data_1NS9
#
_model_server_result.job_id            W8wK1uX-meKucLhrtcigoQ 
_model_server_result.datetime_utc      '2024-11-16 04:56:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ns9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":147}' 
#
_entry.id    1NS9 
#
_exptl.entry_id    1NS9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.9 
_cell.angle_gamma         90 
_cell.entry_id            1NS9 
_cell.length_a            108.4 
_cell.length_b            63.2 
_cell.length_c            54.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NS9 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 C FE HEM . A HEM 142 1_555 E O HOH . A HOH 5150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc4 D FE HEM . B HEM 147 1_555 F O HOH . B HOH 9150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1NS9 
_atom_sites.fract_transf_matrix[1][1]    0.009225 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003523 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 142 142 HEM HEM . 
D 3 HEM B 1 147 147 HEM HEM . 
E 4 HOH A 1 201 201 HOH HOH . 
E 4 HOH A 2 202 202 HOH HOH . 
E 4 HOH A 3 203 203 HOH HOH . 
E 4 HOH A 4 204 204 HOH HOH . 
E 4 HOH A 5 205 205 HOH HOH . 
E 4 HOH A 6 206 206 HOH HOH . 
E 4 HOH A 7 207 207 HOH HOH . 
E 4 HOH A 8 208 208 HOH HOH . 
E 4 HOH A 9 218 218 HOH HOH . 
E 4 HOH A 10 219 219 HOH HOH . 
E 4 HOH A 11 220 220 HOH HOH . 
E 4 HOH A 12 221 221 HOH HOH . 
E 4 HOH A 13 222 222 HOH HOH . 
E 4 HOH A 14 223 223 HOH HOH . 
E 4 HOH A 15 224 224 HOH HOH . 
E 4 HOH A 16 227 227 HOH HOH . 
E 4 HOH A 17 228 228 HOH HOH . 
E 4 HOH A 18 229 229 HOH HOH . 
E 4 HOH A 19 230 230 HOH HOH . 
E 4 HOH A 20 240 240 HOH HOH . 
E 4 HOH A 21 241 241 HOH HOH . 
E 4 HOH A 22 242 242 HOH HOH . 
E 4 HOH A 23 243 243 HOH HOH . 
E 4 HOH A 24 244 244 HOH HOH . 
E 4 HOH A 25 246 246 HOH HOH . 
E 4 HOH A 26 247 247 HOH HOH . 
E 4 HOH A 27 248 248 HOH HOH . 
E 4 HOH A 28 254 254 HOH HOH . 
E 4 HOH A 29 255 255 HOH HOH . 
E 4 HOH A 30 256 256 HOH HOH . 
E 4 HOH A 31 257 257 HOH HOH . 
E 4 HOH A 32 258 258 HOH HOH . 
E 4 HOH A 33 259 259 HOH HOH . 
E 4 HOH A 34 260 260 HOH HOH . 
E 4 HOH A 35 261 261 HOH HOH . 
E 4 HOH A 36 262 262 HOH HOH . 
E 4 HOH A 37 265 265 HOH HOH . 
E 4 HOH A 38 266 266 HOH HOH . 
E 4 HOH A 39 267 267 HOH HOH . 
E 4 HOH A 40 268 268 HOH HOH . 
E 4 HOH A 41 269 269 HOH HOH . 
E 4 HOH A 42 270 270 HOH HOH . 
E 4 HOH A 43 273 273 HOH HOH . 
E 4 HOH A 44 274 274 HOH HOH . 
E 4 HOH A 45 280 280 HOH HOH . 
E 4 HOH A 46 281 281 HOH HOH . 
E 4 HOH A 47 284 284 HOH HOH . 
E 4 HOH A 48 288 288 HOH HOH . 
E 4 HOH A 49 5150 5150 HOH HOH . 
F 4 HOH B 1 209 209 HOH HOH . 
F 4 HOH B 2 210 210 HOH HOH . 
F 4 HOH B 3 211 211 HOH HOH . 
F 4 HOH B 4 212 212 HOH HOH . 
F 4 HOH B 5 213 213 HOH HOH . 
F 4 HOH B 6 214 214 HOH HOH . 
F 4 HOH B 7 215 215 HOH HOH . 
F 4 HOH B 8 216 216 HOH HOH . 
F 4 HOH B 9 217 217 HOH HOH . 
F 4 HOH B 10 225 225 HOH HOH . 
F 4 HOH B 11 226 226 HOH HOH . 
F 4 HOH B 12 231 231 HOH HOH . 
F 4 HOH B 13 232 232 HOH HOH . 
F 4 HOH B 14 233 233 HOH HOH . 
F 4 HOH B 15 234 234 HOH HOH . 
F 4 HOH B 16 235 235 HOH HOH . 
F 4 HOH B 17 236 236 HOH HOH . 
F 4 HOH B 18 237 237 HOH HOH . 
F 4 HOH B 19 238 238 HOH HOH . 
F 4 HOH B 20 239 239 HOH HOH . 
F 4 HOH B 21 245 245 HOH HOH . 
F 4 HOH B 22 249 249 HOH HOH . 
F 4 HOH B 23 250 250 HOH HOH . 
F 4 HOH B 24 251 251 HOH HOH . 
F 4 HOH B 25 252 252 HOH HOH . 
F 4 HOH B 26 253 253 HOH HOH . 
F 4 HOH B 27 263 263 HOH HOH . 
F 4 HOH B 28 264 264 HOH HOH . 
F 4 HOH B 29 271 271 HOH HOH . 
F 4 HOH B 30 272 272 HOH HOH . 
F 4 HOH B 31 275 275 HOH HOH . 
F 4 HOH B 32 276 276 HOH HOH . 
F 4 HOH B 33 277 277 HOH HOH . 
F 4 HOH B 34 278 278 HOH HOH . 
F 4 HOH B 35 279 279 HOH HOH . 
F 4 HOH B 36 282 282 HOH HOH . 
F 4 HOH B 37 283 283 HOH HOH . 
F 4 HOH B 38 285 285 HOH HOH . 
F 4 HOH B 39 286 286 HOH HOH . 
F 4 HOH B 40 287 287 HOH HOH . 
F 4 HOH B 41 9150 9150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 -12.962 9.824 15.357 1 20.76 ? CHA HEM 147 B 1 
HETATM 2 C CHB HEM . . . D 3 -13.695 11.108 10.745 1 21.59 ? CHB HEM 147 B 1 
HETATM 3 C CHC HEM . . . D 3 -11.145 7.265 9.316 1 17.68 ? CHC HEM 147 B 1 
HETATM 4 C CHD HEM . . . D 3 -10.597 5.815 13.87 1 20.71 ? CHD HEM 147 B 1 
HETATM 5 C C1A HEM . . . D 3 -13.422 10.478 14.239 1 22.05 ? C1A HEM 147 B 1 
HETATM 6 C C2A HEM . . . D 3 -14.342 11.602 14.233 1 24.57 ? C2A HEM 147 B 1 
HETATM 7 C C3A HEM . . . D 3 -14.545 11.954 12.965 1 22.57 ? C3A HEM 147 B 1 
HETATM 8 C C4A HEM . . . D 3 -13.767 11.069 12.115 1 20.71 ? C4A HEM 147 B 1 
HETATM 9 C CMA HEM . . . D 3 -15.465 13.089 12.484 1 23.45 ? CMA HEM 147 B 1 
HETATM 10 C CAA HEM . . . D 3 -14.983 12.254 15.485 1 29.43 ? CAA HEM 147 B 1 
HETATM 11 C CBA HEM . . . D 3 -14.028 13.309 16.02 1 34.18 ? CBA HEM 147 B 1 
HETATM 12 C CGA HEM . . . D 3 -14.207 13.51 17.508 1 39.48 ? CGA HEM 147 B 1 
HETATM 13 O O1A HEM . . . D 3 -13.951 12.556 18.314 1 43.15 ? O1A HEM 147 B 1 
HETATM 14 O O2A HEM . . . D 3 -14.593 14.652 17.878 1 41.66 ? O2A HEM 147 B 1 
HETATM 15 C C1B HEM . . . D 3 -13.019 10.215 9.951 1 20.74 ? C1B HEM 147 B 1 
HETATM 16 C C2B HEM . . . D 3 -12.841 10.295 8.517 1 20.19 ? C2B HEM 147 B 1 
HETATM 17 C C3B HEM . . . D 3 -12.155 9.217 8.132 1 20.92 ? C3B HEM 147 B 1 
HETATM 18 C C4B HEM . . . D 3 -11.821 8.45 9.312 1 19.12 ? C4B HEM 147 B 1 
HETATM 19 C CMB HEM . . . D 3 -13.44 11.392 7.619 1 22.39 ? CMB HEM 147 B 1 
HETATM 20 C CAB HEM . . . D 3 -11.709 8.843 6.704 1 23.11 ? CAB HEM 147 B 1 
HETATM 21 C CBB HEM . . . D 3 -12.56 8.959 5.701 1 27.77 ? CBB HEM 147 B 1 
HETATM 22 C C1C HEM . . . D 3 -10.817 6.522 10.413 1 18.39 ? C1C HEM 147 B 1 
HETATM 23 C C2C HEM . . . D 3 -10.156 5.231 10.377 1 18.1 ? C2C HEM 147 B 1 
HETATM 24 C C3C HEM . . . D 3 -9.991 4.838 11.644 1 18.68 ? C3C HEM 147 B 1 
HETATM 25 C C4C HEM . . . D 3 -10.559 5.856 12.503 1 18.47 ? C4C HEM 147 B 1 
HETATM 26 C CMC HEM . . . D 3 -9.722 4.525 9.072 1 19.27 ? CMC HEM 147 B 1 
HETATM 27 C CAC HEM . . . D 3 -9.315 3.568 12.188 1 20.49 ? CAC HEM 147 B 1 
HETATM 28 C CBC HEM . . . D 3 -9.339 2.419 11.514 1 22.5 ? CBC HEM 147 B 1 
HETATM 29 C C1D HEM . . . D 3 -11.218 6.721 14.68 1 20.23 ? C1D HEM 147 B 1 
HETATM 30 C C2D HEM . . . D 3 -11.398 6.555 16.103 1 22.3 ? C2D HEM 147 B 1 
HETATM 31 C C3D HEM . . . D 3 -12.127 7.811 16.562 1 22.75 ? C3D HEM 147 B 1 
HETATM 32 C C4D HEM . . . D 3 -12.331 8.603 15.379 1 21.29 ? C4D HEM 147 B 1 
HETATM 33 C CMD HEM . . . D 3 -10.932 5.384 16.982 1 24.18 ? CMD HEM 147 B 1 
HETATM 34 C CAD HEM . . . D 3 -12.564 8.162 18.002 1 25.31 ? CAD HEM 147 B 1 
HETATM 35 C CBD HEM . . . D 3 -13.876 7.442 18.293 1 30.51 ? CBD HEM 147 B 1 
HETATM 36 C CGD HEM . . . D 3 -14.267 7.678 19.731 1 33.97 ? CGD HEM 147 B 1 
HETATM 37 O O1D HEM . . . D 3 -13.996 6.794 20.579 1 38.18 ? O1D HEM 147 B 1 
HETATM 38 O O2D HEM . . . D 3 -14.835 8.752 20.024 1 37.77 ? O2D HEM 147 B 1 
HETATM 39 N NA HEM . . . D 3 -13.097 10.184 12.93 1 20.54 ? NA HEM 147 B 1 
HETATM 40 N NB HEM . . . D 3 -12.37 9.085 10.403 1 18.94 ? NB HEM 147 B 1 
HETATM 41 N NC HEM . . . D 3 -11.046 6.869 11.726 1 18.8 ? NC HEM 147 B 1 
HETATM 42 N ND HEM . . . D 3 -11.786 7.936 14.288 1 19.87 ? ND HEM 147 B 1 
HETATM 43 FE FE HEM . . . D 3 -12.006 8.479 12.306 1 19.25 ? FE HEM 147 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#