data_1NRG # _model_server_result.job_id Trp58hrvrTKi1O5WGQhMvQ _model_server_result.datetime_utc '2025-03-06 10:14:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1NRG # _exptl.entry_id 1NRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NRG _cell.length_a 82.747 _cell.length_b 82.747 _cell.length_c 59.327 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 39.551333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 72 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 72 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 360 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 1NRG _atom_sites.fract_transf_matrix[1][1] 0.012085 _atom_sites.fract_transf_matrix[1][2] 0.006977 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 340 340 PO4 PO4 . C 3 FMN A 1 300 300 FMN FMN . D 4 PLP A 1 320 320 PLP PLP . E 5 BME A 1 360 360 BME SEO . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 404 HOH HOH . F 6 HOH A 5 405 405 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 407 HOH HOH . F 6 HOH A 8 408 408 HOH HOH . F 6 HOH A 9 409 409 HOH HOH . F 6 HOH A 10 410 410 HOH HOH . F 6 HOH A 11 411 411 HOH HOH . F 6 HOH A 12 412 412 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 414 HOH HOH . F 6 HOH A 15 415 415 HOH HOH . F 6 HOH A 16 416 416 HOH HOH . F 6 HOH A 17 417 417 HOH HOH . F 6 HOH A 18 418 418 HOH HOH . F 6 HOH A 19 419 419 HOH HOH . F 6 HOH A 20 420 420 HOH HOH . F 6 HOH A 21 421 421 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 424 HOH HOH . F 6 HOH A 25 425 425 HOH HOH . F 6 HOH A 26 426 426 HOH HOH . F 6 HOH A 27 427 427 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . F 6 HOH A 38 438 438 HOH HOH . F 6 HOH A 39 439 439 HOH HOH . F 6 HOH A 40 440 440 HOH HOH . F 6 HOH A 41 441 441 HOH HOH . F 6 HOH A 42 442 442 HOH HOH . F 6 HOH A 43 443 443 HOH HOH . F 6 HOH A 44 444 444 HOH HOH . F 6 HOH A 45 445 445 HOH HOH . F 6 HOH A 46 446 446 HOH HOH . F 6 HOH A 47 447 447 HOH HOH . F 6 HOH A 48 448 448 HOH HOH . F 6 HOH A 49 449 449 HOH HOH . F 6 HOH A 50 450 450 HOH HOH . F 6 HOH A 51 451 451 HOH HOH . F 6 HOH A 52 452 452 HOH HOH . F 6 HOH A 53 453 453 HOH HOH . F 6 HOH A 54 454 454 HOH HOH . F 6 HOH A 55 456 456 HOH HOH . F 6 HOH A 56 457 457 HOH HOH . F 6 HOH A 57 458 458 HOH HOH . F 6 HOH A 58 459 459 HOH HOH . F 6 HOH A 59 460 460 HOH HOH . F 6 HOH A 60 461 461 HOH HOH . F 6 HOH A 61 462 462 HOH HOH . F 6 HOH A 62 463 463 HOH HOH . F 6 HOH A 63 464 464 HOH HOH . F 6 HOH A 64 465 465 HOH HOH . F 6 HOH A 65 466 466 HOH HOH . F 6 HOH A 66 467 467 HOH HOH . F 6 HOH A 67 468 468 HOH HOH . F 6 HOH A 68 469 469 HOH HOH . F 6 HOH A 69 470 470 HOH HOH . F 6 HOH A 70 471 471 HOH HOH . F 6 HOH A 71 472 472 HOH HOH . F 6 HOH A 72 473 473 HOH HOH . F 6 HOH A 73 474 474 HOH HOH . F 6 HOH A 74 475 475 HOH HOH . F 6 HOH A 75 476 476 HOH HOH . F 6 HOH A 76 477 477 HOH HOH . F 6 HOH A 77 478 478 HOH HOH . F 6 HOH A 78 479 479 HOH HOH . F 6 HOH A 79 480 480 HOH HOH . F 6 HOH A 80 481 481 HOH HOH . F 6 HOH A 81 482 482 HOH HOH . F 6 HOH A 82 483 483 HOH HOH . F 6 HOH A 83 484 484 HOH HOH . F 6 HOH A 84 485 485 HOH HOH . F 6 HOH A 85 486 486 HOH HOH . F 6 HOH A 86 487 487 HOH HOH . F 6 HOH A 87 488 488 HOH HOH . F 6 HOH A 88 489 489 HOH HOH . F 6 HOH A 89 490 490 HOH HOH . F 6 HOH A 90 491 491 HOH HOH . F 6 HOH A 91 492 492 HOH HOH . F 6 HOH A 92 493 493 HOH HOH . F 6 HOH A 93 494 494 HOH HOH . F 6 HOH A 94 495 495 HOH HOH . F 6 HOH A 95 496 496 HOH HOH . F 6 HOH A 96 497 497 HOH HOH . F 6 HOH A 97 498 498 HOH HOH . F 6 HOH A 98 499 499 HOH HOH . F 6 HOH A 99 500 500 HOH HOH . F 6 HOH A 100 501 501 HOH HOH . F 6 HOH A 101 502 502 HOH HOH . F 6 HOH A 102 503 503 HOH HOH . F 6 HOH A 103 504 504 HOH HOH . F 6 HOH A 104 505 505 HOH HOH . F 6 HOH A 105 506 506 HOH HOH . F 6 HOH A 106 507 507 HOH HOH . F 6 HOH A 107 508 508 HOH HOH . F 6 HOH A 108 509 509 HOH HOH . F 6 HOH A 109 510 510 HOH HOH . F 6 HOH A 110 511 511 HOH HOH . F 6 HOH A 111 512 512 HOH HOH . F 6 HOH A 112 513 513 HOH HOH . F 6 HOH A 113 514 514 HOH HOH . F 6 HOH A 114 515 515 HOH HOH . F 6 HOH A 115 516 516 HOH HOH . F 6 HOH A 116 517 517 HOH HOH . F 6 HOH A 117 518 518 HOH HOH . F 6 HOH A 118 519 519 HOH HOH . F 6 HOH A 119 520 520 HOH HOH . F 6 HOH A 120 521 521 HOH HOH . F 6 HOH A 121 522 522 HOH HOH . F 6 HOH A 122 523 523 HOH HOH . F 6 HOH A 123 524 524 HOH HOH . F 6 HOH A 124 525 525 HOH HOH . F 6 HOH A 125 526 526 HOH HOH . F 6 HOH A 126 527 527 HOH HOH . F 6 HOH A 127 528 528 HOH HOH . F 6 HOH A 128 529 529 HOH HOH . F 6 HOH A 129 530 530 HOH HOH . F 6 HOH A 130 531 531 HOH HOH . F 6 HOH A 131 532 532 HOH HOH . F 6 HOH A 132 533 533 HOH HOH . F 6 HOH A 133 534 534 HOH HOH . F 6 HOH A 134 535 535 HOH HOH . F 6 HOH A 135 536 536 HOH HOH . F 6 HOH A 136 537 537 HOH HOH . F 6 HOH A 137 538 538 HOH HOH . F 6 HOH A 138 539 539 HOH HOH . F 6 HOH A 139 540 540 HOH HOH . F 6 HOH A 140 541 541 HOH HOH . F 6 HOH A 141 542 542 HOH HOH . F 6 HOH A 142 543 543 HOH HOH . F 6 HOH A 143 544 544 HOH HOH . F 6 HOH A 144 545 545 HOH HOH . F 6 HOH A 145 546 546 HOH HOH . F 6 HOH A 146 547 547 HOH HOH . F 6 HOH A 147 548 548 HOH HOH . F 6 HOH A 148 549 549 HOH HOH . F 6 HOH A 149 550 550 HOH HOH . F 6 HOH A 150 551 551 HOH HOH . F 6 HOH A 151 552 552 HOH HOH . F 6 HOH A 152 553 553 HOH HOH . F 6 HOH A 153 554 554 HOH HOH . F 6 HOH A 154 555 555 HOH HOH . F 6 HOH A 155 556 556 HOH HOH . F 6 HOH A 156 557 557 HOH HOH . F 6 HOH A 157 558 558 HOH HOH . F 6 HOH A 158 559 559 HOH HOH . F 6 HOH A 159 560 560 HOH HOH . F 6 HOH A 160 561 561 HOH HOH . F 6 HOH A 161 562 562 HOH HOH . F 6 HOH A 162 563 563 HOH HOH . F 6 HOH A 163 564 564 HOH HOH . F 6 HOH A 164 565 565 HOH HOH . F 6 HOH A 165 566 566 HOH HOH . F 6 HOH A 166 567 567 HOH HOH . F 6 HOH A 167 568 568 HOH HOH . F 6 HOH A 168 569 569 HOH HOH . F 6 HOH A 169 570 570 HOH HOH . F 6 HOH A 170 571 571 HOH HOH . F 6 HOH A 171 572 572 HOH HOH . F 6 HOH A 172 573 573 HOH HOH . F 6 HOH A 173 574 574 HOH HOH . F 6 HOH A 174 575 575 HOH HOH . F 6 HOH A 175 576 576 HOH HOH . F 6 HOH A 176 577 577 HOH HOH . F 6 HOH A 177 578 578 HOH HOH . F 6 HOH A 178 579 579 HOH HOH . F 6 HOH A 179 580 580 HOH HOH . F 6 HOH A 180 581 581 HOH HOH . F 6 HOH A 181 582 582 HOH HOH . F 6 HOH A 182 583 583 HOH HOH . F 6 HOH A 183 584 584 HOH HOH . F 6 HOH A 184 585 585 HOH HOH . F 6 HOH A 185 586 586 HOH HOH . F 6 HOH A 186 587 587 HOH HOH . F 6 HOH A 187 588 588 HOH HOH . F 6 HOH A 188 589 589 HOH HOH . F 6 HOH A 189 590 590 HOH HOH . F 6 HOH A 190 591 591 HOH HOH . F 6 HOH A 191 592 592 HOH HOH . F 6 HOH A 192 593 593 HOH HOH . F 6 HOH A 193 594 594 HOH HOH . F 6 HOH A 194 595 595 HOH HOH . F 6 HOH A 195 596 596 HOH HOH . F 6 HOH A 196 597 597 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 26.949 13.095 20.193 1 26.83 ? N1 FMN 300 A 1 HETATM 2 C C2 FMN . . . C 3 26.313 13.641 21.217 1 26.46 ? C2 FMN 300 A 1 HETATM 3 O O2 FMN . . . C 3 25.344 14.308 21.126 1 27.65 ? O2 FMN 300 A 1 HETATM 4 N N3 FMN . . . C 3 26.814 13.469 22.533 1 25.81 ? N3 FMN 300 A 1 HETATM 5 C C4 FMN . . . C 3 28.018 12.76 22.827 1 29.3 ? C4 FMN 300 A 1 HETATM 6 O O4 FMN . . . C 3 28.344 12.657 24.01 1 32.15 ? O4 FMN 300 A 1 HETATM 7 C C4A FMN . . . C 3 28.721 12.19 21.723 1 31.16 ? C4A FMN 300 A 1 HETATM 8 N N5 FMN . . . C 3 29.846 11.47 21.825 1 31.42 ? N5 FMN 300 A 1 HETATM 9 C C5A FMN . . . C 3 30.432 10.84 20.782 1 32.24 ? C5A FMN 300 A 1 HETATM 10 C C6 FMN . . . C 3 31.546 9.99 20.996 1 27.27 ? C6 FMN 300 A 1 HETATM 11 C C7 FMN . . . C 3 32.094 9.281 19.971 1 22.96 ? C7 FMN 300 A 1 HETATM 12 C C7M FMN . . . C 3 33.271 8.362 20.231 1 28.9 ? C7M FMN 300 A 1 HETATM 13 C C8 FMN . . . C 3 31.572 9.38 18.611 1 32.96 ? C8 FMN 300 A 1 HETATM 14 C C8M FMN . . . C 3 32.131 8.63 17.43 1 35.81 ? C8M FMN 300 A 1 HETATM 15 C C9 FMN . . . C 3 30.495 10.203 18.344 1 29.97 ? C9 FMN 300 A 1 HETATM 16 C C9A FMN . . . C 3 29.864 10.97 19.396 1 30.12 ? C9A FMN 300 A 1 HETATM 17 N N10 FMN . . . C 3 28.681 11.792 19.292 1 31.08 ? N10 FMN 300 A 1 HETATM 18 C C10 FMN . . . C 3 28.071 12.393 20.342 1 29.45 ? C10 FMN 300 A 1 HETATM 19 C C1' FMN . . . C 3 28.028 11.971 17.913 1 26.85 ? C1' FMN 300 A 1 HETATM 20 C C2' FMN . . . C 3 26.87 10.885 17.728 1 26.77 ? C2' FMN 300 A 1 HETATM 21 O O2' FMN . . . C 3 27.425 9.558 17.448 1 22.85 ? O2' FMN 300 A 1 HETATM 22 C C3' FMN . . . C 3 25.867 11.339 16.702 1 33.43 ? C3' FMN 300 A 1 HETATM 23 O O3' FMN . . . C 3 26.535 11.681 15.484 1 29.43 ? O3' FMN 300 A 1 HETATM 24 C C4' FMN . . . C 3 25.058 12.586 17.155 1 40.18 ? C4' FMN 300 A 1 HETATM 25 O O4' FMN . . . C 3 24.74 12.638 18.56 1 36.55 ? O4' FMN 300 A 1 HETATM 26 C C5' FMN . . . C 3 23.748 12.641 16.333 1 25.8 ? C5' FMN 300 A 1 HETATM 27 O O5' FMN . . . C 3 22.962 11.29 16.583 1 23.39 ? O5' FMN 300 A 1 HETATM 28 P P FMN . . . C 3 21.401 11.186 16.282 1 27.52 ? P FMN 300 A 1 HETATM 29 O O1P FMN . . . C 3 21.046 9.686 16.447 1 27.67 ? O1P FMN 300 A 1 HETATM 30 O O2P FMN . . . C 3 20.643 11.988 17.228 1 25.33 ? O2P FMN 300 A 1 HETATM 31 O O3P FMN . . . C 3 21.286 11.725 14.861 1 28.03 ? O3P FMN 300 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #