data_1NMT # _model_server_result.job_id aTdmA4pHe7Or4_h4bBrXhA _model_server_result.datetime_utc '2024-11-25 20:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":13}' # _entry.id 1NMT # _exptl.entry_id 1NMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NMT _cell.length_a 132 _cell.length_b 166.5 _cell.length_c 179.4 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1NMT _atom_sites.fract_transf_matrix[1][1] 0.007576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 3 3 GOL GOL . E 2 GOL A 1 4 4 GOL GOL . F 2 GOL A 1 7 7 GOL GOL . G 2 GOL A 1 8 8 GOL GOL . H 2 GOL A 1 9 9 GOL GOL . I 2 GOL A 1 13 13 GOL GOL . J 2 GOL A 1 15 15 GOL GOL . K 2 GOL A 1 16 16 GOL GOL . L 2 GOL A 1 18 18 GOL GOL . M 2 GOL B 1 1 1 GOL GOL . N 2 GOL B 1 2 2 GOL GOL . O 2 GOL B 1 11 11 GOL GOL . P 2 GOL B 1 12 12 GOL GOL . Q 2 GOL B 1 17 17 GOL GOL . R 2 GOL C 1 5 5 GOL GOL . S 2 GOL C 1 6 6 GOL GOL . T 2 GOL C 1 10 10 GOL GOL . U 2 GOL C 1 14 14 GOL GOL . V 3 HOH A 1 452 19 HOH HOH . V 3 HOH A 2 453 20 HOH HOH . V 3 HOH A 3 454 21 HOH HOH . V 3 HOH A 4 455 22 HOH HOH . V 3 HOH A 5 456 23 HOH HOH . V 3 HOH A 6 457 24 HOH HOH . V 3 HOH A 7 458 25 HOH HOH . V 3 HOH A 8 459 26 HOH HOH . V 3 HOH A 9 460 27 HOH HOH . V 3 HOH A 10 461 28 HOH HOH . V 3 HOH A 11 462 29 HOH HOH . V 3 HOH A 12 463 30 HOH HOH . V 3 HOH A 13 464 31 HOH HOH . V 3 HOH A 14 465 32 HOH HOH . V 3 HOH A 15 466 33 HOH HOH . V 3 HOH A 16 467 34 HOH HOH . V 3 HOH A 17 468 35 HOH HOH . V 3 HOH A 18 469 36 HOH HOH . V 3 HOH A 19 470 37 HOH HOH . V 3 HOH A 20 471 38 HOH HOH . V 3 HOH A 21 472 84 HOH HOH . V 3 HOH A 22 473 91 HOH HOH . V 3 HOH A 23 474 95 HOH HOH . V 3 HOH A 24 475 102 HOH HOH . V 3 HOH A 25 476 104 HOH HOH . V 3 HOH A 26 477 105 HOH HOH . V 3 HOH A 27 478 108 HOH HOH . V 3 HOH A 28 479 111 HOH HOH . V 3 HOH A 29 480 113 HOH HOH . V 3 HOH A 30 481 114 HOH HOH . V 3 HOH A 31 482 131 HOH HOH . V 3 HOH A 32 483 132 HOH HOH . V 3 HOH A 33 484 133 HOH HOH . V 3 HOH A 34 485 134 HOH HOH . V 3 HOH A 35 486 135 HOH HOH . V 3 HOH A 36 487 140 HOH HOH . V 3 HOH A 37 488 145 HOH HOH . V 3 HOH A 38 489 152 HOH HOH . V 3 HOH A 39 490 153 HOH HOH . V 3 HOH A 40 491 154 HOH HOH . V 3 HOH A 41 492 155 HOH HOH . V 3 HOH A 42 493 156 HOH HOH . V 3 HOH A 43 494 166 HOH HOH . V 3 HOH A 44 495 167 HOH HOH . V 3 HOH A 45 496 174 HOH HOH . V 3 HOH A 46 497 181 HOH HOH . V 3 HOH A 47 498 182 HOH HOH . V 3 HOH A 48 499 184 HOH HOH . V 3 HOH A 49 500 185 HOH HOH . V 3 HOH A 50 501 197 HOH HOH . V 3 HOH A 51 502 202 HOH HOH . V 3 HOH A 52 503 203 HOH HOH . V 3 HOH A 53 504 210 HOH HOH . V 3 HOH A 54 505 211 HOH HOH . V 3 HOH A 55 506 212 HOH HOH . V 3 HOH A 56 507 213 HOH HOH . V 3 HOH A 57 508 214 HOH HOH . V 3 HOH A 58 509 227 HOH HOH . V 3 HOH A 59 510 231 HOH HOH . V 3 HOH A 60 511 237 HOH HOH . V 3 HOH A 61 512 239 HOH HOH . V 3 HOH A 62 513 240 HOH HOH . V 3 HOH A 63 514 241 HOH HOH . V 3 HOH A 64 515 242 HOH HOH . V 3 HOH A 65 516 244 HOH HOH . V 3 HOH A 66 517 245 HOH HOH . V 3 HOH A 67 518 246 HOH HOH . V 3 HOH A 68 519 248 HOH HOH . V 3 HOH A 69 520 249 HOH HOH . V 3 HOH A 70 521 250 HOH HOH . V 3 HOH A 71 522 251 HOH HOH . V 3 HOH A 72 523 253 HOH HOH . V 3 HOH A 73 524 255 HOH HOH . V 3 HOH A 74 525 258 HOH HOH . V 3 HOH A 75 526 259 HOH HOH . V 3 HOH A 76 527 260 HOH HOH . V 3 HOH A 77 528 261 HOH HOH . V 3 HOH A 78 529 262 HOH HOH . V 3 HOH A 79 530 263 HOH HOH . V 3 HOH A 80 531 265 HOH HOH . V 3 HOH A 81 532 266 HOH HOH . V 3 HOH A 82 533 269 HOH HOH . V 3 HOH A 83 534 270 HOH HOH . V 3 HOH A 84 535 272 HOH HOH . V 3 HOH A 85 536 274 HOH HOH . V 3 HOH A 86 537 275 HOH HOH . V 3 HOH A 87 538 277 HOH HOH . V 3 HOH A 88 539 278 HOH HOH . V 3 HOH A 89 540 279 HOH HOH . V 3 HOH A 90 541 281 HOH HOH . V 3 HOH A 91 542 282 HOH HOH . V 3 HOH A 92 543 285 HOH HOH . V 3 HOH A 93 544 286 HOH HOH . V 3 HOH A 94 545 287 HOH HOH . V 3 HOH A 95 546 291 HOH HOH . V 3 HOH A 96 547 293 HOH HOH . V 3 HOH A 97 548 296 HOH HOH . V 3 HOH A 98 549 297 HOH HOH . V 3 HOH A 99 550 299 HOH HOH . V 3 HOH A 100 551 302 HOH HOH . V 3 HOH A 101 552 303 HOH HOH . V 3 HOH A 102 553 305 HOH HOH . V 3 HOH A 103 554 306 HOH HOH . V 3 HOH A 104 555 307 HOH HOH . V 3 HOH A 105 556 309 HOH HOH . W 3 HOH B 1 452 39 HOH HOH . W 3 HOH B 2 453 40 HOH HOH . W 3 HOH B 3 454 41 HOH HOH . W 3 HOH B 4 455 42 HOH HOH . W 3 HOH B 5 456 43 HOH HOH . W 3 HOH B 6 457 44 HOH HOH . W 3 HOH B 7 458 45 HOH HOH . W 3 HOH B 8 459 46 HOH HOH . W 3 HOH B 9 460 47 HOH HOH . W 3 HOH B 10 461 48 HOH HOH . W 3 HOH B 11 462 49 HOH HOH . W 3 HOH B 12 463 50 HOH HOH . W 3 HOH B 13 464 51 HOH HOH . W 3 HOH B 14 465 52 HOH HOH . W 3 HOH B 15 466 53 HOH HOH . W 3 HOH B 16 467 54 HOH HOH . W 3 HOH B 17 468 55 HOH HOH . W 3 HOH B 18 469 56 HOH HOH . W 3 HOH B 19 470 57 HOH HOH . W 3 HOH B 20 471 58 HOH HOH . W 3 HOH B 21 472 59 HOH HOH . W 3 HOH B 22 473 81 HOH HOH . W 3 HOH B 23 474 82 HOH HOH . W 3 HOH B 24 475 83 HOH HOH . W 3 HOH B 25 476 85 HOH HOH . W 3 HOH B 26 477 86 HOH HOH . W 3 HOH B 27 478 87 HOH HOH . W 3 HOH B 28 479 88 HOH HOH . W 3 HOH B 29 480 89 HOH HOH . W 3 HOH B 30 481 90 HOH HOH . W 3 HOH B 31 482 92 HOH HOH . W 3 HOH B 32 483 93 HOH HOH . W 3 HOH B 33 484 94 HOH HOH . W 3 HOH B 34 485 96 HOH HOH . W 3 HOH B 35 486 97 HOH HOH . W 3 HOH B 36 487 98 HOH HOH . W 3 HOH B 37 488 99 HOH HOH . W 3 HOH B 38 489 100 HOH HOH . W 3 HOH B 39 490 101 HOH HOH . W 3 HOH B 40 491 103 HOH HOH . W 3 HOH B 41 492 106 HOH HOH . W 3 HOH B 42 493 107 HOH HOH . W 3 HOH B 43 494 109 HOH HOH . W 3 HOH B 44 495 112 HOH HOH . W 3 HOH B 45 496 115 HOH HOH . W 3 HOH B 46 497 116 HOH HOH . W 3 HOH B 47 498 117 HOH HOH . W 3 HOH B 48 499 118 HOH HOH . W 3 HOH B 49 500 119 HOH HOH . W 3 HOH B 50 501 120 HOH HOH . W 3 HOH B 51 502 121 HOH HOH . W 3 HOH B 52 503 122 HOH HOH . W 3 HOH B 53 504 123 HOH HOH . W 3 HOH B 54 505 124 HOH HOH . W 3 HOH B 55 506 125 HOH HOH . W 3 HOH B 56 507 126 HOH HOH . W 3 HOH B 57 508 127 HOH HOH . W 3 HOH B 58 509 128 HOH HOH . W 3 HOH B 59 510 129 HOH HOH . W 3 HOH B 60 511 130 HOH HOH . W 3 HOH B 61 512 136 HOH HOH . W 3 HOH B 62 513 137 HOH HOH . W 3 HOH B 63 514 138 HOH HOH . W 3 HOH B 64 515 139 HOH HOH . W 3 HOH B 65 516 147 HOH HOH . W 3 HOH B 66 517 148 HOH HOH . W 3 HOH B 67 518 149 HOH HOH . W 3 HOH B 68 519 150 HOH HOH . W 3 HOH B 69 520 151 HOH HOH . W 3 HOH B 70 521 157 HOH HOH . W 3 HOH B 71 522 158 HOH HOH . W 3 HOH B 72 523 159 HOH HOH . W 3 HOH B 73 524 160 HOH HOH . W 3 HOH B 74 525 161 HOH HOH . W 3 HOH B 75 526 162 HOH HOH . W 3 HOH B 76 527 163 HOH HOH . W 3 HOH B 77 528 164 HOH HOH . W 3 HOH B 78 529 165 HOH HOH . W 3 HOH B 79 530 170 HOH HOH . W 3 HOH B 80 531 171 HOH HOH . W 3 HOH B 81 532 172 HOH HOH . W 3 HOH B 82 533 175 HOH HOH . W 3 HOH B 83 534 176 HOH HOH . W 3 HOH B 84 535 177 HOH HOH . W 3 HOH B 85 536 178 HOH HOH . W 3 HOH B 86 537 179 HOH HOH . W 3 HOH B 87 538 180 HOH HOH . W 3 HOH B 88 539 183 HOH HOH . W 3 HOH B 89 540 186 HOH HOH . W 3 HOH B 90 541 187 HOH HOH . W 3 HOH B 91 542 188 HOH HOH . W 3 HOH B 92 543 189 HOH HOH . W 3 HOH B 93 544 190 HOH HOH . W 3 HOH B 94 545 191 HOH HOH . W 3 HOH B 95 546 192 HOH HOH . W 3 HOH B 96 547 193 HOH HOH . W 3 HOH B 97 548 194 HOH HOH . W 3 HOH B 98 549 195 HOH HOH . W 3 HOH B 99 550 196 HOH HOH . W 3 HOH B 100 551 198 HOH HOH . W 3 HOH B 101 552 201 HOH HOH . W 3 HOH B 102 553 204 HOH HOH . W 3 HOH B 103 554 205 HOH HOH . W 3 HOH B 104 555 206 HOH HOH . W 3 HOH B 105 556 207 HOH HOH . W 3 HOH B 106 557 208 HOH HOH . W 3 HOH B 107 558 209 HOH HOH . W 3 HOH B 108 559 215 HOH HOH . W 3 HOH B 109 560 216 HOH HOH . W 3 HOH B 110 561 217 HOH HOH . W 3 HOH B 111 562 218 HOH HOH . W 3 HOH B 112 563 219 HOH HOH . W 3 HOH B 113 564 220 HOH HOH . W 3 HOH B 114 565 222 HOH HOH . W 3 HOH B 115 566 223 HOH HOH . W 3 HOH B 116 567 224 HOH HOH . W 3 HOH B 117 568 225 HOH HOH . W 3 HOH B 118 569 226 HOH HOH . W 3 HOH B 119 570 228 HOH HOH . W 3 HOH B 120 571 232 HOH HOH . W 3 HOH B 121 572 233 HOH HOH . W 3 HOH B 122 573 234 HOH HOH . W 3 HOH B 123 574 236 HOH HOH . W 3 HOH B 124 575 238 HOH HOH . W 3 HOH B 125 576 243 HOH HOH . W 3 HOH B 126 577 247 HOH HOH . W 3 HOH B 127 578 252 HOH HOH . W 3 HOH B 128 579 254 HOH HOH . W 3 HOH B 129 580 256 HOH HOH . W 3 HOH B 130 581 257 HOH HOH . W 3 HOH B 131 582 264 HOH HOH . W 3 HOH B 132 583 267 HOH HOH . W 3 HOH B 133 584 268 HOH HOH . W 3 HOH B 134 585 271 HOH HOH . W 3 HOH B 135 586 273 HOH HOH . W 3 HOH B 136 587 276 HOH HOH . W 3 HOH B 137 588 280 HOH HOH . W 3 HOH B 138 589 283 HOH HOH . W 3 HOH B 139 590 284 HOH HOH . W 3 HOH B 140 591 288 HOH HOH . W 3 HOH B 141 592 289 HOH HOH . W 3 HOH B 142 593 290 HOH HOH . W 3 HOH B 143 594 292 HOH HOH . W 3 HOH B 144 595 294 HOH HOH . W 3 HOH B 145 596 295 HOH HOH . W 3 HOH B 146 597 298 HOH HOH . W 3 HOH B 147 598 300 HOH HOH . W 3 HOH B 148 599 301 HOH HOH . W 3 HOH B 149 600 304 HOH HOH . W 3 HOH B 150 601 308 HOH HOH . X 3 HOH C 1 452 60 HOH HOH . X 3 HOH C 2 453 61 HOH HOH . X 3 HOH C 3 454 62 HOH HOH . X 3 HOH C 4 455 63 HOH HOH . X 3 HOH C 5 456 64 HOH HOH . X 3 HOH C 6 457 65 HOH HOH . X 3 HOH C 7 458 66 HOH HOH . X 3 HOH C 8 459 67 HOH HOH . X 3 HOH C 9 460 68 HOH HOH . X 3 HOH C 10 461 69 HOH HOH . X 3 HOH C 11 462 70 HOH HOH . X 3 HOH C 12 463 71 HOH HOH . X 3 HOH C 13 464 72 HOH HOH . X 3 HOH C 14 465 73 HOH HOH . X 3 HOH C 15 466 74 HOH HOH . X 3 HOH C 16 467 75 HOH HOH . X 3 HOH C 17 468 76 HOH HOH . X 3 HOH C 18 469 77 HOH HOH . X 3 HOH C 19 470 78 HOH HOH . X 3 HOH C 20 471 79 HOH HOH . X 3 HOH C 21 472 80 HOH HOH . X 3 HOH C 22 473 110 HOH HOH . X 3 HOH C 23 474 141 HOH HOH . X 3 HOH C 24 475 142 HOH HOH . X 3 HOH C 25 476 143 HOH HOH . X 3 HOH C 26 477 144 HOH HOH . X 3 HOH C 27 478 146 HOH HOH . X 3 HOH C 28 479 168 HOH HOH . X 3 HOH C 29 480 169 HOH HOH . X 3 HOH C 30 481 173 HOH HOH . X 3 HOH C 31 482 199 HOH HOH . X 3 HOH C 32 483 200 HOH HOH . X 3 HOH C 33 484 221 HOH HOH . X 3 HOH C 34 485 229 HOH HOH . X 3 HOH C 35 486 230 HOH HOH . X 3 HOH C 36 487 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 15.154 39.485 20.727 1 70.63 ? C1 GOL 13 A 1 HETATM 2 O O1 GOL . . . I 2 14.174 40.009 21.616 1 67.02 ? O1 GOL 13 A 1 HETATM 3 C C2 GOL . . . I 2 14.804 38.165 19.991 1 65.54 ? C2 GOL 13 A 1 HETATM 4 O O2 GOL . . . I 2 13.718 38.378 19.082 1 67.26 ? O2 GOL 13 A 1 HETATM 5 C C3 GOL . . . I 2 14.504 36.956 20.899 1 61.99 ? C3 GOL 13 A 1 HETATM 6 O O3 GOL . . . I 2 13.408 37.077 21.803 1 67.27 ? O3 GOL 13 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #