data_1NLY # _model_server_result.job_id tTTiwepXvHYPKtaNcPznQg _model_server_result.datetime_utc '2025-03-05 01:51:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 1NLY # _exptl.entry_id 1NLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NLY _cell.length_a 110.82 _cell.length_b 110.82 _cell.length_c 230.91 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.41 95.972935 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -55.41 95.972935 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 41 A LYS 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 42 A MSE 42 1_555 A N GLU 43 A GLU 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LEU 81 A LEU 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 82 A MSE 82 1_555 A N HIS 83 A HIS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ILE 191 A ILE 191 1_555 A N MSE 192 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 192 A MSE 192 1_555 A N GLU 193 A GLU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C ARG 238 A ARG 238 1_555 A N MSE 239 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 239 A MSE 239 1_555 A N ARG 240 A ARG 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C ASN 286 A ASN 286 1_555 A N MSE 287 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MSE 287 A MSE 287 1_555 A N SER 288 A SER 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C ASP 311 A ASP 311 1_555 A N MSE 312 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 312 A MSE 312 1_555 A N ILE 313 A ILE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C LYS 41 B LYS 41 1_555 B N MSE 42 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale14 B C MSE 42 B MSE 42 1_555 B N GLU 43 B GLU 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 B C LEU 81 B LEU 81 1_555 B N MSE 82 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 82 B MSE 82 1_555 B N HIS 83 B HIS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C ILE 191 B ILE 191 1_555 B N MSE 192 B MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 B C MSE 192 B MSE 192 1_555 B N GLU 193 B GLU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C ARG 238 B ARG 238 1_555 B N MSE 239 B MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C MSE 239 B MSE 239 1_555 B N ARG 240 B ARG 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 B C ASN 286 B ASN 286 1_555 B N MSE 287 B MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 B C MSE 287 B MSE 287 1_555 B N SER 288 B SER 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 B C ASP 311 B ASP 311 1_555 B N MSE 312 B MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale24 B C MSE 312 B MSE 312 1_555 B N ILE 313 B ILE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OG1 THR 185 A THR 185 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? metalc ? metalc2 C MG MG . A MG 401 1_555 D O2B AGS . A AGS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 C MG MG . A MG 401 1_555 H O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 423 n n S O2 SO4 doub 424 n n S O3 SO4 sing 425 n n S O4 SO4 sing 426 n n # _atom_sites.entry_id 1NLY _atom_sites.fract_transf_matrix[1][1] 0.009024 _atom_sites.fract_transf_matrix[1][2] 0.00521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 700 MG MG2 . D 3 AGS A 1 402 400 AGS ATG . E 4 SO4 B 1 401 800 SO4 SO4 . F 3 AGS B 1 402 500 AGS ATG . G 5 2PE B 1 403 600 2PE PEG . H 6 HOH A 1 1001 1001 HOH HOH . H 6 HOH A 2 1002 1002 HOH HOH . H 6 HOH A 3 1003 1003 HOH HOH . H 6 HOH A 4 1004 1004 HOH HOH . H 6 HOH A 5 1005 1005 HOH HOH . H 6 HOH A 6 1006 1006 HOH HOH . H 6 HOH A 7 1007 1007 HOH HOH . H 6 HOH A 8 1008 1008 HOH HOH . H 6 HOH A 9 1009 1010 HOH HOH . H 6 HOH A 10 1010 1011 HOH HOH . H 6 HOH A 11 1011 1012 HOH HOH . H 6 HOH A 12 1012 1013 HOH HOH . H 6 HOH A 13 1013 1015 HOH HOH . H 6 HOH A 14 1014 1025 HOH HOH . H 6 HOH A 15 1015 1027 HOH HOH . H 6 HOH A 16 1016 1032 HOH HOH . H 6 HOH A 17 1017 1033 HOH HOH . H 6 HOH A 18 1018 1034 HOH HOH . H 6 HOH A 19 1019 1035 HOH HOH . H 6 HOH A 20 1020 1036 HOH HOH . H 6 HOH A 21 1021 1041 HOH HOH . H 6 HOH A 22 1022 1042 HOH HOH . I 6 HOH B 1 501 1009 HOH HOH . I 6 HOH B 2 502 1014 HOH HOH . I 6 HOH B 3 503 1016 HOH HOH . I 6 HOH B 4 504 1017 HOH HOH . I 6 HOH B 5 505 1018 HOH HOH . I 6 HOH B 6 506 1019 HOH HOH . I 6 HOH B 7 507 1020 HOH HOH . I 6 HOH B 8 508 1021 HOH HOH . I 6 HOH B 9 509 1022 HOH HOH . I 6 HOH B 10 510 1023 HOH HOH . I 6 HOH B 11 511 1024 HOH HOH . I 6 HOH B 12 512 1026 HOH HOH . I 6 HOH B 13 513 1028 HOH HOH . I 6 HOH B 14 514 1029 HOH HOH . I 6 HOH B 15 515 1030 HOH HOH . I 6 HOH B 16 516 1031 HOH HOH . I 6 HOH B 17 517 1037 HOH HOH . I 6 HOH B 18 518 1038 HOH HOH . I 6 HOH B 19 519 1039 HOH HOH . I 6 HOH B 20 520 1040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 4 -10.855 28.389 21.997 0.5 25.36 ? S SO4 401 B 1 HETATM 2 O O1 SO4 . . . E 4 -11.498 29.417 22.975 0.5 26.85 ? O1 SO4 401 B 1 HETATM 3 O O2 SO4 . . . E 4 -9.503 28.18 22.553 0.5 25.82 ? O2 SO4 401 B 1 HETATM 4 O O3 SO4 . . . E 4 -11.685 27.275 22.113 0.5 24.96 ? O3 SO4 401 B 1 HETATM 5 O O4 SO4 . . . E 4 -10.781 28.936 20.608 0.5 19.41 ? O4 SO4 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 5 #