data_1NN2
#
_model_server_result.job_id            wYPNyl0cXxNygVFdai--VQ 
_model_server_result.datetime_utc      '2024-10-18 18:17:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nn2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1}' 
#
_entry.id    1NN2 
#
_exptl.entry_id    1NN2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NN2 
_cell.length_a            139.6 
_cell.length_b            139.6 
_cell.length_c            191 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NN2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 139.6 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 139.6 0 0 
4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 139.6 139.6 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
5 ? 3 5 4 NAG MAN C1 O1 . O4 HO4 . sing 
6 ? 3 6 5 NGK NAG C1 O1 . O4 HO4 . sing 
7 ? 3 7 1 FUL NAG C1 O1 . O6 HO6 . sing 
8 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
9 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
10 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
11 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 
12 ? 4 6 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG ? 86 NAG 
2 n B NAG 2 B 2 NAG ? 86 NAG 
3 n C NAG 1 C 1 NAG ? 146 NAG 
3 n C NAG 2 C 2 NAG ? 146 NAG 
3 n C BMA 3 C 3 BMA ? 146 MAN 
3 n C MAN 4 C 4 MAN ? 146 MAN 
3 n C NAG 5 C 5 NAG ? 146 NAG 
3 n C NGK 6 C 6 NGK ? 146 NGL 
3 n C FUL 7 C 7 FUL ? 146 FUC 
4 n D NAG 1 D 1 NAG ? 200 NAG 
4 n D NAG 2 D 2 NAG ? 200 NAG 
4 n D BMA 3 D 3 BMA ? 200 MAN 
4 n D MAN 4 D 4 MAN ? 200 MAN 
4 n D MAN 5 D 5 MAN ? 200 MAN 
4 n D MAN 6 D 6 MAN ? 200 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 336 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf3 A SG CYS 94 A CYS 175 1_555 A SG CYS 112 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 A SG CYS 102 A CYS 183 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf5 A SG CYS 151 A CYS 232 1_555 A SG CYS 156 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 A SG CYS 197 A CYS 278 1_555 A SG CYS 210 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf7 A SG CYS 199 A CYS 280 1_555 A SG CYS 208 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf8 A SG CYS 237 A CYS 318 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf9 A SG CYS 340 A CYS 421 1_555 A SG CYS 366 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 5 A ASN 86 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale3 A ND2 ASN 119 A ASN 200 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? 
covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? 
covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale9 C O4 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale10 C O4 NAG . C NAG 5 1_555 C C1 NGK . C NGK 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
covale ? covale13 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? 
covale ? covale14 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale15 D O2 MAN . D MAN 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 G CA CA . A CA 1 1_555 A O ASP 212 A ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 G CA CA . A CA 1 1_555 A O GLY 216 A GLY 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? 
metalc ? metalc3 G CA CA . A CA 1 1_555 A OD2 ASP 243 A ASP 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.364 ? 
metalc ? metalc4 G CA CA . A CA 1 1_555 A O GLY 264 A GLY 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? 
metalc ? metalc5 G CA CA . A CA 1 1_555 A O GLN 266 A GLN 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1NN2 
_atom_sites.fract_transf_matrix[1][1]    0.007163 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG A 1 485 234 NAG NAG A 
F 5 NAG A 1 486 234 NAG NAG B 
G 6 CA A 1 1 1 CA CA . 
H 7 HOH A 1 487 1 HOH HOH . 
H 7 HOH A 2 488 2 HOH HOH . 
H 7 HOH A 3 489 3 HOH HOH . 
H 7 HOH A 4 490 4 HOH HOH . 
H 7 HOH A 5 491 5 HOH HOH . 
H 7 HOH A 6 492 6 HOH HOH . 
H 7 HOH A 7 493 7 HOH HOH . 
H 7 HOH A 8 494 8 HOH HOH . 
H 7 HOH A 9 495 9 HOH HOH . 
H 7 HOH A 10 496 10 HOH HOH . 
H 7 HOH A 11 497 11 HOH HOH . 
H 7 HOH A 12 498 12 HOH HOH . 
H 7 HOH A 13 499 13 HOH HOH . 
H 7 HOH A 14 500 14 HOH HOH . 
H 7 HOH A 15 501 15 HOH HOH . 
H 7 HOH A 16 502 16 HOH HOH . 
H 7 HOH A 17 503 17 HOH HOH . 
H 7 HOH A 18 504 18 HOH HOH . 
H 7 HOH A 19 505 19 HOH HOH . 
H 7 HOH A 20 506 20 HOH HOH . 
H 7 HOH A 21 507 21 HOH HOH . 
H 7 HOH A 22 508 22 HOH HOH . 
H 7 HOH A 23 509 23 HOH HOH . 
H 7 HOH A 24 510 24 HOH HOH . 
H 7 HOH A 25 511 25 HOH HOH . 
H 7 HOH A 26 512 26 HOH HOH . 
H 7 HOH A 27 513 27 HOH HOH . 
H 7 HOH A 28 514 28 HOH HOH . 
H 7 HOH A 29 515 29 HOH HOH . 
H 7 HOH A 30 516 30 HOH HOH . 
H 7 HOH A 31 517 31 HOH HOH . 
H 7 HOH A 32 518 32 HOH HOH . 
H 7 HOH A 33 519 33 HOH HOH . 
H 7 HOH A 34 520 34 HOH HOH . 
H 7 HOH A 35 521 35 HOH HOH . 
H 7 HOH A 36 522 36 HOH HOH . 
H 7 HOH A 37 523 37 HOH HOH . 
H 7 HOH A 38 524 38 HOH HOH . 
H 7 HOH A 39 525 39 HOH HOH . 
H 7 HOH A 40 526 40 HOH HOH . 
H 7 HOH A 41 527 41 HOH HOH . 
H 7 HOH A 42 528 42 HOH HOH . 
H 7 HOH A 43 529 43 HOH HOH . 
H 7 HOH A 44 530 44 HOH HOH . 
H 7 HOH A 45 531 45 HOH HOH . 
H 7 HOH A 46 532 46 HOH HOH . 
H 7 HOH A 47 533 47 HOH HOH . 
H 7 HOH A 48 534 48 HOH HOH . 
H 7 HOH A 49 535 49 HOH HOH . 
H 7 HOH A 50 536 50 HOH HOH . 
H 7 HOH A 51 537 51 HOH HOH . 
H 7 HOH A 52 538 52 HOH HOH . 
H 7 HOH A 53 539 53 HOH HOH . 
H 7 HOH A 54 540 54 HOH HOH . 
H 7 HOH A 55 541 55 HOH HOH . 
H 7 HOH A 56 542 56 HOH HOH . 
H 7 HOH A 57 543 57 HOH HOH . 
H 7 HOH A 58 544 58 HOH HOH . 
H 7 HOH A 59 545 59 HOH HOH . 
H 7 HOH A 60 546 60 HOH HOH . 
H 7 HOH A 61 547 61 HOH HOH . 
H 7 HOH A 62 548 62 HOH HOH . 
H 7 HOH A 63 549 63 HOH HOH . 
H 7 HOH A 64 550 64 HOH HOH . 
H 7 HOH A 65 551 65 HOH HOH . 
H 7 HOH A 66 552 66 HOH HOH . 
H 7 HOH A 67 553 67 HOH HOH . 
H 7 HOH A 68 554 68 HOH HOH . 
H 7 HOH A 69 555 69 HOH HOH . 
H 7 HOH A 70 556 70 HOH HOH . 
H 7 HOH A 71 557 71 HOH HOH . 
H 7 HOH A 72 558 72 HOH HOH . 
H 7 HOH A 73 559 73 HOH HOH . 
H 7 HOH A 74 560 74 HOH HOH . 
H 7 HOH A 75 561 75 HOH HOH . 
H 7 HOH A 76 562 76 HOH HOH . 
H 7 HOH A 77 563 77 HOH HOH . 
H 7 HOH A 78 564 78 HOH HOH . 
H 7 HOH A 79 565 79 HOH HOH . 
H 7 HOH A 80 566 80 HOH HOH . 
H 7 HOH A 81 567 81 HOH HOH . 
H 7 HOH A 82 568 82 HOH HOH . 
H 7 HOH A 83 569 83 HOH HOH . 
H 7 HOH A 84 570 84 HOH HOH . 
H 7 HOH A 85 571 85 HOH HOH . 
H 7 HOH A 86 572 86 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               93.421 
_atom_site.Cartn_y               103.933 
_atom_site.Cartn_z               63.67 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.56 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#