C C1B UD1 . . . C 2 36.22 -0.73 16.668 1 43.04 ? C1B UD1 401 A 1 HETATM 25 C C2B UD1 . . . C 2 37.699 -0.356 16.593 1 46.33 ? C2B UD1 401 A 1 HETATM 26 O O2' UD1 . . . C 2 37.996 0.342 15.399 1 49.92 ? O2' UD1 401 A 1 HETATM 27 C C3B UD1 . . . C 2 38.353 -1.73 16.615 1 43.86 ? C3B UD1 401 A 1 HETATM 28 C C4B UD1 . . . C 2 37.439 -2.531 17.525 1 46.26 ? C4B UD1 401 A 1 HETATM 29 O O4B UD1 . . . C 2 36.149 -1.867 17.494 1 47.49 ? O4B UD1 401 A 1 HETATM 30 O O3B UD1 . . . C 2 38.375 -2.328 15.326 1 45.13 ? O3B UD1 401 A 1 HETATM 31 C C5B UD1 . . . C 2 37.906 -2.61 18.946 1 45.72 ? C5B UD1 401 A 1 HETATM 32 O O5B UD1 . . . C 2 38.185 -3.951 19.285 1 45.97 ? O5B UD1 401 A 1 HETATM 33 P PA UD1 . . . C 2 39.071 -4.293 20.559 1 49.25 ? PA UD1 401 A 1 HETATM 34 O O1A UD1 . . . C 2 38.929 -5.761 20.727 1 56.21 ? O1A UD1 401 A 1 HETATM 35 O O2A UD1 . . . C 2 40.417 -3.751 20.262 1 55.84 ? O2A UD1 401 A 1 HETATM 36 O O3A UD1 . . . C 2 38.284 -3.687 21.677 1 41.31 ? O3A UD1 401 A 1 HETATM 37 P PB UD1 . . . C 2 37.497 -4.668 22.482 1 46.3 ? PB UD1 401 A 1 HETATM 38 O O1B UD1 . . . C 2 36.793 -5.765 21.775 1 42.62 ? O1B UD1 401 A 1 HETATM 39 O O2B UD1 . . . C 2 36.467 -4.144 23.406 1 52.94 ? O2B UD1 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #