data_1NMQ
#
_model_server_result.job_id            '_mnNtfxE0V89NFIlUFACQA' 
_model_server_result.datetime_utc      '2024-11-23 05:51:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nmq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":5278}' 
#
_entry.id    1NMQ 
#
_exptl.entry_id    1NMQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              580.738 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-(3-{2-[(5-METHANESULFONYL-THIOPHENE-2-CARBONYL)-AMINO]-ETHYLDISULFANYLMETHYL}- BENZENESULFONYLAMINO)-4-OXO-PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NMQ 
_cell.length_a            68.858 
_cell.length_b            89.043 
_cell.length_c            96.531 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NMQ 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 135 A CYS 163 1_555 C C1 160 . A 160 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
covale ? covale2 B SG CYS 135 B CYS 163 1_555 D C1 160 . B 160 5278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
#
_chem_comp.formula           'C20 H24 N2 O8 S5' 
_chem_comp.formula_weight    580.738 
_chem_comp.id                160 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-(3-{2-[(5-METHANESULFONYL-THIOPHENE-2-CARBONYL)-AMINO]-ETHYLDISULFANYLMETHYL}- BENZENESULFONYLAMINO)-4-OXO-PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O35 C18 160 doub 1 n n 
C18 C19 160 sing 2 n n 
C18 N17 160 sing 3 n n 
C19 S20 160 sing 4 n y 
C19 C23 160 doub 5 n y 
S20 C21 160 sing 6 n y 
C21 S24 160 sing 7 n n 
C21 C22 160 doub 8 n y 
S24 O33 160 doub 9 n n 
S24 O34 160 doub 10 n n 
S24 C25 160 sing 11 n n 
C25 H251 160 sing 12 n n 
C25 H252 160 sing 13 n n 
C25 H253 160 sing 14 n n 
C22 C23 160 sing 15 n y 
C22 H22 160 sing 16 n n 
C23 H23 160 sing 17 n n 
N17 C16 160 sing 18 n n 
N17 H17 160 sing 19 n n 
C16 C15 160 sing 20 n n 
C16 H161 160 sing 21 n n 
C16 H162 160 sing 22 n n 
C15 S14 160 sing 23 n n 
C15 H151 160 sing 24 n n 
C15 H152 160 sing 25 n n 
S14 S13 160 sing 26 n n 
S13 C12 160 sing 27 n n 
C12 C8 160 sing 28 n n 
C12 H121 160 sing 29 n n 
C12 H122 160 sing 30 n n 
C8 C9 160 doub 31 n y 
C8 C7 160 sing 32 n y 
C9 C10 160 sing 33 n y 
C9 H9 160 sing 34 n n 
C10 C11 160 doub 35 n y 
C10 H10 160 sing 36 n n 
C11 C6 160 sing 37 n y 
C11 H11 160 sing 38 n n 
C7 C6 160 doub 39 n y 
C7 H7 160 sing 40 n n 
C6 S5 160 sing 41 n n 
S5 O27 160 doub 42 n n 
S5 O28 160 doub 43 n n 
S5 N4 160 sing 44 n n 
N4 C3 160 sing 45 n n 
N4 H4 160 sing 46 n n 
C3 C2 160 sing 47 n n 
C3 C29 160 sing 48 n n 
C3 H3 160 sing 49 n n 
C2 O26 160 doub 50 n n 
C2 C1 160 sing 51 n n 
C1 H11A 160 sing 52 n n 
C1 H12 160 sing 53 n n 
C1 H13 160 sing 54 n n 
C29 C30 160 sing 55 n n 
C29 H291 160 sing 56 n n 
C29 H292 160 sing 57 n n 
C30 O31 160 sing 58 n n 
C30 O32 160 doub 59 n n 
O31 H31 160 sing 60 n n 
#
_atom_sites.entry_id                     1NMQ 
_atom_sites.fract_transf_matrix[1][1]    0.014523 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 160 A 1 1278 1278 160 160 . 
D 2 160 B 1 5278 5278 160 160 . 
E 3 HOH A 1 1279 1 HOH HOH . 
E 3 HOH A 2 1280 3 HOH HOH . 
E 3 HOH A 3 1281 4 HOH HOH . 
E 3 HOH A 4 1282 5 HOH HOH . 
E 3 HOH A 5 1283 6 HOH HOH . 
E 3 HOH A 6 1284 7 HOH HOH . 
E 3 HOH A 7 1285 9 HOH HOH . 
E 3 HOH A 8 1286 10 HOH HOH . 
E 3 HOH A 9 1287 12 HOH HOH . 
E 3 HOH A 10 1288 18 HOH HOH . 
E 3 HOH A 11 1289 21 HOH HOH . 
E 3 HOH A 12 1290 25 HOH HOH . 
E 3 HOH A 13 1291 26 HOH HOH . 
E 3 HOH A 14 1292 27 HOH HOH . 
E 3 HOH A 15 1293 28 HOH HOH . 
E 3 HOH A 16 1294 29 HOH HOH . 
E 3 HOH A 17 1295 31 HOH HOH . 
E 3 HOH A 18 1296 34 HOH HOH . 
E 3 HOH A 19 1297 35 HOH HOH . 
E 3 HOH A 20 1298 36 HOH HOH . 
E 3 HOH A 21 1299 37 HOH HOH . 
E 3 HOH A 22 1300 39 HOH HOH . 
E 3 HOH A 23 1301 40 HOH HOH . 
E 3 HOH A 24 1302 41 HOH HOH . 
E 3 HOH A 25 1303 42 HOH HOH . 
E 3 HOH A 26 1304 43 HOH HOH . 
E 3 HOH A 27 1305 44 HOH HOH . 
E 3 HOH A 28 1306 45 HOH HOH . 
E 3 HOH A 29 1307 48 HOH HOH . 
E 3 HOH A 30 1308 53 HOH HOH . 
E 3 HOH A 31 1309 57 HOH HOH . 
E 3 HOH A 32 1310 58 HOH HOH . 
E 3 HOH A 33 1311 61 HOH HOH . 
E 3 HOH A 34 1312 62 HOH HOH . 
E 3 HOH A 35 1313 63 HOH HOH . 
E 3 HOH A 36 1314 67 HOH HOH . 
E 3 HOH A 37 1315 71 HOH HOH . 
E 3 HOH A 38 1316 73 HOH HOH . 
E 3 HOH A 39 1317 74 HOH HOH . 
E 3 HOH A 40 1318 80 HOH HOH . 
E 3 HOH A 41 1319 81 HOH HOH . 
E 3 HOH A 42 1320 82 HOH HOH . 
E 3 HOH A 43 1321 83 HOH HOH . 
E 3 HOH A 44 1322 84 HOH HOH . 
E 3 HOH A 45 1323 86 HOH HOH . 
E 3 HOH A 46 1324 87 HOH HOH . 
E 3 HOH A 47 1325 88 HOH HOH . 
E 3 HOH A 48 1326 90 HOH HOH . 
E 3 HOH A 49 1327 91 HOH HOH . 
E 3 HOH A 50 1328 94 HOH HOH . 
E 3 HOH A 51 1329 95 HOH HOH . 
E 3 HOH A 52 1330 96 HOH HOH . 
E 3 HOH A 53 1331 99 HOH HOH . 
F 3 HOH B 1 5279 2 HOH HOH . 
F 3 HOH B 2 5280 8 HOH HOH . 
F 3 HOH B 3 5281 11 HOH HOH . 
F 3 HOH B 4 5282 13 HOH HOH . 
F 3 HOH B 5 5283 14 HOH HOH . 
F 3 HOH B 6 5284 15 HOH HOH . 
F 3 HOH B 7 5285 16 HOH HOH . 
F 3 HOH B 8 5286 17 HOH HOH . 
F 3 HOH B 9 5287 19 HOH HOH . 
F 3 HOH B 10 5288 20 HOH HOH . 
F 3 HOH B 11 5289 22 HOH HOH . 
F 3 HOH B 12 5290 23 HOH HOH . 
F 3 HOH B 13 5291 24 HOH HOH . 
F 3 HOH B 14 5292 30 HOH HOH . 
F 3 HOH B 15 5293 32 HOH HOH . 
F 3 HOH B 16 5294 33 HOH HOH . 
F 3 HOH B 17 5295 38 HOH HOH . 
F 3 HOH B 18 5296 46 HOH HOH . 
F 3 HOH B 19 5297 47 HOH HOH . 
F 3 HOH B 20 5298 49 HOH HOH . 
F 3 HOH B 21 5299 50 HOH HOH . 
F 3 HOH B 22 5300 51 HOH HOH . 
F 3 HOH B 23 5301 52 HOH HOH . 
F 3 HOH B 24 5302 54 HOH HOH . 
F 3 HOH B 25 5303 55 HOH HOH . 
F 3 HOH B 26 5304 56 HOH HOH . 
F 3 HOH B 27 5305 59 HOH HOH . 
F 3 HOH B 28 5306 60 HOH HOH . 
F 3 HOH B 29 5307 64 HOH HOH . 
F 3 HOH B 30 5308 65 HOH HOH . 
F 3 HOH B 31 5309 66 HOH HOH . 
F 3 HOH B 32 5310 68 HOH HOH . 
F 3 HOH B 33 5311 69 HOH HOH . 
F 3 HOH B 34 5312 70 HOH HOH . 
F 3 HOH B 35 5313 72 HOH HOH . 
F 3 HOH B 36 5314 75 HOH HOH . 
F 3 HOH B 37 5315 76 HOH HOH . 
F 3 HOH B 38 5316 77 HOH HOH . 
F 3 HOH B 39 5317 78 HOH HOH . 
F 3 HOH B 40 5318 79 HOH HOH . 
F 3 HOH B 41 5319 85 HOH HOH . 
F 3 HOH B 42 5320 89 HOH HOH . 
F 3 HOH B 43 5321 92 HOH HOH . 
F 3 HOH B 44 5322 93 HOH HOH . 
F 3 HOH B 45 5323 97 HOH HOH . 
F 3 HOH B 46 5324 98 HOH HOH . 
F 3 HOH B 47 5325 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O35 160 . . . D 2 6.956 33.828 35.79 1 59.92 ? O35 160 5278 B 1 
HETATM 2 C C18 160 . . . D 2 8.097 33.69 36.204 1 62.32 ? C18 160 5278 B 1 
HETATM 3 C C19 160 . . . D 2 8.976 34.883 36.313 1 63.15 ? C19 160 5278 B 1 
HETATM 4 S S20 160 . . . D 2 8.139 36.329 36.077 1 66.4 ? S20 160 5278 B 1 
HETATM 5 C C21 160 . . . D 2 9.606 37.094 36.314 1 59.46 ? C21 160 5278 B 1 
HETATM 6 S S24 160 . . . D 2 9.675 38.839 36.241 1 57.72 ? S24 160 5278 B 1 
HETATM 7 O O33 160 . . . D 2 10.858 39.236 35.449 1 57.44 ? O33 160 5278 B 1 
HETATM 8 O O34 160 . . . D 2 8.404 39.308 35.646 1 56.13 ? O34 160 5278 B 1 
HETATM 9 C C25 160 . . . D 2 9.85 39.504 37.89 1 60.02 ? C25 160 5278 B 1 
HETATM 10 C C22 160 . . . D 2 10.723 36.338 36.566 1 60.01 ? C22 160 5278 B 1 
HETATM 11 C C23 160 . . . D 2 10.337 35.012 36.566 1 61.73 ? C23 160 5278 B 1 
HETATM 12 N N17 160 . . . D 2 8.592 32.511 36.566 1 61.38 ? N17 160 5278 B 1 
HETATM 13 C C16 160 . . . D 2 8.933 31.503 35.585 1 58.98 ? C16 160 5278 B 1 
HETATM 14 C C15 160 . . . D 2 7.862 30.425 35.496 1 56.32 ? C15 160 5278 B 1 
HETATM 15 S S14 160 . . . D 2 8.426 29.024 34.507 1 52.75 ? S14 160 5278 B 1 
HETATM 16 S S13 160 . . . D 2 6.684 28.204 33.894 1 44.04 ? S13 160 5278 B 1 
HETATM 17 C C12 160 . . . D 2 6.728 28.595 32.13 1 38.69 ? C12 160 5278 B 1 
HETATM 18 C C8 160 . . . D 2 6.565 30.09 32.008 1 36.79 ? C8 160 5278 B 1 
HETATM 19 C C9 160 . . . D 2 7.647 30.899 31.692 1 39.82 ? C9 160 5278 B 1 
HETATM 20 C C10 160 . . . D 2 7.474 32.283 31.587 1 39.86 ? C10 160 5278 B 1 
HETATM 21 C C11 160 . . . D 2 6.233 32.867 31.813 1 32.2 ? C11 160 5278 B 1 
HETATM 22 C C7 160 . . . D 2 5.328 30.677 32.233 1 33.51 ? C7 160 5278 B 1 
HETATM 23 C C6 160 . . . D 2 5.169 32.05 32.141 1 30.76 ? C6 160 5278 B 1 
HETATM 24 S S5 160 . . . D 2 3.624 32.732 32.399 1 30.34 ? S5 160 5278 B 1 
HETATM 25 O O27 160 . . . D 2 3.764 34.108 32.931 1 27.56 ? O27 160 5278 B 1 
HETATM 26 O O28 160 . . . D 2 2.842 31.883 33.324 1 31.36 ? O28 160 5278 B 1 
HETATM 27 N N4 160 . . . D 2 2.846 32.833 30.891 1 26.72 ? N4 160 5278 B 1 
HETATM 28 C C3 160 . . . D 2 1.476 32.442 30.778 1 29.07 ? C3 160 5278 B 1 
HETATM 29 C C2 160 . . . D 2 1.465 31.337 29.758 1 29.43 ? C2 160 5278 B 1 
HETATM 30 O O26 160 . . . D 2 0.457 30.999 29.178 1 30.07 ? O26 160 5278 B 1 
HETATM 31 C C1 160 . . . D 2 2.76 30.65 29.471 1 27.38 ? C1 160 5278 B 1 
HETATM 32 C C29 160 . . . D 2 0.682 33.685 30.38 1 28.23 ? C29 160 5278 B 1 
HETATM 33 C C30 160 . . . D 2 0.154 34.39 31.613 1 24.61 ? C30 160 5278 B 1 
HETATM 34 O O31 160 . . . D 2 -0.045 33.759 32.621 1 22.02 ? O31 160 5278 B 1 
HETATM 35 O O32 160 . . . D 2 -0.12 35.693 31.637 1 24.64 ? O32 160 5278 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           35 
#