data_1NPA
#
_model_server_result.job_id            aA9NHTRf01T1PsGlChQsrQ 
_model_server_result.datetime_utc      '2025-02-27 10:21:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1npa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":100}' 
#
_entry.id    1NPA 
#
_exptl.entry_id    1NPA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              629.743 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NPA 
_cell.length_a            58.26 
_cell.length_b            87.46 
_cell.length_c            46.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NPA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H43 N3 O7' 
_chem_comp.formula_weight    629.743 
_chem_comp.id                3NH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3S)-TETRAHYDROFURAN-3-YL (1R,2S)-3-[4-((1R)-2-{[(S)-AMINO(HYDROXY)METHYL]OXY}-2,3-DIHYDRO-1H-INDEN-1-YL)-2-BENZYL-3-OXOPYRROLIDIN-2-YL]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C1 3NH sing 1 n n 
O2 HO2 3NH sing 2 n n 
C1 O1 3NH sing 3 n n 
C1 N1 3NH sing 4 n n 
C1 H1 3NH sing 5 n n 
O1 C20 3NH sing 6 n n 
C20 C22 3NH sing 7 n n 
C20 C19 3NH sing 8 n n 
C20 H20 3NH sing 9 n n 
C22 C23 3NH sing 10 n n 
C22 H221 3NH sing 11 n n 
C22 H222 3NH sing 12 n n 
C23 C24 3NH doub 13 n y 
C23 C28 3NH sing 14 n y 
C24 C25 3NH sing 15 n y 
C24 H24 3NH sing 16 n n 
C25 C26 3NH doub 17 n y 
C25 H25 3NH sing 18 n n 
C26 C27 3NH sing 19 n y 
C26 H26 3NH sing 20 n n 
C27 C28 3NH doub 21 n y 
C27 H27 3NH sing 22 n n 
C28 C19 3NH sing 23 n n 
C19 C35 3NH sing 24 n n 
C19 H19 3NH sing 25 n n 
C35 C17 3NH sing 26 n n 
C35 C30 3NH sing 27 n n 
C35 H35 3NH sing 28 n n 
C17 O18 3NH doub 29 n n 
C17 C09 3NH sing 30 n n 
C09 N29 3NH sing 31 n n 
C09 C10 3NH sing 32 n n 
C09 C08 3NH sing 33 n n 
N29 C30 3NH sing 34 n n 
N29 H29 3NH sing 35 n n 
C30 H301 3NH sing 36 n n 
C30 H302 3NH sing 37 n n 
C10 C11 3NH sing 38 n n 
C10 H101 3NH sing 39 n n 
C10 H102 3NH sing 40 n n 
C11 C12 3NH doub 41 n y 
C11 C16 3NH sing 42 n y 
C12 C13 3NH sing 43 n y 
C12 H12 3NH sing 44 n n 
C13 C14 3NH doub 45 n y 
C13 H13 3NH sing 46 n n 
C14 C15 3NH sing 47 n y 
C14 H14 3NH sing 48 n n 
C15 C16 3NH doub 49 n y 
C15 H15 3NH sing 50 n n 
C16 H16 3NH sing 51 n n 
C08 C06 3NH sing 52 n n 
C08 H081 3NH sing 53 n n 
C08 H082 3NH sing 54 n n 
C06 O07 3NH sing 55 n n 
C06 C05 3NH sing 56 n n 
C06 H06 3NH sing 57 n n 
O07 H07 3NH sing 58 n n 
C05 NP4 3NH sing 59 n n 
C05 C36 3NH sing 60 n n 
C05 H05 3NH sing 61 n n 
NP4 C02 3NH sing 62 n n 
NP4 HP4 3NH sing 63 n n 
C02 O03 3NH doub 64 n n 
C02 O01 3NH sing 65 n n 
O01 C44 3NH sing 66 n n 
C44 C45 3NH sing 67 n n 
C44 C48 3NH sing 68 n n 
C44 H44 3NH sing 69 n n 
C45 O46 3NH sing 70 n n 
C45 H451 3NH sing 71 n n 
C45 H452 3NH sing 72 n n 
O46 C47 3NH sing 73 n n 
C47 C48 3NH sing 74 n n 
C47 H471 3NH sing 75 n n 
C47 H472 3NH sing 76 n n 
C48 H481 3NH sing 77 n n 
C48 H482 3NH sing 78 n n 
C36 C37 3NH sing 79 n n 
C36 H361 3NH sing 80 n n 
C36 H362 3NH sing 81 n n 
C37 C38 3NH doub 82 n y 
C37 C42 3NH sing 83 n y 
C38 C39 3NH sing 84 n y 
C38 H38 3NH sing 85 n n 
C39 C40 3NH doub 86 n y 
C39 H39 3NH sing 87 n n 
C40 C41 3NH sing 88 n y 
C40 H40 3NH sing 89 n n 
C41 C42 3NH doub 90 n y 
C41 H41 3NH sing 91 n n 
C42 H42 3NH sing 92 n n 
N1 HN11 3NH sing 93 n n 
N1 HN12 3NH sing 94 n n 
#
_atom_sites.entry_id                     1NPA 
_atom_sites.fract_transf_matrix[1][1]    0.017164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011434 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3NH A 1 100 1 3NH INH . 
D 3 HOH A 1 304 304 HOH WAT . 
D 3 HOH A 2 305 305 HOH WAT . 
D 3 HOH A 3 309 309 HOH WAT . 
D 3 HOH A 4 311 311 HOH WAT . 
D 3 HOH A 5 312 312 HOH WAT . 
D 3 HOH A 6 313 313 HOH WAT . 
D 3 HOH A 7 319 319 HOH WAT . 
D 3 HOH A 8 320 320 HOH WAT . 
D 3 HOH A 9 321 321 HOH WAT . 
D 3 HOH A 10 322 322 HOH WAT . 
D 3 HOH A 11 325 325 HOH WAT . 
D 3 HOH A 12 327 327 HOH WAT . 
D 3 HOH A 13 328 328 HOH WAT . 
D 3 HOH A 14 330 330 HOH WAT . 
D 3 HOH A 15 331 331 HOH WAT . 
D 3 HOH A 16 333 333 HOH WAT . 
D 3 HOH A 17 337 337 HOH WAT . 
D 3 HOH A 18 338 338 HOH WAT . 
D 3 HOH A 19 344 344 HOH WAT . 
D 3 HOH A 20 345 345 HOH WAT . 
D 3 HOH A 21 350 350 HOH WAT . 
D 3 HOH A 22 366 366 HOH WAT . 
D 3 HOH A 23 367 367 HOH WAT . 
D 3 HOH A 24 368 368 HOH WAT . 
D 3 HOH A 25 369 369 HOH WAT . 
D 3 HOH A 26 370 370 HOH WAT . 
D 3 HOH A 27 371 371 HOH WAT . 
D 3 HOH A 28 375 375 HOH WAT . 
D 3 HOH A 29 376 376 HOH WAT . 
D 3 HOH A 30 377 377 HOH WAT . 
D 3 HOH A 31 378 378 HOH WAT . 
D 3 HOH A 32 380 380 HOH WAT . 
D 3 HOH A 33 382 382 HOH WAT . 
D 3 HOH A 34 383 383 HOH WAT . 
D 3 HOH A 35 384 384 HOH WAT . 
D 3 HOH A 36 385 385 HOH WAT . 
D 3 HOH A 37 389 389 HOH WAT . 
D 3 HOH A 38 390 390 HOH WAT . 
D 3 HOH A 39 391 391 HOH WAT . 
D 3 HOH A 40 393 393 HOH WAT . 
D 3 HOH A 41 397 397 HOH WAT . 
D 3 HOH A 42 399 399 HOH WAT . 
D 3 HOH A 43 401 401 HOH WAT . 
D 3 HOH A 44 403 403 HOH WAT . 
D 3 HOH A 45 404 404 HOH WAT . 
D 3 HOH A 46 405 405 HOH WAT . 
D 3 HOH A 47 406 406 HOH WAT . 
D 3 HOH A 48 407 407 HOH WAT . 
D 3 HOH A 49 410 410 HOH WAT . 
D 3 HOH A 50 411 411 HOH WAT . 
D 3 HOH A 51 412 412 HOH WAT . 
D 3 HOH A 52 413 413 HOH WAT . 
D 3 HOH A 53 414 414 HOH WAT . 
D 3 HOH A 54 416 416 HOH WAT . 
D 3 HOH A 55 417 417 HOH WAT . 
D 3 HOH A 56 422 422 HOH WAT . 
D 3 HOH A 57 425 425 HOH WAT . 
E 3 HOH B 1 302 302 HOH WAT . 
E 3 HOH B 2 303 303 HOH WAT . 
E 3 HOH B 3 306 306 HOH WAT . 
E 3 HOH B 4 307 307 HOH WAT . 
E 3 HOH B 5 308 308 HOH WAT . 
E 3 HOH B 6 310 310 HOH WAT . 
E 3 HOH B 7 314 314 HOH WAT . 
E 3 HOH B 8 315 315 HOH WAT . 
E 3 HOH B 9 316 316 HOH WAT . 
E 3 HOH B 10 317 317 HOH WAT . 
E 3 HOH B 11 318 318 HOH WAT . 
E 3 HOH B 12 323 323 HOH WAT . 
E 3 HOH B 13 324 324 HOH WAT . 
E 3 HOH B 14 326 326 HOH WAT . 
E 3 HOH B 15 329 329 HOH WAT . 
E 3 HOH B 16 332 332 HOH WAT . 
E 3 HOH B 17 334 334 HOH WAT . 
E 3 HOH B 18 335 335 HOH WAT . 
E 3 HOH B 19 336 336 HOH WAT . 
E 3 HOH B 20 339 339 HOH WAT . 
E 3 HOH B 21 340 340 HOH WAT . 
E 3 HOH B 22 341 341 HOH WAT . 
E 3 HOH B 23 342 342 HOH WAT . 
E 3 HOH B 24 343 343 HOH WAT . 
E 3 HOH B 25 346 346 HOH WAT . 
E 3 HOH B 26 347 347 HOH WAT . 
E 3 HOH B 27 348 348 HOH WAT . 
E 3 HOH B 28 349 349 HOH WAT . 
E 3 HOH B 29 351 351 HOH WAT . 
E 3 HOH B 30 352 352 HOH WAT . 
E 3 HOH B 31 353 353 HOH WAT . 
E 3 HOH B 32 354 354 HOH WAT . 
E 3 HOH B 33 355 355 HOH WAT . 
E 3 HOH B 34 356 356 HOH WAT . 
E 3 HOH B 35 357 357 HOH WAT . 
E 3 HOH B 36 358 358 HOH WAT . 
E 3 HOH B 37 359 359 HOH WAT . 
E 3 HOH B 38 360 360 HOH WAT . 
E 3 HOH B 39 361 361 HOH WAT . 
E 3 HOH B 40 362 362 HOH WAT . 
E 3 HOH B 41 363 363 HOH WAT . 
E 3 HOH B 42 364 364 HOH WAT . 
E 3 HOH B 43 365 365 HOH WAT . 
E 3 HOH B 44 372 372 HOH WAT . 
E 3 HOH B 45 373 373 HOH WAT . 
E 3 HOH B 46 374 374 HOH WAT . 
E 3 HOH B 47 379 379 HOH WAT . 
E 3 HOH B 48 381 381 HOH WAT . 
E 3 HOH B 49 386 386 HOH WAT . 
E 3 HOH B 50 387 387 HOH WAT . 
E 3 HOH B 51 388 388 HOH WAT . 
E 3 HOH B 52 392 392 HOH WAT . 
E 3 HOH B 53 394 394 HOH WAT . 
E 3 HOH B 54 395 395 HOH WAT . 
E 3 HOH B 55 396 396 HOH WAT . 
E 3 HOH B 56 398 398 HOH WAT . 
E 3 HOH B 57 400 400 HOH WAT . 
E 3 HOH B 58 402 402 HOH WAT . 
E 3 HOH B 59 408 408 HOH WAT . 
E 3 HOH B 60 409 409 HOH WAT . 
E 3 HOH B 61 415 415 HOH WAT . 
E 3 HOH B 62 418 418 HOH WAT . 
E 3 HOH B 63 419 419 HOH WAT . 
E 3 HOH B 64 420 420 HOH WAT . 
E 3 HOH B 65 421 421 HOH WAT . 
E 3 HOH B 66 423 423 HOH WAT . 
E 3 HOH B 67 424 424 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 3NH . . . C 2 8.249 28.863 3.762 1 19.52 ? O2 3NH 100 A 1 
HETATM 2 C C1 3NH . . . C 2 7.818 27.918 4.365 1 19.6 ? C1 3NH 100 A 1 
HETATM 3 O O1 3NH . . . C 2 8.576 27.284 5.255 1 23.58 ? O1 3NH 100 A 1 
HETATM 4 C C20 3NH . . . C 2 8.189 26.12 6.024 1 16.48 ? C20 3NH 100 A 1 
HETATM 5 C C22 3NH . . . C 2 7.444 26.654 7.26 1 13.81 ? C22 3NH 100 A 1 
HETATM 6 C C23 3NH . . . C 2 8.637 27.161 8.01 1 17.53 ? C23 3NH 100 A 1 
HETATM 7 C C24 3NH . . . C 2 8.632 28.111 9.031 1 14.8 ? C24 3NH 100 A 1 
HETATM 8 C C25 3NH . . . C 2 9.822 28.37 9.688 1 9.57 ? C25 3NH 100 A 1 
HETATM 9 C C26 3NH . . . C 2 11.007 27.71 9.318 1 6.67 ? C26 3NH 100 A 1 
HETATM 10 C C27 3NH . . . C 2 11.011 26.775 8.276 1 12.55 ? C27 3NH 100 A 1 
HETATM 11 C C28 3NH . . . C 2 9.817 26.507 7.623 1 14.37 ? C28 3NH 100 A 1 
HETATM 12 C C19 3NH . . . C 2 9.525 25.5 6.535 1 12.32 ? C19 3NH 100 A 1 
HETATM 13 C C35 3NH . . . C 2 10.556 25.287 5.478 1 9.38 ? C35 3NH 100 A 1 
HETATM 14 C C17 3NH . . . C 2 10.904 23.989 4.999 1 14.14 ? C17 3NH 100 A 1 
HETATM 15 O O18 3NH . . . C 2 10.542 22.929 5.451 1 16.28 ? O18 3NH 100 A 1 
HETATM 16 C C09 3NH . . . C 2 11.912 24.124 3.833 1 12.12 ? C09 3NH 100 A 1 
HETATM 17 N N29 3NH . . . C 2 12.173 25.564 3.821 1 12.21 ? N29 3NH 100 A 1 
HETATM 18 C C30 3NH . . . C 2 11.27 26.157 4.797 1 4.97 ? C30 3NH 100 A 1 
HETATM 19 C C10 3NH . . . C 2 11.27 23.545 2.554 1 8.74 ? C10 3NH 100 A 1 
HETATM 20 C C11 3NH . . . C 2 9.845 24.049 2.393 1 11.73 ? C11 3NH 100 A 1 
HETATM 21 C C12 3NH . . . C 2 9.655 25.268 1.757 1 9.26 ? C12 3NH 100 A 1 
HETATM 22 C C13 3NH . . . C 2 8.414 25.791 1.575 1 7.94 ? C13 3NH 100 A 1 
HETATM 23 C C14 3NH . . . C 2 7.339 25.114 2.052 1 10.13 ? C14 3NH 100 A 1 
HETATM 24 C C15 3NH . . . C 2 7.524 23.888 2.686 1 10.15 ? C15 3NH 100 A 1 
HETATM 25 C C16 3NH . . . C 2 8.764 23.348 2.87 1 7.6 ? C16 3NH 100 A 1 
HETATM 26 C C08 3NH . . . C 2 13.208 23.351 4.234 1 11.03 ? C08 3NH 100 A 1 
HETATM 27 C C06 3NH . . . C 2 13.969 24.087 5.414 1 11.42 ? C06 3NH 100 A 1 
HETATM 28 O O07 3NH . . . C 2 14.965 24.822 4.679 1 6.76 ? O07 3NH 100 A 1 
HETATM 29 C C05 3NH . . . C 2 14.683 23.101 6.36 1 8.7 ? C05 3NH 100 A 1 
HETATM 30 N NP4 3NH . . . C 2 15.58 22.128 5.674 1 10.48 ? NP4 3NH 100 A 1 
HETATM 31 C C02 3NH . . . C 2 15.289 20.848 5.226 1 13.13 ? C02 3NH 100 A 1 
HETATM 32 O O03 3NH . . . C 2 14.215 20.333 5.151 1 13.36 ? O03 3NH 100 A 1 
HETATM 33 O O01 3NH . . . C 2 16.359 20.23 4.858 1 15.5 ? O01 3NH 100 A 1 
HETATM 34 C C44 3NH . . . C 2 16.397 19.188 3.924 1 14.95 ? C44 3NH 100 A 1 
HETATM 35 C C45 3NH . . . C 2 17.558 18.269 3.874 1 14.02 ? C45 3NH 100 A 1 
HETATM 36 O O46 3NH . . . C 2 17.844 18.428 2.515 1 16.83 ? O46 3NH 100 A 1 
HETATM 37 C C47 3NH . . . C 2 16.614 18.41 1.753 1 14.27 ? C47 3NH 100 A 1 
HETATM 38 C C48 3NH . . . C 2 15.514 18.835 2.758 1 13.64 ? C48 3NH 100 A 1 
HETATM 39 C C36 3NH . . . C 2 15.481 23.75 7.49 1 12.57 ? C36 3NH 100 A 1 
HETATM 40 C C37 3NH . . . C 2 16.046 22.646 8.405 1 11.62 ? C37 3NH 100 A 1 
HETATM 41 C C38 3NH . . . C 2 15.137 21.896 9.169 1 15.84 ? C38 3NH 100 A 1 
HETATM 42 C C39 3NH . . . C 2 15.579 20.792 9.916 1 18.36 ? C39 3NH 100 A 1 
HETATM 43 C C40 3NH . . . C 2 16.933 20.434 9.964 1 10.7 ? C40 3NH 100 A 1 
HETATM 44 C C41 3NH . . . C 2 17.857 21.214 9.259 1 14.24 ? C41 3NH 100 A 1 
HETATM 45 C C42 3NH . . . C 2 17.412 22.31 8.481 1 15.23 ? C42 3NH 100 A 1 
HETATM 46 N N1 3NH . . . C 2 6.548 27.557 4.316 1 17.33 ? N1 3NH 100 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           46 
#