data_1NOX # _model_server_result.job_id DYKxyUIsYdSuEGjXyI51Kw _model_server_result.datetime_utc '2024-11-24 18:26:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1NOX # _exptl.entry_id 1NOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NOX _cell.length_a 62.53 _cell.length_b 60.6 _cell.length_c 56.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 60.6 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 1NOX _atom_sites.fract_transf_matrix[1][1] 0.015992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 300 300 FMN FMN . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 53 HOH HOH . C 3 HOH A 53 353 54 HOH HOH . C 3 HOH A 54 354 55 HOH HOH . C 3 HOH A 55 355 56 HOH HOH . C 3 HOH A 56 356 57 HOH HOH . C 3 HOH A 57 357 58 HOH HOH . C 3 HOH A 58 358 59 HOH HOH . C 3 HOH A 59 359 60 HOH HOH . C 3 HOH A 60 360 61 HOH HOH . C 3 HOH A 61 361 62 HOH HOH . C 3 HOH A 62 362 63 HOH HOH . C 3 HOH A 63 363 64 HOH HOH . C 3 HOH A 64 364 65 HOH HOH . C 3 HOH A 65 365 66 HOH HOH . C 3 HOH A 66 366 68 HOH HOH . C 3 HOH A 67 367 69 HOH HOH . C 3 HOH A 68 368 70 HOH HOH . C 3 HOH A 69 369 71 HOH HOH . C 3 HOH A 70 370 72 HOH HOH . C 3 HOH A 71 371 73 HOH HOH . C 3 HOH A 72 372 74 HOH HOH . C 3 HOH A 73 373 75 HOH HOH . C 3 HOH A 74 374 76 HOH HOH . C 3 HOH A 75 375 78 HOH HOH . C 3 HOH A 76 376 79 HOH HOH . C 3 HOH A 77 377 80 HOH HOH . C 3 HOH A 78 378 81 HOH HOH . C 3 HOH A 79 379 82 HOH HOH . C 3 HOH A 80 380 83 HOH HOH . C 3 HOH A 81 381 84 HOH HOH . C 3 HOH A 82 382 85 HOH HOH . C 3 HOH A 83 383 86 HOH HOH . C 3 HOH A 84 384 87 HOH HOH . C 3 HOH A 85 385 88 HOH HOH . C 3 HOH A 86 386 89 HOH HOH . C 3 HOH A 87 387 90 HOH HOH . C 3 HOH A 88 388 91 HOH HOH . C 3 HOH A 89 389 92 HOH HOH . C 3 HOH A 90 390 93 HOH HOH . C 3 HOH A 91 391 94 HOH HOH . C 3 HOH A 92 392 95 HOH HOH . C 3 HOH A 93 393 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 15.967 32.49 41.892 1 12.45 ? N1 FMN 300 A 1 HETATM 2 C C2 FMN . . . B 2 16.961 33.381 42.311 1 14.36 ? C2 FMN 300 A 1 HETATM 3 O O2 FMN . . . B 2 17.944 33.595 41.704 1 15.36 ? O2 FMN 300 A 1 HETATM 4 N N3 FMN . . . B 2 16.67 34.106 43.542 1 13.73 ? N3 FMN 300 A 1 HETATM 5 C C4 FMN . . . B 2 15.568 33.977 44.335 1 12.41 ? C4 FMN 300 A 1 HETATM 6 O O4 FMN . . . B 2 15.346 34.598 45.38 1 12.81 ? O4 FMN 300 A 1 HETATM 7 C C4A FMN . . . B 2 14.554 32.989 43.952 1 10.43 ? C4A FMN 300 A 1 HETATM 8 N N5 FMN . . . B 2 13.377 32.792 44.483 1 12.14 ? N5 FMN 300 A 1 HETATM 9 C C5A FMN . . . B 2 12.347 32.114 43.901 1 9.21 ? C5A FMN 300 A 1 HETATM 10 C C6 FMN . . . B 2 11.004 32.259 44.427 1 10.95 ? C6 FMN 300 A 1 HETATM 11 C C7 FMN . . . B 2 9.913 31.689 43.753 1 11.04 ? C7 FMN 300 A 1 HETATM 12 C C7M FMN . . . B 2 8.512 31.803 44.313 1 12.49 ? C7M FMN 300 A 1 HETATM 13 C C8 FMN . . . B 2 10.107 30.996 42.497 1 9.87 ? C8 FMN 300 A 1 HETATM 14 C C8M FMN . . . B 2 9.006 30.308 41.73 1 11.34 ? C8M FMN 300 A 1 HETATM 15 C C9 FMN . . . B 2 11.406 30.855 41.969 1 10.75 ? C9 FMN 300 A 1 HETATM 16 C C9A FMN . . . B 2 12.584 31.404 42.603 1 9.58 ? C9A FMN 300 A 1 HETATM 17 N N10 FMN . . . B 2 13.907 31.491 42.096 1 11.83 ? N10 FMN 300 A 1 HETATM 18 C C10 FMN . . . B 2 14.924 32.317 42.695 1 11.99 ? C10 FMN 300 A 1 HETATM 19 C C1' FMN . . . B 2 14.179 30.791 40.74 1 10.62 ? C1' FMN 300 A 1 HETATM 20 C C2' FMN . . . B 2 14.041 29.312 41.075 1 12.62 ? C2' FMN 300 A 1 HETATM 21 O O2' FMN . . . B 2 15.264 28.704 41.653 1 16.45 ? O2' FMN 300 A 1 HETATM 22 C C3' FMN . . . B 2 13.869 28.364 39.797 1 10.99 ? C3' FMN 300 A 1 HETATM 23 O O3' FMN . . . B 2 12.552 28.839 39.286 1 10.49 ? O3' FMN 300 A 1 HETATM 24 C C4' FMN . . . B 2 13.869 26.84 39.644 1 11.78 ? C4' FMN 300 A 1 HETATM 25 O O4' FMN . . . B 2 15.24 26.515 40.149 1 13.99 ? O4' FMN 300 A 1 HETATM 26 C C5' FMN . . . B 2 13.597 26.132 38.295 1 11.86 ? C5' FMN 300 A 1 HETATM 27 O O5' FMN . . . B 2 14.395 26.911 37.37 1 11.2 ? O5' FMN 300 A 1 HETATM 28 P P FMN . . . B 2 13.754 27.669 36.116 1 9.95 ? P FMN 300 A 1 HETATM 29 O O1P FMN . . . B 2 12.905 26.706 35.34 1 12.3 ? O1P FMN 300 A 1 HETATM 30 O O2P FMN . . . B 2 14.996 28.081 35.331 1 10.98 ? O2P FMN 300 A 1 HETATM 31 O O3P FMN . . . B 2 12.91 28.838 36.679 1 10.29 ? O3P FMN 300 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #