data_1NQH # _model_server_result.job_id 9ord5yfos9AKdizsvNZjJA _model_server_result.datetime_utc '2024-11-07 06:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":597}' # _entry.id 1NQH # _exptl.entry_id 1NQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NQH _cell.length_a 81.687 _cell.length_b 81.687 _cell.length_c 225.814 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 179 A ASP 179 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc2 A OD1 ASP 179 A ASP 179 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc3 A NE2 GLN 191 A GLN 191 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc4 A O ASP 193 A ASP 193 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 A OD1 ASP 193 A ASP 193 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.252 ? metalc ? metalc6 A OD2 ASP 193 A ASP 193 1_555 C CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.119 ? metalc ? metalc7 A OD1 ASP 193 A ASP 193 1_555 C CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc8 A OD1 ASP 195 A ASP 195 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc9 A OD2 ASP 195 A ASP 195 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 A OD1 ASP 195 A ASP 195 1_555 C CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc11 A O TYR 229 A TYR 229 1_555 C CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc12 A OD2 ASP 230 A ASP 230 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc13 A OD1 ASP 230 A ASP 230 1_555 B CA CA . A CA 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.297 ? metalc ? metalc14 A OD1 ASP 230 A ASP 230 1_555 C CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc15 A OD1 ASP 241 A ASP 241 1_555 C CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc16 A OE1 GLU 378 A GLU 378 1_555 D CA CA . A CA 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc17 A OE2 GLU 378 A GLU 378 1_555 D CA CA . A CA 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc18 A OE2 GLU 381 A GLU 381 1_555 D CA CA . A CA 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.335 ? metalc ? metalc19 A OD1 ASP 411 A ASP 411 1_555 E CA CA . A CA 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NQH _atom_sites.fract_transf_matrix[1][1] 0.012242 _atom_sites.fract_transf_matrix[1][2] 0.007068 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 595 1 CA CA . C 2 CA A 1 596 2 CA CA . D 2 CA A 1 597 3 CA CA . E 2 CA A 1 598 4 CA CA . F 3 CNC A 1 701 701 CNC CNC . G 4 C8E A 1 800 800 C8E C8E . H 4 C8E A 1 801 801 C8E C8E . I 4 C8E A 1 802 802 C8E C8E . J 4 C8E A 1 803 803 C8E C8E . K 4 C8E A 1 804 804 C8E C8E . L 4 C8E A 1 805 805 C8E C8E . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -4.835 _atom_site.Cartn_y 68.579 _atom_site.Cartn_z 52.704 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 597 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #