data_1NP1 # _model_server_result.job_id HLKuBMIHcgej7sTSVKHLzw _model_server_result.datetime_utc '2024-11-27 18:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1np1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1NP1 # _exptl.entry_id 1NP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.94 _cell.angle_gamma 90 _cell.entry_id 1NP1 _cell.length_a 39.55 _cell.length_b 74.57 _cell.length_c 66.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 41 A CYS 41 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 B SG CYS 41 B CYS 41 1_555 B SG CYS 171 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 59 A HIS 59 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc2 D FE HEM . A HEM 302 1_555 E NE2 HSM . A HSM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 B NE2 HIS 59 B HIS 59 1_555 G FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 G FE HEM . B HEM 303 1_555 H NE2 HSM . B HSM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 359 n n P O2 PO4 sing 360 n n P O3 PO4 sing 361 n n P O4 PO4 sing 362 n n # _atom_sites.entry_id 1NP1 _atom_sites.fract_transf_matrix[1][1] 0.025284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004431 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 301 PO4 PO4 . D 3 HEM A 1 302 1 HEM HEM . E 4 HSM A 1 303 2 HSM HSM . F 2 PO4 B 1 302 302 PO4 PO4 . G 3 HEM B 1 303 1 HEM HEM . H 4 HSM B 1 304 2 HSM HSM . I 5 HOH A 1 304 303 HOH HOH . I 5 HOH A 2 305 305 HOH HOH . I 5 HOH A 3 306 306 HOH HOH . I 5 HOH A 4 307 307 HOH HOH . I 5 HOH A 5 308 308 HOH HOH . I 5 HOH A 6 309 309 HOH HOH . I 5 HOH A 7 310 310 HOH HOH . I 5 HOH A 8 311 311 HOH HOH . I 5 HOH A 9 312 312 HOH HOH . I 5 HOH A 10 313 313 HOH HOH . I 5 HOH A 11 314 314 HOH HOH . I 5 HOH A 12 315 315 HOH HOH . I 5 HOH A 13 316 316 HOH HOH . I 5 HOH A 14 317 317 HOH HOH . I 5 HOH A 15 318 318 HOH HOH . I 5 HOH A 16 319 319 HOH HOH . I 5 HOH A 17 320 320 HOH HOH . I 5 HOH A 18 321 321 HOH HOH . I 5 HOH A 19 322 322 HOH HOH . I 5 HOH A 20 323 323 HOH HOH . I 5 HOH A 21 324 324 HOH HOH . I 5 HOH A 22 325 325 HOH HOH . I 5 HOH A 23 326 326 HOH HOH . I 5 HOH A 24 327 327 HOH HOH . I 5 HOH A 25 328 328 HOH HOH . I 5 HOH A 26 329 329 HOH HOH . I 5 HOH A 27 330 330 HOH HOH . I 5 HOH A 28 331 331 HOH HOH . I 5 HOH A 29 332 332 HOH HOH . I 5 HOH A 30 333 333 HOH HOH . I 5 HOH A 31 334 334 HOH HOH . I 5 HOH A 32 335 335 HOH HOH . I 5 HOH A 33 336 336 HOH HOH . I 5 HOH A 34 337 337 HOH HOH . I 5 HOH A 35 338 338 HOH HOH . I 5 HOH A 36 339 339 HOH HOH . I 5 HOH A 37 340 340 HOH HOH . I 5 HOH A 38 341 341 HOH HOH . I 5 HOH A 39 342 342 HOH HOH . I 5 HOH A 40 343 343 HOH HOH . I 5 HOH A 41 344 344 HOH HOH . I 5 HOH A 42 345 345 HOH HOH . I 5 HOH A 43 346 346 HOH HOH . I 5 HOH A 44 347 347 HOH HOH . I 5 HOH A 45 348 348 HOH HOH . I 5 HOH A 46 349 349 HOH HOH . I 5 HOH A 47 350 350 HOH HOH . I 5 HOH A 48 351 351 HOH HOH . I 5 HOH A 49 352 352 HOH HOH . I 5 HOH A 50 353 353 HOH HOH . I 5 HOH A 51 354 354 HOH HOH . I 5 HOH A 52 355 355 HOH HOH . I 5 HOH A 53 356 356 HOH HOH . I 5 HOH A 54 357 357 HOH HOH . I 5 HOH A 55 358 358 HOH HOH . I 5 HOH A 56 359 359 HOH HOH . I 5 HOH A 57 360 360 HOH HOH . I 5 HOH A 58 361 361 HOH HOH . I 5 HOH A 59 362 362 HOH HOH . I 5 HOH A 60 363 363 HOH HOH . I 5 HOH A 61 364 364 HOH HOH . I 5 HOH A 62 365 365 HOH HOH . I 5 HOH A 63 366 366 HOH HOH . I 5 HOH A 64 367 367 HOH HOH . I 5 HOH A 65 368 368 HOH HOH . I 5 HOH A 66 369 369 HOH HOH . I 5 HOH A 67 370 370 HOH HOH . I 5 HOH A 68 371 371 HOH HOH . I 5 HOH A 69 372 372 HOH HOH . I 5 HOH A 70 373 373 HOH HOH . I 5 HOH A 71 374 374 HOH HOH . I 5 HOH A 72 375 375 HOH HOH . I 5 HOH A 73 376 376 HOH HOH . I 5 HOH A 74 377 377 HOH HOH . I 5 HOH A 75 378 378 HOH HOH . I 5 HOH A 76 379 379 HOH HOH . I 5 HOH A 77 380 380 HOH HOH . I 5 HOH A 78 381 381 HOH HOH . I 5 HOH A 79 382 382 HOH HOH . I 5 HOH A 80 383 383 HOH HOH . I 5 HOH A 81 384 384 HOH HOH . I 5 HOH A 82 385 385 HOH HOH . I 5 HOH A 83 386 457 HOH HOH . J 5 HOH B 1 305 304 HOH HOH . J 5 HOH B 2 306 386 HOH HOH . J 5 HOH B 3 307 387 HOH HOH . J 5 HOH B 4 308 388 HOH HOH . J 5 HOH B 5 309 389 HOH HOH . J 5 HOH B 6 310 390 HOH HOH . J 5 HOH B 7 311 391 HOH HOH . J 5 HOH B 8 312 392 HOH HOH . J 5 HOH B 9 313 393 HOH HOH . J 5 HOH B 10 314 394 HOH HOH . J 5 HOH B 11 315 395 HOH HOH . J 5 HOH B 12 316 396 HOH HOH . J 5 HOH B 13 317 397 HOH HOH . J 5 HOH B 14 318 398 HOH HOH . J 5 HOH B 15 319 399 HOH HOH . J 5 HOH B 16 320 400 HOH HOH . J 5 HOH B 17 321 401 HOH HOH . J 5 HOH B 18 322 402 HOH HOH . J 5 HOH B 19 323 403 HOH HOH . J 5 HOH B 20 324 404 HOH HOH . J 5 HOH B 21 325 405 HOH HOH . J 5 HOH B 22 326 406 HOH HOH . J 5 HOH B 23 327 407 HOH HOH . J 5 HOH B 24 328 408 HOH HOH . J 5 HOH B 25 329 409 HOH HOH . J 5 HOH B 26 330 410 HOH HOH . J 5 HOH B 27 331 411 HOH HOH . J 5 HOH B 28 332 412 HOH HOH . J 5 HOH B 29 333 413 HOH HOH . J 5 HOH B 30 334 414 HOH HOH . J 5 HOH B 31 335 415 HOH HOH . J 5 HOH B 32 336 416 HOH HOH . J 5 HOH B 33 337 417 HOH HOH . J 5 HOH B 34 338 418 HOH HOH . J 5 HOH B 35 339 419 HOH HOH . J 5 HOH B 36 340 420 HOH HOH . J 5 HOH B 37 341 421 HOH HOH . J 5 HOH B 38 342 422 HOH HOH . J 5 HOH B 39 343 423 HOH HOH . J 5 HOH B 40 344 424 HOH HOH . J 5 HOH B 41 345 425 HOH HOH . J 5 HOH B 42 346 426 HOH HOH . J 5 HOH B 43 347 427 HOH HOH . J 5 HOH B 44 348 428 HOH HOH . J 5 HOH B 45 349 429 HOH HOH . J 5 HOH B 46 350 430 HOH HOH . J 5 HOH B 47 351 431 HOH HOH . J 5 HOH B 48 352 432 HOH HOH . J 5 HOH B 49 353 433 HOH HOH . J 5 HOH B 50 354 434 HOH HOH . J 5 HOH B 51 355 435 HOH HOH . J 5 HOH B 52 356 436 HOH HOH . J 5 HOH B 53 357 437 HOH HOH . J 5 HOH B 54 358 438 HOH HOH . J 5 HOH B 55 359 439 HOH HOH . J 5 HOH B 56 360 440 HOH HOH . J 5 HOH B 57 361 441 HOH HOH . J 5 HOH B 58 362 442 HOH HOH . J 5 HOH B 59 363 443 HOH HOH . J 5 HOH B 60 364 444 HOH HOH . J 5 HOH B 61 365 445 HOH HOH . J 5 HOH B 62 366 446 HOH HOH . J 5 HOH B 63 367 447 HOH HOH . J 5 HOH B 64 368 448 HOH HOH . J 5 HOH B 65 369 449 HOH HOH . J 5 HOH B 66 370 450 HOH HOH . J 5 HOH B 67 371 451 HOH HOH . J 5 HOH B 68 372 452 HOH HOH . J 5 HOH B 69 373 453 HOH HOH . J 5 HOH B 70 374 454 HOH HOH . J 5 HOH B 71 375 455 HOH HOH . J 5 HOH B 72 376 456 HOH HOH . J 5 HOH B 73 377 458 HOH HOH . J 5 HOH B 74 378 459 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 36.919 25.218 83.974 1 72.36 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . C 2 38.268 24.591 83.889 1 71.78 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . C 2 36.82 26.057 85.191 1 70.72 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . C 2 35.901 24.143 84.055 1 73.18 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . C 2 36.674 26.067 82.769 1 70.37 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #