data_1NN6 # _model_server_result.job_id TKR1VikAxbj58izU35zveA _model_server_result.datetime_utc '2024-12-26 17:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 1NN6 # _exptl.entry_id 1NN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NN6 _cell.length_a 50.688 _cell.length_b 55.639 _cell.length_c 88.686 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG S 301 NAG 2 n B NAG 2 B 2 NAG S 303 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 45 1_555 A SG CYS 48 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 125 A CYS 138 1_555 A SG CYS 190 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 156 A CYS 169 1_555 A SG CYS 169 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? covale ? covale1 A ND2 ASN 61 A ASN 74 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale2 A ND2 ASN 84 A ASN 97 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1NN6 _atom_sites.fract_transf_matrix[1][1] 0.019729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 302 302 NAG NAG . D 4 HOH A 1 304 1 HOH HOH . D 4 HOH A 2 305 2 HOH HOH . D 4 HOH A 3 306 3 HOH HOH . D 4 HOH A 4 307 4 HOH HOH . D 4 HOH A 5 308 5 HOH HOH . D 4 HOH A 6 309 6 HOH HOH . D 4 HOH A 7 310 7 HOH HOH . D 4 HOH A 8 311 8 HOH HOH . D 4 HOH A 9 312 9 HOH HOH . D 4 HOH A 10 313 10 HOH HOH . D 4 HOH A 11 314 11 HOH HOH . D 4 HOH A 12 315 12 HOH HOH . D 4 HOH A 13 316 13 HOH HOH . D 4 HOH A 14 317 14 HOH HOH . D 4 HOH A 15 318 15 HOH HOH . D 4 HOH A 16 319 16 HOH HOH . D 4 HOH A 17 320 17 HOH HOH . D 4 HOH A 18 321 18 HOH HOH . D 4 HOH A 19 322 19 HOH HOH . D 4 HOH A 20 323 20 HOH HOH . D 4 HOH A 21 324 21 HOH HOH . D 4 HOH A 22 325 22 HOH HOH . D 4 HOH A 23 326 23 HOH HOH . D 4 HOH A 24 327 24 HOH HOH . D 4 HOH A 25 328 25 HOH HOH . D 4 HOH A 26 329 26 HOH HOH . D 4 HOH A 27 330 27 HOH HOH . D 4 HOH A 28 331 28 HOH HOH . D 4 HOH A 29 332 29 HOH HOH . D 4 HOH A 30 333 30 HOH HOH . D 4 HOH A 31 334 31 HOH HOH . D 4 HOH A 32 335 32 HOH HOH . D 4 HOH A 33 336 33 HOH HOH . D 4 HOH A 34 337 34 HOH HOH . D 4 HOH A 35 338 35 HOH HOH . D 4 HOH A 36 339 36 HOH HOH . D 4 HOH A 37 340 37 HOH HOH . D 4 HOH A 38 341 38 HOH HOH . D 4 HOH A 39 342 39 HOH HOH . D 4 HOH A 40 343 40 HOH HOH . D 4 HOH A 41 344 41 HOH HOH . D 4 HOH A 42 345 42 HOH HOH . D 4 HOH A 43 346 43 HOH HOH . D 4 HOH A 44 347 44 HOH HOH . D 4 HOH A 45 348 45 HOH HOH . D 4 HOH A 46 349 46 HOH HOH . D 4 HOH A 47 350 47 HOH HOH . D 4 HOH A 48 351 48 HOH HOH . D 4 HOH A 49 352 49 HOH HOH . D 4 HOH A 50 353 50 HOH HOH . D 4 HOH A 51 354 51 HOH HOH . D 4 HOH A 52 355 52 HOH HOH . D 4 HOH A 53 356 53 HOH HOH . D 4 HOH A 54 357 54 HOH HOH . D 4 HOH A 55 358 55 HOH HOH . D 4 HOH A 56 359 56 HOH HOH . D 4 HOH A 57 360 57 HOH HOH . D 4 HOH A 58 361 58 HOH HOH . D 4 HOH A 59 362 59 HOH HOH . D 4 HOH A 60 363 60 HOH HOH . D 4 HOH A 61 364 61 HOH HOH . D 4 HOH A 62 365 62 HOH HOH . D 4 HOH A 63 366 63 HOH HOH . D 4 HOH A 64 367 64 HOH HOH . D 4 HOH A 65 368 65 HOH HOH . D 4 HOH A 66 369 66 HOH HOH . D 4 HOH A 67 370 67 HOH HOH . D 4 HOH A 68 371 68 HOH HOH . D 4 HOH A 69 372 69 HOH HOH . D 4 HOH A 70 373 70 HOH HOH . D 4 HOH A 71 374 71 HOH HOH . D 4 HOH A 72 375 72 HOH HOH . D 4 HOH A 73 376 73 HOH HOH . D 4 HOH A 74 377 74 HOH HOH . D 4 HOH A 75 378 75 HOH HOH . D 4 HOH A 76 379 76 HOH HOH . D 4 HOH A 77 380 77 HOH HOH . D 4 HOH A 78 381 78 HOH HOH . D 4 HOH A 79 382 79 HOH HOH . D 4 HOH A 80 383 80 HOH HOH . D 4 HOH A 81 384 81 HOH HOH . D 4 HOH A 82 385 82 HOH HOH . D 4 HOH A 83 386 83 HOH HOH . D 4 HOH A 84 387 84 HOH HOH . D 4 HOH A 85 388 85 HOH HOH . D 4 HOH A 86 389 86 HOH HOH . D 4 HOH A 87 390 87 HOH HOH . D 4 HOH A 88 391 88 HOH HOH . D 4 HOH A 89 392 89 HOH HOH . D 4 HOH A 90 393 90 HOH HOH . D 4 HOH A 91 394 91 HOH HOH . D 4 HOH A 92 395 92 HOH HOH . D 4 HOH A 93 396 93 HOH HOH . D 4 HOH A 94 397 94 HOH HOH . D 4 HOH A 95 398 95 HOH HOH . D 4 HOH A 96 399 96 HOH HOH . D 4 HOH A 97 400 97 HOH HOH . D 4 HOH A 98 401 98 HOH HOH . D 4 HOH A 99 402 99 HOH HOH . D 4 HOH A 100 403 100 HOH HOH . D 4 HOH A 101 404 101 HOH HOH . D 4 HOH A 102 405 102 HOH HOH . D 4 HOH A 103 406 103 HOH HOH . D 4 HOH A 104 407 104 HOH HOH . D 4 HOH A 105 408 105 HOH HOH . D 4 HOH A 106 409 106 HOH HOH . D 4 HOH A 107 410 107 HOH HOH . D 4 HOH A 108 411 108 HOH HOH . D 4 HOH A 109 412 109 HOH HOH . D 4 HOH A 110 413 110 HOH HOH . D 4 HOH A 111 414 111 HOH HOH . D 4 HOH A 112 415 112 HOH HOH . D 4 HOH A 113 416 113 HOH HOH . D 4 HOH A 114 417 114 HOH HOH . D 4 HOH A 115 418 115 HOH HOH . D 4 HOH A 116 419 116 HOH HOH . D 4 HOH A 117 420 117 HOH HOH . D 4 HOH A 118 421 118 HOH HOH . D 4 HOH A 119 422 119 HOH HOH . D 4 HOH A 120 423 120 HOH HOH . D 4 HOH A 121 424 121 HOH HOH . D 4 HOH A 122 425 122 HOH HOH . D 4 HOH A 123 426 123 HOH HOH . D 4 HOH A 124 427 124 HOH HOH . D 4 HOH A 125 428 125 HOH HOH . D 4 HOH A 126 429 126 HOH HOH . D 4 HOH A 127 430 127 HOH HOH . D 4 HOH A 128 431 128 HOH HOH . D 4 HOH A 129 432 129 HOH HOH . D 4 HOH A 130 433 130 HOH HOH . D 4 HOH A 131 434 131 HOH HOH . D 4 HOH A 132 435 132 HOH HOH . D 4 HOH A 133 436 133 HOH HOH . D 4 HOH A 134 437 134 HOH HOH . D 4 HOH A 135 438 135 HOH HOH . D 4 HOH A 136 439 136 HOH HOH . D 4 HOH A 137 440 137 HOH HOH . D 4 HOH A 138 441 138 HOH HOH . D 4 HOH A 139 442 139 HOH HOH . D 4 HOH A 140 443 140 HOH HOH . D 4 HOH A 141 444 141 HOH HOH . D 4 HOH A 142 445 142 HOH HOH . D 4 HOH A 143 446 143 HOH HOH . D 4 HOH A 144 447 144 HOH HOH . D 4 HOH A 145 448 145 HOH HOH . D 4 HOH A 146 449 146 HOH HOH . D 4 HOH A 147 450 147 HOH HOH . D 4 HOH A 148 451 148 HOH HOH . D 4 HOH A 149 452 149 HOH HOH . D 4 HOH A 150 453 150 HOH HOH . D 4 HOH A 151 454 151 HOH HOH . D 4 HOH A 152 455 152 HOH HOH . D 4 HOH A 153 456 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 34.251 14.704 15.789 1 57.57 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . C 3 34.595 15.44 14.51 1 63.4 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . C 3 36.106 15.658 14.278 1 64.12 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . C 3 36.887 15.891 15.577 1 64.02 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . C 3 36.302 14.954 16.639 1 62.78 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . C 3 36.931 14.931 18.023 1 63.65 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . C 3 34.094 15.174 12.189 1 67.81 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . C 3 35.261 14.702 11.375 1 69.61 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . C 3 34.015 14.695 13.422 1 66.02 ? N2 NAG 302 A 1 HETATM 10 O O3 NAG . . . C 3 36.341 16.749 13.394 1 66.27 ? O3 NAG 302 A 1 HETATM 11 O O4 NAG . . . C 3 38.265 15.658 15.341 1 62.47 ? O4 NAG 302 A 1 HETATM 12 O O5 NAG . . . C 3 34.97 15.329 16.812 1 61.13 ? O5 NAG 302 A 1 HETATM 13 O O6 NAG . . . C 3 37.131 13.573 18.37 1 63.72 ? O6 NAG 302 A 1 HETATM 14 O O7 NAG . . . C 3 33.274 15.969 11.732 1 68.77 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #