data_1NO9 # _model_server_result.job_id FuJnK3DxHWWEGUx745xE2A _model_server_result.datetime_utc '2024-12-27 00:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1no9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1NO9 # _exptl.entry_id 1NO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.57 _cell.angle_gamma 90 _cell.entry_id 1NO9 _cell.length_a 71.413 _cell.length_b 72.192 _cell.length_c 72.705 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 B OG SER 205 H SER 195 1_555 E C1 4ND . H 4ND 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale3 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 273 n n C1 O1 NAG sing 274 n n C1 O5 NAG sing 275 n n C1 H1 NAG sing 276 n n C2 C3 NAG sing 277 n n C2 N2 NAG sing 278 n n C2 H2 NAG sing 279 n n C3 C4 NAG sing 280 n n C3 O3 NAG sing 281 n n C3 H3 NAG sing 282 n n C4 C5 NAG sing 283 n n C4 O4 NAG sing 284 n n C4 H4 NAG sing 285 n n C5 C6 NAG sing 286 n n C5 O5 NAG sing 287 n n C5 H5 NAG sing 288 n n C6 O6 NAG sing 289 n n C6 H61 NAG sing 290 n n C6 H62 NAG sing 291 n n C7 C8 NAG sing 292 n n C7 N2 NAG sing 293 n n C7 O7 NAG doub 294 n n C8 H81 NAG sing 295 n n C8 H82 NAG sing 296 n n C8 H83 NAG sing 297 n n N2 HN2 NAG sing 298 n n O1 HO1 NAG sing 299 n n O3 HO3 NAG sing 300 n n O4 HO4 NAG sing 301 n n O6 HO6 NAG sing 302 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1NO9 _atom_sites.fract_transf_matrix[1][1] 0.014003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002613 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 400 400 NAG NAG . E 5 4ND H 1 250 195 4ND INT . F 6 HOH L 1 16 12 HOH HOH . F 6 HOH L 2 17 15 HOH HOH . F 6 HOH L 3 18 21 HOH HOH . F 6 HOH L 4 19 41 HOH HOH . F 6 HOH L 5 20 51 HOH HOH . F 6 HOH L 6 21 59 HOH HOH . F 6 HOH L 7 22 72 HOH HOH . F 6 HOH L 8 23 112 HOH HOH . F 6 HOH L 9 24 113 HOH HOH . F 6 HOH L 10 25 138 HOH HOH . G 6 HOH H 1 401 1 HOH HOH . G 6 HOH H 2 402 2 HOH HOH . G 6 HOH H 3 403 3 HOH HOH . G 6 HOH H 4 404 4 HOH HOH . G 6 HOH H 5 405 5 HOH HOH . G 6 HOH H 6 406 6 HOH HOH . G 6 HOH H 7 407 7 HOH HOH . G 6 HOH H 8 408 8 HOH HOH . G 6 HOH H 9 409 9 HOH HOH . G 6 HOH H 10 410 10 HOH HOH . G 6 HOH H 11 411 11 HOH HOH . G 6 HOH H 12 412 13 HOH HOH . G 6 HOH H 13 413 14 HOH HOH . G 6 HOH H 14 414 16 HOH HOH . G 6 HOH H 15 415 17 HOH HOH . G 6 HOH H 16 416 18 HOH HOH . G 6 HOH H 17 417 19 HOH HOH . G 6 HOH H 18 418 20 HOH HOH . G 6 HOH H 19 419 22 HOH HOH . G 6 HOH H 20 420 23 HOH HOH . G 6 HOH H 21 421 24 HOH HOH . G 6 HOH H 22 422 25 HOH HOH . G 6 HOH H 23 423 26 HOH HOH . G 6 HOH H 24 424 27 HOH HOH . G 6 HOH H 25 425 28 HOH HOH . G 6 HOH H 26 426 29 HOH HOH . G 6 HOH H 27 427 31 HOH HOH . G 6 HOH H 28 428 32 HOH HOH . G 6 HOH H 29 429 33 HOH HOH . G 6 HOH H 30 430 34 HOH HOH . G 6 HOH H 31 431 35 HOH HOH . G 6 HOH H 32 432 36 HOH HOH . G 6 HOH H 33 433 37 HOH HOH . G 6 HOH H 34 434 38 HOH HOH . G 6 HOH H 35 435 39 HOH HOH . G 6 HOH H 36 436 40 HOH HOH . G 6 HOH H 37 437 42 HOH HOH . G 6 HOH H 38 438 43 HOH HOH . G 6 HOH H 39 439 44 HOH HOH . G 6 HOH H 40 440 45 HOH HOH . G 6 HOH H 41 441 46 HOH HOH . G 6 HOH H 42 442 47 HOH HOH . G 6 HOH H 43 443 48 HOH HOH . G 6 HOH H 44 444 49 HOH HOH . G 6 HOH H 45 445 50 HOH HOH . G 6 HOH H 46 446 52 HOH HOH . G 6 HOH H 47 447 53 HOH HOH . G 6 HOH H 48 448 54 HOH HOH . G 6 HOH H 49 449 55 HOH HOH . G 6 HOH H 50 450 56 HOH HOH . G 6 HOH H 51 451 57 HOH HOH . G 6 HOH H 52 452 58 HOH HOH . G 6 HOH H 53 453 60 HOH HOH . G 6 HOH H 54 454 61 HOH HOH . G 6 HOH H 55 455 62 HOH HOH . G 6 HOH H 56 456 63 HOH HOH . G 6 HOH H 57 457 64 HOH HOH . G 6 HOH H 58 458 65 HOH HOH . G 6 HOH H 59 459 66 HOH HOH . G 6 HOH H 60 460 67 HOH HOH . G 6 HOH H 61 461 68 HOH HOH . G 6 HOH H 62 462 69 HOH HOH . G 6 HOH H 63 463 70 HOH HOH . G 6 HOH H 64 464 71 HOH HOH . G 6 HOH H 65 465 73 HOH HOH . G 6 HOH H 66 466 74 HOH HOH . G 6 HOH H 67 467 75 HOH HOH . G 6 HOH H 68 468 76 HOH HOH . G 6 HOH H 69 469 77 HOH HOH . G 6 HOH H 70 470 78 HOH HOH . G 6 HOH H 71 471 79 HOH HOH . G 6 HOH H 72 472 80 HOH HOH . G 6 HOH H 73 473 81 HOH HOH . G 6 HOH H 74 474 82 HOH HOH . G 6 HOH H 75 475 83 HOH HOH . G 6 HOH H 76 476 84 HOH HOH . G 6 HOH H 77 477 85 HOH HOH . G 6 HOH H 78 478 86 HOH HOH . G 6 HOH H 79 479 87 HOH HOH . G 6 HOH H 80 480 88 HOH HOH . G 6 HOH H 81 481 89 HOH HOH . G 6 HOH H 82 482 90 HOH HOH . G 6 HOH H 83 483 91 HOH HOH . G 6 HOH H 84 484 92 HOH HOH . G 6 HOH H 85 485 93 HOH HOH . G 6 HOH H 86 486 94 HOH HOH . G 6 HOH H 87 487 95 HOH HOH . G 6 HOH H 88 488 96 HOH HOH . G 6 HOH H 89 489 97 HOH HOH . G 6 HOH H 90 490 98 HOH HOH . G 6 HOH H 91 491 99 HOH HOH . G 6 HOH H 92 492 100 HOH HOH . G 6 HOH H 93 493 101 HOH HOH . G 6 HOH H 94 494 102 HOH HOH . G 6 HOH H 95 495 103 HOH HOH . G 6 HOH H 96 496 104 HOH HOH . G 6 HOH H 97 497 105 HOH HOH . G 6 HOH H 98 498 106 HOH HOH . G 6 HOH H 99 499 107 HOH HOH . G 6 HOH H 100 500 108 HOH HOH . G 6 HOH H 101 501 109 HOH HOH . G 6 HOH H 102 502 110 HOH HOH . G 6 HOH H 103 503 111 HOH HOH . G 6 HOH H 104 504 114 HOH HOH . G 6 HOH H 105 505 115 HOH HOH . G 6 HOH H 106 506 116 HOH HOH . G 6 HOH H 107 507 117 HOH HOH . G 6 HOH H 108 508 118 HOH HOH . G 6 HOH H 109 509 119 HOH HOH . G 6 HOH H 110 510 120 HOH HOH . G 6 HOH H 111 511 121 HOH HOH . G 6 HOH H 112 512 122 HOH HOH . G 6 HOH H 113 513 123 HOH HOH . G 6 HOH H 114 514 124 HOH HOH . G 6 HOH H 115 515 125 HOH HOH . G 6 HOH H 116 516 126 HOH HOH . G 6 HOH H 117 517 127 HOH HOH . G 6 HOH H 118 518 128 HOH HOH . G 6 HOH H 119 519 129 HOH HOH . G 6 HOH H 120 520 130 HOH HOH . G 6 HOH H 121 521 132 HOH HOH . G 6 HOH H 122 522 133 HOH HOH . G 6 HOH H 123 523 135 HOH HOH . G 6 HOH H 124 524 137 HOH HOH . G 6 HOH H 125 525 139 HOH HOH . G 6 HOH H 126 526 140 HOH HOH . G 6 HOH H 127 527 141 HOH HOH . G 6 HOH H 128 528 142 HOH HOH . G 6 HOH H 129 529 143 HOH HOH . G 6 HOH H 130 530 144 HOH HOH . G 6 HOH H 131 531 145 HOH HOH . G 6 HOH H 132 532 146 HOH HOH . G 6 HOH H 133 533 147 HOH HOH . H 6 HOH I 1 30 30 HOH HOH . H 6 HOH I 2 131 131 HOH HOH . H 6 HOH I 3 134 134 HOH HOH . H 6 HOH I 4 136 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 32.103 -8.61 10.561 1 56.86 ? C1 NAG 400 H 1 HETATM 2 C C2 NAG . . . D 4 33.259 -9.178 11.391 1 59.27 ? C2 NAG 400 H 1 HETATM 3 C C3 NAG . . . D 4 34.429 -8.196 11.475 1 61.07 ? C3 NAG 400 H 1 HETATM 4 C C4 NAG . . . D 4 34.811 -7.655 10.096 1 61.37 ? C4 NAG 400 H 1 HETATM 5 C C5 NAG . . . D 4 33.57 -7.151 9.346 1 61.14 ? C5 NAG 400 H 1 HETATM 6 C C6 NAG . . . D 4 33.9 -6.744 7.921 1 61.7 ? C6 NAG 400 H 1 HETATM 7 C C7 NAG . . . D 4 33.263 -10.511 13.403 1 60.15 ? C7 NAG 400 H 1 HETATM 8 C C8 NAG . . . D 4 33.239 -11.87 12.717 1 60.83 ? C8 NAG 400 H 1 HETATM 9 N N2 NAG . . . D 4 32.784 -9.472 12.728 1 60 ? N2 NAG 400 H 1 HETATM 10 O O3 NAG . . . D 4 35.552 -8.863 12.037 1 62.37 ? O3 NAG 400 H 1 HETATM 11 O O4 NAG . . . D 4 35.743 -6.59 10.25 1 62.68 ? O4 NAG 400 H 1 HETATM 12 O O5 NAG . . . D 4 32.575 -8.197 9.269 1 59.16 ? O5 NAG 400 H 1 HETATM 13 O O6 NAG . . . D 4 32.723 -6.626 7.133 1 63.85 ? O6 NAG 400 H 1 HETATM 14 O O7 NAG . . . D 4 33.692 -10.414 14.553 1 60.95 ? O7 NAG 400 H 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #