data_1NM5 # _model_server_result.job_id nV04R3m-gM5P-JHCiK36uQ _model_server_result.datetime_utc '2024-11-11 11:54:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 1NM5 # _exptl.entry_id 1NM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NM5 _cell.length_a 71.939 _cell.length_b 73.886 _cell.length_c 205.257 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1NM5 _atom_sites.fract_transf_matrix[1][1] 0.013901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 400 400 NAD NAD . E 3 NAD B 1 500 500 NAD NAD . F 4 GOL B 1 501 1 GOL GOL . G 5 NAP C 1 300 300 NAP NAP . H 6 HOH A 1 401 2 HOH HOH . H 6 HOH A 2 402 5 HOH HOH . H 6 HOH A 3 403 7 HOH HOH . H 6 HOH A 4 404 8 HOH HOH . H 6 HOH A 5 405 12 HOH HOH . H 6 HOH A 6 406 14 HOH HOH . H 6 HOH A 7 407 15 HOH HOH . H 6 HOH A 8 408 18 HOH HOH . H 6 HOH A 9 409 26 HOH HOH . H 6 HOH A 10 410 28 HOH HOH . H 6 HOH A 11 411 32 HOH HOH . H 6 HOH A 12 412 34 HOH HOH . H 6 HOH A 13 413 35 HOH HOH . H 6 HOH A 14 414 36 HOH HOH . H 6 HOH A 15 415 38 HOH HOH . H 6 HOH A 16 416 39 HOH HOH . H 6 HOH A 17 417 40 HOH HOH . H 6 HOH A 18 418 45 HOH HOH . H 6 HOH A 19 419 48 HOH HOH . H 6 HOH A 20 420 52 HOH HOH . H 6 HOH A 21 421 57 HOH HOH . H 6 HOH A 22 422 58 HOH HOH . H 6 HOH A 23 423 59 HOH HOH . H 6 HOH A 24 424 60 HOH HOH . H 6 HOH A 25 425 61 HOH HOH . H 6 HOH A 26 426 62 HOH HOH . H 6 HOH A 27 427 67 HOH HOH . H 6 HOH A 28 428 68 HOH HOH . I 6 HOH B 1 502 4 HOH HOH . I 6 HOH B 2 503 6 HOH HOH . I 6 HOH B 3 504 9 HOH HOH . I 6 HOH B 4 505 10 HOH HOH . I 6 HOH B 5 506 11 HOH HOH . I 6 HOH B 6 507 13 HOH HOH . I 6 HOH B 7 508 16 HOH HOH . I 6 HOH B 8 509 17 HOH HOH . I 6 HOH B 9 510 20 HOH HOH . I 6 HOH B 10 511 21 HOH HOH . I 6 HOH B 11 512 22 HOH HOH . I 6 HOH B 12 513 23 HOH HOH . I 6 HOH B 13 514 24 HOH HOH . I 6 HOH B 14 515 27 HOH HOH . I 6 HOH B 15 516 29 HOH HOH . I 6 HOH B 16 517 31 HOH HOH . I 6 HOH B 17 518 33 HOH HOH . I 6 HOH B 18 519 37 HOH HOH . I 6 HOH B 19 520 41 HOH HOH . I 6 HOH B 20 521 42 HOH HOH . I 6 HOH B 21 522 43 HOH HOH . I 6 HOH B 22 523 44 HOH HOH . I 6 HOH B 23 524 46 HOH HOH . I 6 HOH B 24 525 47 HOH HOH . I 6 HOH B 25 526 49 HOH HOH . I 6 HOH B 26 527 50 HOH HOH . I 6 HOH B 27 528 51 HOH HOH . I 6 HOH B 28 529 55 HOH HOH . I 6 HOH B 29 530 56 HOH HOH . I 6 HOH B 30 531 65 HOH HOH . I 6 HOH B 31 532 69 HOH HOH . J 6 HOH C 1 301 3 HOH HOH . J 6 HOH C 2 302 19 HOH HOH . J 6 HOH C 3 303 30 HOH HOH . J 6 HOH C 4 304 53 HOH HOH . J 6 HOH C 5 305 54 HOH HOH . J 6 HOH C 6 306 63 HOH HOH . J 6 HOH C 7 307 64 HOH HOH . J 6 HOH C 8 308 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -21.655 -34.306 35.242 1 83.25 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . F 4 -21.016 -34.078 34.001 1 82.01 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . F 4 -21.053 -33.512 36.425 1 82.33 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . F 4 -19.631 -33.528 36.42 1 83.46 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . F 4 -21.562 -34.112 37.744 1 80.3 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . F 4 -22.763 -34.82 37.531 0.8 77.38 ? O3 GOL 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #