data_1NOU # _model_server_result.job_id -dj1qG14HGZfXjbtdrpWJg _model_server_result.datetime_utc '2024-10-15 16:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nou # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":558}' # _entry.id 1NOU # _exptl.entry_id 1NOU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NOU _cell.length_a 112.465 _cell.length_b 112.465 _cell.length_c 397.867 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NOU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1,2 B,D,G,H,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 66.311167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 2 NAG 2 n C NAG 2 C 2 NAG C 1 NAG 2 n D NAG 1 D 1 NAG C 4 NAG 2 n D NAG 2 D 2 NAG C 3 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 91 1_555 A SG CYS 88 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 260 A CYS 309 1_555 A SG CYS 311 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 485 A CYS 534 1_555 A SG CYS 502 A CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf4 B SG CYS 42 B CYS 91 1_555 B SG CYS 88 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf5 B SG CYS 260 B CYS 309 1_555 B SG CYS 311 B CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf6 B SG CYS 485 B CYS 534 1_555 B SG CYS 502 B CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 A ND2 ASN 141 A ASN 190 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 141 B ASN 190 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 1NOU _atom_sites.fract_transf_matrix[1][1] 0.008892 _atom_sites.fract_transf_matrix[1][2] 0.005134 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 557 5 GOL GOL . F 3 GOL A 1 558 6 GOL GOL . G 4 SO4 B 1 557 8 SO4 SO4 . H 3 GOL B 1 558 7 GOL GOL . I 5 HOH A 1 559 4 HOH HOH . I 5 HOH A 2 560 5 HOH HOH . I 5 HOH A 3 561 6 HOH HOH . I 5 HOH A 4 562 7 HOH HOH . I 5 HOH A 5 563 10 HOH HOH . I 5 HOH A 6 564 11 HOH HOH . I 5 HOH A 7 565 12 HOH HOH . I 5 HOH A 8 566 13 HOH HOH . I 5 HOH A 9 567 14 HOH HOH . I 5 HOH A 10 568 16 HOH HOH . I 5 HOH A 11 569 17 HOH HOH . I 5 HOH A 12 570 18 HOH HOH . I 5 HOH A 13 571 19 HOH HOH . I 5 HOH A 14 572 22 HOH HOH . I 5 HOH A 15 573 23 HOH HOH . I 5 HOH A 16 574 25 HOH HOH . I 5 HOH A 17 575 26 HOH HOH . I 5 HOH A 18 576 27 HOH HOH . I 5 HOH A 19 577 29 HOH HOH . I 5 HOH A 20 578 30 HOH HOH . I 5 HOH A 21 579 31 HOH HOH . I 5 HOH A 22 580 35 HOH HOH . I 5 HOH A 23 581 38 HOH HOH . I 5 HOH A 24 582 39 HOH HOH . I 5 HOH A 25 583 41 HOH HOH . I 5 HOH A 26 584 46 HOH HOH . I 5 HOH A 27 585 49 HOH HOH . I 5 HOH A 28 586 50 HOH HOH . I 5 HOH A 29 587 52 HOH HOH . I 5 HOH A 30 588 53 HOH HOH . I 5 HOH A 31 589 57 HOH HOH . I 5 HOH A 32 590 60 HOH HOH . I 5 HOH A 33 591 61 HOH HOH . I 5 HOH A 34 592 62 HOH HOH . I 5 HOH A 35 593 64 HOH HOH . I 5 HOH A 36 594 65 HOH HOH . I 5 HOH A 37 595 67 HOH HOH . I 5 HOH A 38 596 68 HOH HOH . I 5 HOH A 39 597 69 HOH HOH . I 5 HOH A 40 598 72 HOH HOH . I 5 HOH A 41 599 73 HOH HOH . I 5 HOH A 42 600 76 HOH HOH . I 5 HOH A 43 601 79 HOH HOH . I 5 HOH A 44 602 80 HOH HOH . I 5 HOH A 45 603 81 HOH HOH . I 5 HOH A 46 604 82 HOH HOH . I 5 HOH A 47 605 84 HOH HOH . I 5 HOH A 48 606 85 HOH HOH . I 5 HOH A 49 607 87 HOH HOH . I 5 HOH A 50 608 90 HOH HOH . I 5 HOH A 51 609 91 HOH HOH . I 5 HOH A 52 610 93 HOH HOH . I 5 HOH A 53 611 94 HOH HOH . I 5 HOH A 54 612 103 HOH HOH . I 5 HOH A 55 613 105 HOH HOH . I 5 HOH A 56 614 108 HOH HOH . I 5 HOH A 57 615 111 HOH HOH . I 5 HOH A 58 616 114 HOH HOH . I 5 HOH A 59 617 116 HOH HOH . I 5 HOH A 60 618 118 HOH HOH . I 5 HOH A 61 619 119 HOH HOH . I 5 HOH A 62 620 125 HOH HOH . I 5 HOH A 63 621 126 HOH HOH . I 5 HOH A 64 622 128 HOH HOH . I 5 HOH A 65 623 129 HOH HOH . I 5 HOH A 66 624 130 HOH HOH . I 5 HOH A 67 625 131 HOH HOH . I 5 HOH A 68 626 133 HOH HOH . I 5 HOH A 69 627 134 HOH HOH . I 5 HOH A 70 628 136 HOH HOH . I 5 HOH A 71 629 138 HOH HOH . I 5 HOH A 72 630 145 HOH HOH . I 5 HOH A 73 631 149 HOH HOH . I 5 HOH A 74 632 150 HOH HOH . I 5 HOH A 75 633 151 HOH HOH . I 5 HOH A 76 634 165 HOH HOH . I 5 HOH A 77 635 166 HOH HOH . I 5 HOH A 78 636 168 HOH HOH . I 5 HOH A 79 637 169 HOH HOH . I 5 HOH A 80 638 170 HOH HOH . I 5 HOH A 81 639 171 HOH HOH . I 5 HOH A 82 640 172 HOH HOH . I 5 HOH A 83 641 176 HOH HOH . I 5 HOH A 84 642 177 HOH HOH . I 5 HOH A 85 643 178 HOH HOH . I 5 HOH A 86 644 179 HOH HOH . I 5 HOH A 87 645 180 HOH HOH . I 5 HOH A 88 646 184 HOH HOH . I 5 HOH A 89 647 189 HOH HOH . I 5 HOH A 90 648 190 HOH HOH . I 5 HOH A 91 649 191 HOH HOH . I 5 HOH A 92 650 192 HOH HOH . I 5 HOH A 93 651 193 HOH HOH . I 5 HOH A 94 652 194 HOH HOH . I 5 HOH A 95 653 196 HOH HOH . I 5 HOH A 96 654 197 HOH HOH . I 5 HOH A 97 655 199 HOH HOH . I 5 HOH A 98 656 200 HOH HOH . I 5 HOH A 99 657 203 HOH HOH . I 5 HOH A 100 658 207 HOH HOH . I 5 HOH A 101 659 209 HOH HOH . I 5 HOH A 102 660 211 HOH HOH . I 5 HOH A 103 661 212 HOH HOH . I 5 HOH A 104 662 213 HOH HOH . I 5 HOH A 105 663 214 HOH HOH . I 5 HOH A 106 664 216 HOH HOH . I 5 HOH A 107 665 217 HOH HOH . I 5 HOH A 108 666 221 HOH HOH . I 5 HOH A 109 667 223 HOH HOH . J 5 HOH B 1 559 1 HOH HOH . J 5 HOH B 2 560 2 HOH HOH . J 5 HOH B 3 561 3 HOH HOH . J 5 HOH B 4 562 8 HOH HOH . J 5 HOH B 5 563 9 HOH HOH . J 5 HOH B 6 564 15 HOH HOH . J 5 HOH B 7 565 20 HOH HOH . J 5 HOH B 8 566 21 HOH HOH . J 5 HOH B 9 567 24 HOH HOH . J 5 HOH B 10 568 28 HOH HOH . J 5 HOH B 11 569 32 HOH HOH . J 5 HOH B 12 570 33 HOH HOH . J 5 HOH B 13 571 34 HOH HOH . J 5 HOH B 14 572 36 HOH HOH . J 5 HOH B 15 573 37 HOH HOH . J 5 HOH B 16 574 40 HOH HOH . J 5 HOH B 17 575 42 HOH HOH . J 5 HOH B 18 576 43 HOH HOH . J 5 HOH B 19 577 44 HOH HOH . J 5 HOH B 20 578 45 HOH HOH . J 5 HOH B 21 579 47 HOH HOH . J 5 HOH B 22 580 48 HOH HOH . J 5 HOH B 23 581 51 HOH HOH . J 5 HOH B 24 582 54 HOH HOH . J 5 HOH B 25 583 55 HOH HOH . J 5 HOH B 26 584 56 HOH HOH . J 5 HOH B 27 585 58 HOH HOH . J 5 HOH B 28 586 59 HOH HOH . J 5 HOH B 29 587 63 HOH HOH . J 5 HOH B 30 588 66 HOH HOH . J 5 HOH B 31 589 70 HOH HOH . J 5 HOH B 32 590 71 HOH HOH . J 5 HOH B 33 591 74 HOH HOH . J 5 HOH B 34 592 75 HOH HOH . J 5 HOH B 35 593 77 HOH HOH . J 5 HOH B 36 594 78 HOH HOH . J 5 HOH B 37 595 83 HOH HOH . J 5 HOH B 38 596 86 HOH HOH . J 5 HOH B 39 597 88 HOH HOH . J 5 HOH B 40 598 89 HOH HOH . J 5 HOH B 41 599 92 HOH HOH . J 5 HOH B 42 600 95 HOH HOH . J 5 HOH B 43 601 96 HOH HOH . J 5 HOH B 44 602 97 HOH HOH . J 5 HOH B 45 603 98 HOH HOH . J 5 HOH B 46 604 99 HOH HOH . J 5 HOH B 47 605 100 HOH HOH . J 5 HOH B 48 606 101 HOH HOH . J 5 HOH B 49 607 102 HOH HOH . J 5 HOH B 50 608 104 HOH HOH . J 5 HOH B 51 609 106 HOH HOH . J 5 HOH B 52 610 107 HOH HOH . J 5 HOH B 53 611 109 HOH HOH . J 5 HOH B 54 612 110 HOH HOH . J 5 HOH B 55 613 112 HOH HOH . J 5 HOH B 56 614 113 HOH HOH . J 5 HOH B 57 615 115 HOH HOH . J 5 HOH B 58 616 117 HOH HOH . J 5 HOH B 59 617 120 HOH HOH . J 5 HOH B 60 618 121 HOH HOH . J 5 HOH B 61 619 122 HOH HOH . J 5 HOH B 62 620 123 HOH HOH . J 5 HOH B 63 621 124 HOH HOH . J 5 HOH B 64 622 127 HOH HOH . J 5 HOH B 65 623 132 HOH HOH . J 5 HOH B 66 624 135 HOH HOH . J 5 HOH B 67 625 137 HOH HOH . J 5 HOH B 68 626 139 HOH HOH . J 5 HOH B 69 627 140 HOH HOH . J 5 HOH B 70 628 141 HOH HOH . J 5 HOH B 71 629 142 HOH HOH . J 5 HOH B 72 630 143 HOH HOH . J 5 HOH B 73 631 144 HOH HOH . J 5 HOH B 74 632 146 HOH HOH . J 5 HOH B 75 633 147 HOH HOH . J 5 HOH B 76 634 148 HOH HOH . J 5 HOH B 77 635 152 HOH HOH . J 5 HOH B 78 636 153 HOH HOH . J 5 HOH B 79 637 154 HOH HOH . J 5 HOH B 80 638 155 HOH HOH . J 5 HOH B 81 639 156 HOH HOH . J 5 HOH B 82 640 157 HOH HOH . J 5 HOH B 83 641 158 HOH HOH . J 5 HOH B 84 642 159 HOH HOH . J 5 HOH B 85 643 160 HOH HOH . J 5 HOH B 86 644 161 HOH HOH . J 5 HOH B 87 645 162 HOH HOH . J 5 HOH B 88 646 163 HOH HOH . J 5 HOH B 89 647 164 HOH HOH . J 5 HOH B 90 648 167 HOH HOH . J 5 HOH B 91 649 173 HOH HOH . J 5 HOH B 92 650 174 HOH HOH . J 5 HOH B 93 651 175 HOH HOH . J 5 HOH B 94 652 181 HOH HOH . J 5 HOH B 95 653 182 HOH HOH . J 5 HOH B 96 654 183 HOH HOH . J 5 HOH B 97 655 185 HOH HOH . J 5 HOH B 98 656 186 HOH HOH . J 5 HOH B 99 657 187 HOH HOH . J 5 HOH B 100 658 188 HOH HOH . J 5 HOH B 101 659 195 HOH HOH . J 5 HOH B 102 660 198 HOH HOH . J 5 HOH B 103 661 201 HOH HOH . J 5 HOH B 104 662 202 HOH HOH . J 5 HOH B 105 663 204 HOH HOH . J 5 HOH B 106 664 205 HOH HOH . J 5 HOH B 107 665 206 HOH HOH . J 5 HOH B 108 666 208 HOH HOH . J 5 HOH B 109 667 210 HOH HOH . J 5 HOH B 110 668 215 HOH HOH . J 5 HOH B 111 669 218 HOH HOH . J 5 HOH B 112 670 219 HOH HOH . J 5 HOH B 113 671 220 HOH HOH . J 5 HOH B 114 672 222 HOH HOH . J 5 HOH B 115 673 224 HOH HOH . J 5 HOH B 116 674 225 HOH HOH . J 5 HOH B 117 675 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 62.855 39.263 41.81 1 34.38 ? C1 GOL 558 B 1 HETATM 2 O O1 GOL . . . H 3 63.045 39.633 43.158 1 33.83 ? O1 GOL 558 B 1 HETATM 3 C C2 GOL . . . H 3 62.081 40.366 41.069 1 35.17 ? C2 GOL 558 B 1 HETATM 4 O O2 GOL . . . H 3 62.722 41.618 41.183 1 33.26 ? O2 GOL 558 B 1 HETATM 5 C C3 GOL . . . H 3 60.672 40.51 41.632 1 35.14 ? C3 GOL 558 B 1 HETATM 6 O O3 GOL . . . H 3 59.984 39.284 41.604 1 34.36 ? O3 GOL 558 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #