data_1NNW # _model_server_result.job_id UjgqEsebsHqsMAIVhG-raw _model_server_result.datetime_utc '2024-11-25 10:26:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 1NNW # _exptl.entry_id 1NNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.7 _cell.angle_beta 81.64 _cell.angle_gamma 81.77 _cell.entry_id 1NNW _cell.length_a 50.14 _cell.length_b 50.842 _cell.length_c 64.403 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 50.14 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 79 A MET 79 1_555 C PT PT . A PT 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A O LYS 166 A LYS 166 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A O TYR 168 A TYR 168 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A SD MET 183 A MET 183 1_555 D PT PT . A PT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 A SD MET 183 A MET 183 1_455 G PT PT . B PT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc6 A O TYR 186 A TYR 186 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 B SD MET 79 B MET 79 1_555 F PT PT . B PT 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 B O LYS 166 B LYS 166 1_555 H NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc9 B O TYR 168 B TYR 168 1_555 H NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc10 B SD MET 183 B MET 183 1_555 G PT PT . B PT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc11 B O TYR 186 B TYR 186 1_555 H NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NNW _atom_sites.fract_transf_matrix[1][1] 0.019944 _atom_sites.fract_transf_matrix[1][2] -0.002885 _atom_sites.fract_transf_matrix[1][3] -0.00268 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019873 _atom_sites.fract_transf_matrix[2][3] -0.001812 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PT A 1 301 301 PT PT . D 2 PT A 1 302 302 PT PT . E 3 NA A 1 303 303 NA NA . F 2 PT B 1 301 301 PT PT . G 2 PT B 1 302 302 PT PT . H 3 NA B 1 303 303 NA NA . I 4 HOH A 1 304 1 HOH HOH . I 4 HOH A 2 305 7 HOH HOH . I 4 HOH A 3 306 8 HOH HOH . I 4 HOH A 4 307 10 HOH HOH . I 4 HOH A 5 308 11 HOH HOH . I 4 HOH A 6 309 12 HOH HOH . I 4 HOH A 7 310 14 HOH HOH . I 4 HOH A 8 311 15 HOH HOH . I 4 HOH A 9 312 17 HOH HOH . I 4 HOH A 10 313 19 HOH HOH . I 4 HOH A 11 314 21 HOH HOH . I 4 HOH A 12 315 27 HOH HOH . I 4 HOH A 13 316 34 HOH HOH . I 4 HOH A 14 317 36 HOH HOH . I 4 HOH A 15 318 39 HOH HOH . I 4 HOH A 16 319 41 HOH HOH . I 4 HOH A 17 320 42 HOH HOH . I 4 HOH A 18 321 43 HOH HOH . I 4 HOH A 19 322 44 HOH HOH . I 4 HOH A 20 323 45 HOH HOH . I 4 HOH A 21 324 46 HOH HOH . I 4 HOH A 22 325 50 HOH HOH . I 4 HOH A 23 326 51 HOH HOH . I 4 HOH A 24 327 53 HOH HOH . I 4 HOH A 25 328 56 HOH HOH . I 4 HOH A 26 329 57 HOH HOH . I 4 HOH A 27 330 58 HOH HOH . I 4 HOH A 28 331 61 HOH HOH . I 4 HOH A 29 332 63 HOH HOH . I 4 HOH A 30 333 66 HOH HOH . I 4 HOH A 31 334 67 HOH HOH . I 4 HOH A 32 335 70 HOH HOH . I 4 HOH A 33 336 71 HOH HOH . I 4 HOH A 34 337 72 HOH HOH . I 4 HOH A 35 338 73 HOH HOH . I 4 HOH A 36 339 74 HOH HOH . I 4 HOH A 37 340 75 HOH HOH . I 4 HOH A 38 341 76 HOH HOH . I 4 HOH A 39 342 77 HOH HOH . I 4 HOH A 40 343 78 HOH HOH . I 4 HOH A 41 344 79 HOH HOH . I 4 HOH A 42 345 81 HOH HOH . I 4 HOH A 43 346 82 HOH HOH . I 4 HOH A 44 347 83 HOH HOH . I 4 HOH A 45 348 84 HOH HOH . I 4 HOH A 46 349 85 HOH HOH . I 4 HOH A 47 350 86 HOH HOH . I 4 HOH A 48 351 87 HOH HOH . I 4 HOH A 49 352 88 HOH HOH . I 4 HOH A 50 353 93 HOH HOH . I 4 HOH A 51 354 95 HOH HOH . I 4 HOH A 52 355 100 HOH HOH . I 4 HOH A 53 356 105 HOH HOH . I 4 HOH A 54 357 106 HOH HOH . I 4 HOH A 55 358 107 HOH HOH . J 4 HOH B 1 304 2 HOH HOH . J 4 HOH B 2 305 3 HOH HOH . J 4 HOH B 3 306 4 HOH HOH . J 4 HOH B 4 307 5 HOH HOH . J 4 HOH B 5 308 6 HOH HOH . J 4 HOH B 6 309 9 HOH HOH . J 4 HOH B 7 310 13 HOH HOH . J 4 HOH B 8 311 16 HOH HOH . J 4 HOH B 9 312 18 HOH HOH . J 4 HOH B 10 313 20 HOH HOH . J 4 HOH B 11 314 22 HOH HOH . J 4 HOH B 12 315 23 HOH HOH . J 4 HOH B 13 316 24 HOH HOH . J 4 HOH B 14 317 25 HOH HOH . J 4 HOH B 15 318 26 HOH HOH . J 4 HOH B 16 319 28 HOH HOH . J 4 HOH B 17 320 29 HOH HOH . J 4 HOH B 18 321 31 HOH HOH . J 4 HOH B 19 322 32 HOH HOH . J 4 HOH B 20 323 33 HOH HOH . J 4 HOH B 21 324 35 HOH HOH . J 4 HOH B 22 325 37 HOH HOH . J 4 HOH B 23 326 38 HOH HOH . J 4 HOH B 24 327 40 HOH HOH . J 4 HOH B 25 328 47 HOH HOH . J 4 HOH B 26 329 48 HOH HOH . J 4 HOH B 27 330 49 HOH HOH . J 4 HOH B 28 331 52 HOH HOH . J 4 HOH B 29 332 54 HOH HOH . J 4 HOH B 30 333 55 HOH HOH . J 4 HOH B 31 334 59 HOH HOH . J 4 HOH B 32 335 60 HOH HOH . J 4 HOH B 33 336 62 HOH HOH . J 4 HOH B 34 337 64 HOH HOH . J 4 HOH B 35 338 65 HOH HOH . J 4 HOH B 36 339 68 HOH HOH . J 4 HOH B 37 340 69 HOH HOH . J 4 HOH B 38 341 80 HOH HOH . J 4 HOH B 39 342 89 HOH HOH . J 4 HOH B 40 343 90 HOH HOH . J 4 HOH B 41 344 91 HOH HOH . J 4 HOH B 42 345 92 HOH HOH . J 4 HOH B 43 346 94 HOH HOH . J 4 HOH B 44 347 96 HOH HOH . J 4 HOH B 45 348 101 HOH HOH . J 4 HOH B 46 349 102 HOH HOH . J 4 HOH B 47 350 103 HOH HOH . J 4 HOH B 48 351 104 HOH HOH . J 4 HOH B 49 352 108 HOH HOH . J 4 HOH B 50 353 109 HOH HOH . J 4 HOH B 51 354 110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.677 _atom_site.Cartn_y 60.806 _atom_site.Cartn_z 13.874 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 72.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #