data_1NPW # _model_server_result.job_id MXsXLhODVglXBnFn_L4fkg _model_server_result.datetime_utc '2024-12-25 18:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1npw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":479}' # _entry.id 1NPW # _exptl.entry_id 1NPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.711 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBAMIC ACID 1-{5-BENZYL-5-[2-HYDROXY-4-PHENYL-3-(TETRAHYDRO-FURAN- 3-YLOXYCARBONYLAMINO)-BUTYL]-4-OXO-4,5-DIHYDRO-1H-PYRROL-3-YL}- INDAN-2-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NPW _cell.length_a 58.6 _cell.length_b 87.4 _cell.length_c 46.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H39 N3 O7' _chem_comp.formula_weight 625.711 _chem_comp.id LGZ _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBAMIC ACID 1-{5-BENZYL-5-[2-HYDROXY-4-PHENYL-3-(TETRAHYDRO-FURAN- 3-YLOXYCARBONYLAMINO)-BUTYL]-4-OXO-4,5-DIHYDRO-1H-PYRROL-3-YL}- INDAN-2-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LGZ479 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 LGZ sing 194 n n O01 C44 LGZ sing 195 n n C02 O03 LGZ doub 196 n n C02 NP4 LGZ sing 197 n n NP4 C05 LGZ sing 198 n n NP4 H1 LGZ sing 199 n n C05 C06 LGZ sing 200 n n C05 C36 LGZ sing 201 n n C05 H2 LGZ sing 202 n n C06 O07 LGZ sing 203 n n C06 C08 LGZ sing 204 n n C06 H3 LGZ sing 205 n n O07 H4 LGZ sing 206 n n C08 C09 LGZ sing 207 n n C08 H5 LGZ sing 208 n n C08 H6 LGZ sing 209 n n C09 C10 LGZ sing 210 n n C09 C17 LGZ sing 211 n n C09 N29 LGZ sing 212 n n C10 C11 LGZ sing 213 n n C10 H7 LGZ sing 214 n n C10 H8 LGZ sing 215 n n C11 C12 LGZ doub 216 n y C11 C16 LGZ sing 217 n y C12 C13 LGZ sing 218 n y C12 H9 LGZ sing 219 n n C13 C14 LGZ doub 220 n y C13 H10 LGZ sing 221 n n C14 C15 LGZ sing 222 n y C14 H11 LGZ sing 223 n n C15 C16 LGZ doub 224 n y C15 H12 LGZ sing 225 n n C16 H13 LGZ sing 226 n n C17 O18 LGZ doub 227 n n C17 C35 LGZ sing 228 n n C19 C20 LGZ sing 229 n n C19 C28 LGZ sing 230 n n C19 C35 LGZ sing 231 n n C19 H14 LGZ sing 232 n n C20 O1 LGZ sing 233 n n C20 C22 LGZ sing 234 n n C20 H15 LGZ sing 235 n n O1 C1 LGZ sing 236 n n C22 C23 LGZ sing 237 n n C22 H16 LGZ sing 238 n n C22 H17 LGZ sing 239 n n C23 C24 LGZ doub 240 n y C23 C28 LGZ sing 241 n y C24 C25 LGZ sing 242 n y C24 H18 LGZ sing 243 n n C25 C26 LGZ doub 244 n y C25 H19 LGZ sing 245 n n C26 C27 LGZ sing 246 n y C26 H20 LGZ sing 247 n n C27 C28 LGZ doub 248 n y C27 H21 LGZ sing 249 n n N29 C30 LGZ sing 250 n n N29 H22 LGZ sing 251 n n C30 C35 LGZ doub 252 n n C30 H23 LGZ sing 253 n n C36 C37 LGZ sing 254 n n C36 H24 LGZ sing 255 n n C36 H25 LGZ sing 256 n n C37 C38 LGZ doub 257 n y C37 C42 LGZ sing 258 n y C38 C39 LGZ sing 259 n y C38 H26 LGZ sing 260 n n C39 C40 LGZ doub 261 n y C39 H27 LGZ sing 262 n n C40 C41 LGZ sing 263 n y C40 H28 LGZ sing 264 n n C41 C42 LGZ doub 265 n y C41 H29 LGZ sing 266 n n C42 H30 LGZ sing 267 n n C44 C45 LGZ sing 268 n n C44 C48 LGZ sing 269 n n C44 H31 LGZ sing 270 n n C45 O46 LGZ sing 271 n n C45 H32 LGZ sing 272 n n C45 H33 LGZ sing 273 n n O46 C47 LGZ sing 274 n n C47 C48 LGZ sing 275 n n C47 H34 LGZ sing 276 n n C47 H35 LGZ sing 277 n n C48 H36 LGZ sing 278 n n C48 H37 LGZ sing 279 n n C1 N1 LGZ sing 280 n n C1 O2 LGZ doub 281 n n N1 H38 LGZ sing 282 n n N1 H39 LGZ sing 283 n n # _atom_sites.entry_id 1NPW _atom_sites.fract_transf_matrix[1][1] 0.017065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LGZ A 1 479 479 LGZ LGZ . D 3 HOH A 1 304 304 HOH WAT . D 3 HOH A 2 305 305 HOH WAT . D 3 HOH A 3 309 309 HOH WAT . D 3 HOH A 4 311 311 HOH WAT . D 3 HOH A 5 312 312 HOH WAT . D 3 HOH A 6 313 313 HOH WAT . D 3 HOH A 7 319 319 HOH WAT . D 3 HOH A 8 320 320 HOH WAT . D 3 HOH A 9 321 321 HOH WAT . D 3 HOH A 10 322 322 HOH WAT . D 3 HOH A 11 325 325 HOH WAT . D 3 HOH A 12 327 327 HOH WAT . D 3 HOH A 13 328 328 HOH WAT . D 3 HOH A 14 330 330 HOH WAT . D 3 HOH A 15 331 331 HOH WAT . D 3 HOH A 16 333 333 HOH WAT . D 3 HOH A 17 337 337 HOH WAT . D 3 HOH A 18 338 338 HOH WAT . D 3 HOH A 19 344 344 HOH WAT . D 3 HOH A 20 345 345 HOH WAT . D 3 HOH A 21 350 350 HOH WAT . D 3 HOH A 22 366 366 HOH WAT . D 3 HOH A 23 368 368 HOH WAT . D 3 HOH A 24 369 369 HOH WAT . D 3 HOH A 25 370 370 HOH WAT . D 3 HOH A 26 375 375 HOH WAT . D 3 HOH A 27 376 376 HOH WAT . D 3 HOH A 28 377 377 HOH WAT . D 3 HOH A 29 378 378 HOH WAT . D 3 HOH A 30 380 380 HOH WAT . D 3 HOH A 31 382 382 HOH WAT . D 3 HOH A 32 383 383 HOH WAT . D 3 HOH A 33 384 384 HOH WAT . D 3 HOH A 34 385 385 HOH WAT . D 3 HOH A 35 389 389 HOH WAT . D 3 HOH A 36 390 390 HOH WAT . D 3 HOH A 37 391 391 HOH WAT . D 3 HOH A 38 393 393 HOH WAT . D 3 HOH A 39 397 397 HOH WAT . D 3 HOH A 40 399 399 HOH WAT . D 3 HOH A 41 401 401 HOH WAT . D 3 HOH A 42 403 403 HOH WAT . D 3 HOH A 43 404 404 HOH WAT . D 3 HOH A 44 405 405 HOH WAT . D 3 HOH A 45 406 406 HOH WAT . D 3 HOH A 46 407 407 HOH WAT . D 3 HOH A 47 410 410 HOH WAT . D 3 HOH A 48 411 411 HOH WAT . D 3 HOH A 49 412 412 HOH WAT . D 3 HOH A 50 413 413 HOH WAT . D 3 HOH A 51 414 414 HOH WAT . D 3 HOH A 52 416 416 HOH WAT . D 3 HOH A 53 417 417 HOH WAT . D 3 HOH A 54 422 422 HOH WAT . D 3 HOH A 55 425 425 HOH WAT . E 3 HOH B 1 301 301 HOH WAT . E 3 HOH B 2 302 302 HOH WAT . E 3 HOH B 3 303 303 HOH WAT . E 3 HOH B 4 306 306 HOH WAT . E 3 HOH B 5 307 307 HOH WAT . E 3 HOH B 6 308 308 HOH WAT . E 3 HOH B 7 310 310 HOH WAT . E 3 HOH B 8 314 314 HOH WAT . E 3 HOH B 9 315 315 HOH WAT . E 3 HOH B 10 316 316 HOH WAT . E 3 HOH B 11 317 317 HOH WAT . E 3 HOH B 12 318 318 HOH WAT . E 3 HOH B 13 323 323 HOH WAT . E 3 HOH B 14 324 324 HOH WAT . E 3 HOH B 15 326 326 HOH WAT . E 3 HOH B 16 329 329 HOH WAT . E 3 HOH B 17 332 332 HOH WAT . E 3 HOH B 18 334 334 HOH WAT . E 3 HOH B 19 335 335 HOH WAT . E 3 HOH B 20 336 336 HOH WAT . E 3 HOH B 21 339 339 HOH WAT . E 3 HOH B 22 340 340 HOH WAT . E 3 HOH B 23 341 341 HOH WAT . E 3 HOH B 24 342 342 HOH WAT . E 3 HOH B 25 343 343 HOH WAT . E 3 HOH B 26 346 346 HOH WAT . E 3 HOH B 27 347 347 HOH WAT . E 3 HOH B 28 348 348 HOH WAT . E 3 HOH B 29 349 349 HOH WAT . E 3 HOH B 30 351 351 HOH WAT . E 3 HOH B 31 352 352 HOH WAT . E 3 HOH B 32 353 353 HOH WAT . E 3 HOH B 33 354 354 HOH WAT . E 3 HOH B 34 355 355 HOH WAT . E 3 HOH B 35 356 356 HOH WAT . E 3 HOH B 36 357 357 HOH WAT . E 3 HOH B 37 358 358 HOH WAT . E 3 HOH B 38 359 359 HOH WAT . E 3 HOH B 39 360 360 HOH WAT . E 3 HOH B 40 361 361 HOH WAT . E 3 HOH B 41 362 362 HOH WAT . E 3 HOH B 42 363 363 HOH WAT . E 3 HOH B 43 364 364 HOH WAT . E 3 HOH B 44 365 365 HOH WAT . E 3 HOH B 45 367 367 HOH WAT . E 3 HOH B 46 371 371 HOH WAT . E 3 HOH B 47 372 372 HOH WAT . E 3 HOH B 48 373 373 HOH WAT . E 3 HOH B 49 374 374 HOH WAT . E 3 HOH B 50 379 379 HOH WAT . E 3 HOH B 51 381 381 HOH WAT . E 3 HOH B 52 386 386 HOH WAT . E 3 HOH B 53 387 387 HOH WAT . E 3 HOH B 54 388 388 HOH WAT . E 3 HOH B 55 392 392 HOH WAT . E 3 HOH B 56 394 394 HOH WAT . E 3 HOH B 57 395 395 HOH WAT . E 3 HOH B 58 396 396 HOH WAT . E 3 HOH B 59 398 398 HOH WAT . E 3 HOH B 60 400 400 HOH WAT . E 3 HOH B 61 402 402 HOH WAT . E 3 HOH B 62 408 408 HOH WAT . E 3 HOH B 63 409 409 HOH WAT . E 3 HOH B 64 415 415 HOH WAT . E 3 HOH B 65 418 418 HOH WAT . E 3 HOH B 66 419 419 HOH WAT . E 3 HOH B 67 420 420 HOH WAT . E 3 HOH B 68 421 421 HOH WAT . E 3 HOH B 69 423 423 HOH WAT . E 3 HOH B 70 424 424 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 LGZ . . . C 2 16.359 20.23 4.858 1 15.5 ? O01 LGZ 479 A 1 HETATM 2 C C02 LGZ . . . C 2 15.289 20.848 5.226 1 13.13 ? C02 LGZ 479 A 1 HETATM 3 O O03 LGZ . . . C 2 14.215 20.333 5.151 1 13.36 ? O03 LGZ 479 A 1 HETATM 4 N NP4 LGZ . . . C 2 15.58 22.128 5.674 1 10.48 ? NP4 LGZ 479 A 1 HETATM 5 C C05 LGZ . . . C 2 14.683 23.101 6.36 1 8.7 ? C05 LGZ 479 A 1 HETATM 6 C C06 LGZ . . . C 2 13.969 24.087 5.414 1 11.42 ? C06 LGZ 479 A 1 HETATM 7 O O07 LGZ . . . C 2 14.965 24.822 4.679 1 6.76 ? O07 LGZ 479 A 1 HETATM 8 C C08 LGZ . . . C 2 13.208 23.351 4.234 1 11.03 ? C08 LGZ 479 A 1 HETATM 9 C C09 LGZ . . . C 2 11.912 24.124 3.833 1 12.12 ? C09 LGZ 479 A 1 HETATM 10 C C10 LGZ . . . C 2 11.27 23.545 2.554 1 8.74 ? C10 LGZ 479 A 1 HETATM 11 C C11 LGZ . . . C 2 9.845 24.049 2.393 1 11.73 ? C11 LGZ 479 A 1 HETATM 12 C C12 LGZ . . . C 2 9.655 25.268 1.757 1 9.26 ? C12 LGZ 479 A 1 HETATM 13 C C13 LGZ . . . C 2 8.414 25.791 1.575 1 7.94 ? C13 LGZ 479 A 1 HETATM 14 C C14 LGZ . . . C 2 7.339 25.114 2.052 1 10.13 ? C14 LGZ 479 A 1 HETATM 15 C C15 LGZ . . . C 2 7.524 23.888 2.686 1 10.15 ? C15 LGZ 479 A 1 HETATM 16 C C16 LGZ . . . C 2 8.764 23.348 2.87 1 7.6 ? C16 LGZ 479 A 1 HETATM 17 C C17 LGZ . . . C 2 10.904 23.989 4.999 1 14.14 ? C17 LGZ 479 A 1 HETATM 18 O O18 LGZ . . . C 2 10.542 22.929 5.451 1 16.28 ? O18 LGZ 479 A 1 HETATM 19 C C19 LGZ . . . C 2 9.525 25.5 6.535 1 12.32 ? C19 LGZ 479 A 1 HETATM 20 C C20 LGZ . . . C 2 8.189 26.12 6.024 1 16.48 ? C20 LGZ 479 A 1 HETATM 21 O O1 LGZ . . . C 2 8.576 27.284 5.255 1 23.58 ? O1 LGZ 479 A 1 HETATM 22 C C22 LGZ . . . C 2 7.444 26.654 7.26 1 13.81 ? C22 LGZ 479 A 1 HETATM 23 C C23 LGZ . . . C 2 8.637 27.161 8.01 1 17.53 ? C23 LGZ 479 A 1 HETATM 24 C C24 LGZ . . . C 2 8.632 28.111 9.031 1 14.8 ? C24 LGZ 479 A 1 HETATM 25 C C25 LGZ . . . C 2 9.822 28.37 9.688 1 9.57 ? C25 LGZ 479 A 1 HETATM 26 C C26 LGZ . . . C 2 11.007 27.71 9.318 1 6.67 ? C26 LGZ 479 A 1 HETATM 27 C C27 LGZ . . . C 2 11.011 26.775 8.276 1 12.55 ? C27 LGZ 479 A 1 HETATM 28 C C28 LGZ . . . C 2 9.817 26.507 7.623 1 14.37 ? C28 LGZ 479 A 1 HETATM 29 N N29 LGZ . . . C 2 12.173 25.564 3.821 1 12.21 ? N29 LGZ 479 A 1 HETATM 30 C C30 LGZ . . . C 2 11.27 26.157 4.797 1 4.97 ? C30 LGZ 479 A 1 HETATM 31 C C35 LGZ . . . C 2 10.556 25.287 5.478 1 9.38 ? C35 LGZ 479 A 1 HETATM 32 C C36 LGZ . . . C 2 15.481 23.75 7.49 1 12.57 ? C36 LGZ 479 A 1 HETATM 33 C C37 LGZ . . . C 2 16.046 22.646 8.405 1 11.62 ? C37 LGZ 479 A 1 HETATM 34 C C38 LGZ . . . C 2 15.137 21.896 9.169 1 15.84 ? C38 LGZ 479 A 1 HETATM 35 C C39 LGZ . . . C 2 15.579 20.792 9.916 1 18.36 ? C39 LGZ 479 A 1 HETATM 36 C C40 LGZ . . . C 2 16.933 20.434 9.964 1 10.7 ? C40 LGZ 479 A 1 HETATM 37 C C41 LGZ . . . C 2 17.857 21.214 9.259 1 14.24 ? C41 LGZ 479 A 1 HETATM 38 C C42 LGZ . . . C 2 17.412 22.31 8.481 1 15.23 ? C42 LGZ 479 A 1 HETATM 39 C C44 LGZ . . . C 2 16.397 19.188 3.924 1 14.95 ? C44 LGZ 479 A 1 HETATM 40 C C45 LGZ . . . C 2 17.558 18.269 3.874 1 14.02 ? C45 LGZ 479 A 1 HETATM 41 O O46 LGZ . . . C 2 17.844 18.428 2.515 1 16.83 ? O46 LGZ 479 A 1 HETATM 42 C C47 LGZ . . . C 2 16.614 18.41 1.753 1 14.27 ? C47 LGZ 479 A 1 HETATM 43 C C48 LGZ . . . C 2 15.514 18.835 2.758 1 13.64 ? C48 LGZ 479 A 1 HETATM 44 C C1 LGZ . . . C 2 7.818 27.918 4.365 1 19.6 ? C1 LGZ 479 A 1 HETATM 45 N N1 LGZ . . . C 2 6.548 27.557 4.316 1 17.33 ? N1 LGZ 479 A 1 HETATM 46 O O2 LGZ . . . C 2 8.249 28.863 3.762 1 19.52 ? O2 LGZ 479 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 432 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #