data_1NO9 # _model_server_result.job_id goyfY0C5OPDjwgL5ltQoIA _model_server_result.datetime_utc '2025-07-05 01:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1no9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":250}' # _entry.id 1NO9 # _exptl.entry_id 1NO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.302 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N4-(N,N-DIPHENYLCARBAMOYL)-AMINOGUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.57 _cell.angle_gamma 90 _cell.entry_id 1NO9 _cell.length_a 71.413 _cell.length_b 72.192 _cell.length_c 72.705 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 B OG SER 205 H SER 195 1_555 E C1 4ND . H 4ND 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale3 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C14 H15 N5 O' _chem_comp.formula_weight 269.302 _chem_comp.id 4ND _chem_comp.mon_nstd_flag . _chem_comp.name N4-(N,N-DIPHENYLCARBAMOYL)-AMINOGUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 4ND doub 1 n n C1 N5 4ND sing 2 n n C1 N4 4ND sing 3 n n N5 C3 4ND sing 4 n n N5 C9 4ND sing 5 n n C3 C4 4ND doub 6 n y C3 C8 4ND sing 7 n y C4 C5 4ND sing 8 n y C4 HC41 4ND sing 9 n n C5 C6 4ND doub 10 n y C5 HC51 4ND sing 11 n n C6 C7 4ND sing 12 n y C6 HC61 4ND sing 13 n n C7 C8 4ND doub 14 n y C7 HC71 4ND sing 15 n n C8 HC81 4ND sing 16 n n C9 C10 4ND doub 17 n y C9 C14 4ND sing 18 n y C10 C11 4ND sing 19 n y C10 H101 4ND sing 20 n n C11 C12 4ND doub 21 n y C11 H111 4ND sing 22 n n C12 C13 4ND sing 23 n y C12 H121 4ND sing 24 n n C13 C14 4ND doub 25 n y C13 H131 4ND sing 26 n n C14 H141 4ND sing 27 n n N4 N3 4ND sing 28 n n N4 HN41 4ND sing 29 n n N3 C15 4ND sing 30 n n N3 HN31 4ND sing 31 n n N2 C15 4ND sing 32 n n N2 HN21 4ND sing 33 n n N2 HN22 4ND sing 34 n n N1 C15 4ND doub 35 n n N1 HN11 4ND sing 36 n n # _atom_sites.entry_id 1NO9 _atom_sites.fract_transf_matrix[1][1] 0.014003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002613 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 400 400 NAG NAG . E 5 4ND H 1 250 195 4ND INT . F 6 HOH L 1 16 12 HOH HOH . F 6 HOH L 2 17 15 HOH HOH . F 6 HOH L 3 18 21 HOH HOH . F 6 HOH L 4 19 41 HOH HOH . F 6 HOH L 5 20 51 HOH HOH . F 6 HOH L 6 21 59 HOH HOH . F 6 HOH L 7 22 72 HOH HOH . F 6 HOH L 8 23 112 HOH HOH . F 6 HOH L 9 24 113 HOH HOH . F 6 HOH L 10 25 138 HOH HOH . G 6 HOH H 1 401 1 HOH HOH . G 6 HOH H 2 402 2 HOH HOH . G 6 HOH H 3 403 3 HOH HOH . G 6 HOH H 4 404 4 HOH HOH . G 6 HOH H 5 405 5 HOH HOH . G 6 HOH H 6 406 6 HOH HOH . G 6 HOH H 7 407 7 HOH HOH . G 6 HOH H 8 408 8 HOH HOH . G 6 HOH H 9 409 9 HOH HOH . G 6 HOH H 10 410 10 HOH HOH . G 6 HOH H 11 411 11 HOH HOH . G 6 HOH H 12 412 13 HOH HOH . G 6 HOH H 13 413 14 HOH HOH . G 6 HOH H 14 414 16 HOH HOH . G 6 HOH H 15 415 17 HOH HOH . G 6 HOH H 16 416 18 HOH HOH . G 6 HOH H 17 417 19 HOH HOH . G 6 HOH H 18 418 20 HOH HOH . G 6 HOH H 19 419 22 HOH HOH . G 6 HOH H 20 420 23 HOH HOH . G 6 HOH H 21 421 24 HOH HOH . G 6 HOH H 22 422 25 HOH HOH . G 6 HOH H 23 423 26 HOH HOH . G 6 HOH H 24 424 27 HOH HOH . G 6 HOH H 25 425 28 HOH HOH . G 6 HOH H 26 426 29 HOH HOH . G 6 HOH H 27 427 31 HOH HOH . G 6 HOH H 28 428 32 HOH HOH . G 6 HOH H 29 429 33 HOH HOH . G 6 HOH H 30 430 34 HOH HOH . G 6 HOH H 31 431 35 HOH HOH . G 6 HOH H 32 432 36 HOH HOH . G 6 HOH H 33 433 37 HOH HOH . G 6 HOH H 34 434 38 HOH HOH . G 6 HOH H 35 435 39 HOH HOH . G 6 HOH H 36 436 40 HOH HOH . G 6 HOH H 37 437 42 HOH HOH . G 6 HOH H 38 438 43 HOH HOH . G 6 HOH H 39 439 44 HOH HOH . G 6 HOH H 40 440 45 HOH HOH . G 6 HOH H 41 441 46 HOH HOH . G 6 HOH H 42 442 47 HOH HOH . G 6 HOH H 43 443 48 HOH HOH . G 6 HOH H 44 444 49 HOH HOH . G 6 HOH H 45 445 50 HOH HOH . G 6 HOH H 46 446 52 HOH HOH . G 6 HOH H 47 447 53 HOH HOH . G 6 HOH H 48 448 54 HOH HOH . G 6 HOH H 49 449 55 HOH HOH . G 6 HOH H 50 450 56 HOH HOH . G 6 HOH H 51 451 57 HOH HOH . G 6 HOH H 52 452 58 HOH HOH . G 6 HOH H 53 453 60 HOH HOH . G 6 HOH H 54 454 61 HOH HOH . G 6 HOH H 55 455 62 HOH HOH . G 6 HOH H 56 456 63 HOH HOH . G 6 HOH H 57 457 64 HOH HOH . G 6 HOH H 58 458 65 HOH HOH . G 6 HOH H 59 459 66 HOH HOH . G 6 HOH H 60 460 67 HOH HOH . G 6 HOH H 61 461 68 HOH HOH . G 6 HOH H 62 462 69 HOH HOH . G 6 HOH H 63 463 70 HOH HOH . G 6 HOH H 64 464 71 HOH HOH . G 6 HOH H 65 465 73 HOH HOH . G 6 HOH H 66 466 74 HOH HOH . G 6 HOH H 67 467 75 HOH HOH . G 6 HOH H 68 468 76 HOH HOH . G 6 HOH H 69 469 77 HOH HOH . G 6 HOH H 70 470 78 HOH HOH . G 6 HOH H 71 471 79 HOH HOH . G 6 HOH H 72 472 80 HOH HOH . G 6 HOH H 73 473 81 HOH HOH . G 6 HOH H 74 474 82 HOH HOH . G 6 HOH H 75 475 83 HOH HOH . G 6 HOH H 76 476 84 HOH HOH . G 6 HOH H 77 477 85 HOH HOH . G 6 HOH H 78 478 86 HOH HOH . G 6 HOH H 79 479 87 HOH HOH . G 6 HOH H 80 480 88 HOH HOH . G 6 HOH H 81 481 89 HOH HOH . G 6 HOH H 82 482 90 HOH HOH . G 6 HOH H 83 483 91 HOH HOH . G 6 HOH H 84 484 92 HOH HOH . G 6 HOH H 85 485 93 HOH HOH . G 6 HOH H 86 486 94 HOH HOH . G 6 HOH H 87 487 95 HOH HOH . G 6 HOH H 88 488 96 HOH HOH . G 6 HOH H 89 489 97 HOH HOH . G 6 HOH H 90 490 98 HOH HOH . G 6 HOH H 91 491 99 HOH HOH . G 6 HOH H 92 492 100 HOH HOH . G 6 HOH H 93 493 101 HOH HOH . G 6 HOH H 94 494 102 HOH HOH . G 6 HOH H 95 495 103 HOH HOH . G 6 HOH H 96 496 104 HOH HOH . G 6 HOH H 97 497 105 HOH HOH . G 6 HOH H 98 498 106 HOH HOH . G 6 HOH H 99 499 107 HOH HOH . G 6 HOH H 100 500 108 HOH HOH . G 6 HOH H 101 501 109 HOH HOH . G 6 HOH H 102 502 110 HOH HOH . G 6 HOH H 103 503 111 HOH HOH . G 6 HOH H 104 504 114 HOH HOH . G 6 HOH H 105 505 115 HOH HOH . G 6 HOH H 106 506 116 HOH HOH . G 6 HOH H 107 507 117 HOH HOH . G 6 HOH H 108 508 118 HOH HOH . G 6 HOH H 109 509 119 HOH HOH . G 6 HOH H 110 510 120 HOH HOH . G 6 HOH H 111 511 121 HOH HOH . G 6 HOH H 112 512 122 HOH HOH . G 6 HOH H 113 513 123 HOH HOH . G 6 HOH H 114 514 124 HOH HOH . G 6 HOH H 115 515 125 HOH HOH . G 6 HOH H 116 516 126 HOH HOH . G 6 HOH H 117 517 127 HOH HOH . G 6 HOH H 118 518 128 HOH HOH . G 6 HOH H 119 519 129 HOH HOH . G 6 HOH H 120 520 130 HOH HOH . G 6 HOH H 121 521 132 HOH HOH . G 6 HOH H 122 522 133 HOH HOH . G 6 HOH H 123 523 135 HOH HOH . G 6 HOH H 124 524 137 HOH HOH . G 6 HOH H 125 525 139 HOH HOH . G 6 HOH H 126 526 140 HOH HOH . G 6 HOH H 127 527 141 HOH HOH . G 6 HOH H 128 528 142 HOH HOH . G 6 HOH H 129 529 143 HOH HOH . G 6 HOH H 130 530 144 HOH HOH . G 6 HOH H 131 531 145 HOH HOH . G 6 HOH H 132 532 146 HOH HOH . G 6 HOH H 133 533 147 HOH HOH . H 6 HOH I 1 30 30 HOH HOH . H 6 HOH I 2 131 131 HOH HOH . H 6 HOH I 3 134 134 HOH HOH . H 6 HOH I 4 136 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4ND . . . E 5 15.208 -10.48 19.546 1 31.57 ? C1 4ND 250 H 1 HETATM 2 O O1 4ND . . . E 5 16.204 -10.634 18.813 1 29.18 ? O1 4ND 250 H 1 HETATM 3 N N5 4ND . . . E 5 14.824 -11.445 20.423 1 33 ? N5 4ND 250 H 1 HETATM 4 C C3 4ND . . . E 5 13.648 -11.269 21.353 1 31.34 ? C3 4ND 250 H 1 HETATM 5 C C4 4ND . . . E 5 13.672 -10.251 22.351 1 30.84 ? C4 4ND 250 H 1 HETATM 6 C C5 4ND . . . E 5 12.584 -10.091 23.253 1 31.82 ? C5 4ND 250 H 1 HETATM 7 C C6 4ND . . . E 5 11.461 -10.945 23.165 1 33.5 ? C6 4ND 250 H 1 HETATM 8 C C7 4ND . . . E 5 11.423 -11.96 22.17 1 32.29 ? C7 4ND 250 H 1 HETATM 9 C C8 4ND . . . E 5 12.505 -12.126 21.268 1 31.84 ? C8 4ND 250 H 1 HETATM 10 C C9 4ND . . . E 5 15.614 -12.713 20.495 1 37.19 ? C9 4ND 250 H 1 HETATM 11 C C10 4ND . . . E 5 15.259 -13.813 19.658 1 40.37 ? C10 4ND 250 H 1 HETATM 12 C C11 4ND . . . E 5 16.011 -15.026 19.717 1 41.11 ? C11 4ND 250 H 1 HETATM 13 C C12 4ND . . . E 5 17.114 -15.14 20.608 1 41.15 ? C12 4ND 250 H 1 HETATM 14 C C13 4ND . . . E 5 17.473 -14.043 21.447 1 41.46 ? C13 4ND 250 H 1 HETATM 15 C C14 4ND . . . E 5 16.719 -12.826 21.389 1 40.12 ? C14 4ND 250 H 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #