data_1NSF # _model_server_result.job_id 3cbNNWAqu-DVLP6v0r_Kow _model_server_result.datetime_utc '2024-12-04 16:42:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nsf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":858}' # _entry.id 1NSF # _exptl.entry_id 1NSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NSF _cell.length_a 115.996 _cell.length_b 115.996 _cell.length_c 44.13 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 77 A THR 550 1_555 B MG MG . A MG 859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 C O1G ATP . A ATP 858 1_555 B MG MG . A MG 859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 C O1B ATP . A ATP 858 1_555 B MG MG . A MG 859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 B MG MG . A MG 859 1_555 D O HOH . A HOH 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 B MG MG . A MG 859 1_555 D O HOH . A HOH 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 B MG MG . A MG 859 1_555 D O HOH . A HOH 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1NSF _atom_sites.fract_transf_matrix[1][1] 0.008621 _atom_sites.fract_transf_matrix[1][2] 0.004977 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 859 859 MG MG . C 3 ATP A 1 858 858 ATP ATP . D 4 HOH A 1 860 736 HOH HOH . D 4 HOH A 2 861 737 HOH HOH . D 4 HOH A 3 862 738 HOH HOH . D 4 HOH A 4 863 739 HOH HOH . D 4 HOH A 5 864 740 HOH HOH . D 4 HOH A 6 865 741 HOH HOH . D 4 HOH A 7 866 742 HOH HOH . D 4 HOH A 8 867 743 HOH HOH . D 4 HOH A 9 868 744 HOH HOH . D 4 HOH A 10 869 745 HOH HOH . D 4 HOH A 11 870 746 HOH HOH . D 4 HOH A 12 871 747 HOH HOH . D 4 HOH A 13 872 748 HOH HOH . D 4 HOH A 14 873 749 HOH HOH . D 4 HOH A 15 874 750 HOH HOH . D 4 HOH A 16 875 751 HOH HOH . D 4 HOH A 17 876 752 HOH HOH . D 4 HOH A 18 877 753 HOH HOH . D 4 HOH A 19 878 754 HOH HOH . D 4 HOH A 20 879 755 HOH HOH . D 4 HOH A 21 880 756 HOH HOH . D 4 HOH A 22 881 757 HOH HOH . D 4 HOH A 23 882 758 HOH HOH . D 4 HOH A 24 883 759 HOH HOH . D 4 HOH A 25 884 760 HOH HOH . D 4 HOH A 26 885 761 HOH HOH . D 4 HOH A 27 886 762 HOH HOH . D 4 HOH A 28 887 763 HOH HOH . D 4 HOH A 29 888 764 HOH HOH . D 4 HOH A 30 889 765 HOH HOH . D 4 HOH A 31 890 766 HOH HOH . D 4 HOH A 32 891 767 HOH HOH . D 4 HOH A 33 892 768 HOH HOH . D 4 HOH A 34 893 769 HOH HOH . D 4 HOH A 35 894 770 HOH HOH . D 4 HOH A 36 895 771 HOH HOH . D 4 HOH A 37 896 772 HOH HOH . D 4 HOH A 38 897 773 HOH HOH . D 4 HOH A 39 898 774 HOH HOH . D 4 HOH A 40 899 775 HOH HOH . D 4 HOH A 41 900 776 HOH HOH . D 4 HOH A 42 901 777 HOH HOH . D 4 HOH A 43 902 778 HOH HOH . D 4 HOH A 44 903 779 HOH HOH . D 4 HOH A 45 904 780 HOH HOH . D 4 HOH A 46 905 781 HOH HOH . D 4 HOH A 47 906 782 HOH HOH . D 4 HOH A 48 907 783 HOH HOH . D 4 HOH A 49 908 784 HOH HOH . D 4 HOH A 50 909 785 HOH HOH . D 4 HOH A 51 910 786 HOH HOH . D 4 HOH A 52 911 787 HOH HOH . D 4 HOH A 53 912 788 HOH HOH . D 4 HOH A 54 913 789 HOH HOH . D 4 HOH A 55 914 790 HOH HOH . D 4 HOH A 56 915 791 HOH HOH . D 4 HOH A 57 916 792 HOH HOH . D 4 HOH A 58 917 793 HOH HOH . D 4 HOH A 59 918 794 HOH HOH . D 4 HOH A 60 919 795 HOH HOH . D 4 HOH A 61 920 796 HOH HOH . D 4 HOH A 62 921 797 HOH HOH . D 4 HOH A 63 922 798 HOH HOH . D 4 HOH A 64 923 799 HOH HOH . D 4 HOH A 65 924 800 HOH HOH . D 4 HOH A 66 925 801 HOH HOH . D 4 HOH A 67 926 802 HOH HOH . D 4 HOH A 68 927 803 HOH HOH . D 4 HOH A 69 928 804 HOH HOH . D 4 HOH A 70 929 805 HOH HOH . D 4 HOH A 71 930 806 HOH HOH . D 4 HOH A 72 931 807 HOH HOH . D 4 HOH A 73 932 808 HOH HOH . D 4 HOH A 74 933 809 HOH HOH . D 4 HOH A 75 934 810 HOH HOH . D 4 HOH A 76 935 811 HOH HOH . D 4 HOH A 77 936 812 HOH HOH . D 4 HOH A 78 937 813 HOH HOH . D 4 HOH A 79 938 814 HOH HOH . D 4 HOH A 80 939 815 HOH HOH . D 4 HOH A 81 940 816 HOH HOH . D 4 HOH A 82 941 817 HOH HOH . D 4 HOH A 83 942 818 HOH HOH . D 4 HOH A 84 943 819 HOH HOH . D 4 HOH A 85 944 820 HOH HOH . D 4 HOH A 86 945 821 HOH HOH . D 4 HOH A 87 946 822 HOH HOH . D 4 HOH A 88 947 823 HOH HOH . D 4 HOH A 89 948 824 HOH HOH . D 4 HOH A 90 949 825 HOH HOH . D 4 HOH A 91 950 826 HOH HOH . D 4 HOH A 92 951 827 HOH HOH . D 4 HOH A 93 952 828 HOH HOH . D 4 HOH A 94 953 829 HOH HOH . D 4 HOH A 95 954 830 HOH HOH . D 4 HOH A 96 955 831 HOH HOH . D 4 HOH A 97 956 832 HOH HOH . D 4 HOH A 98 957 833 HOH HOH . D 4 HOH A 99 958 834 HOH HOH . D 4 HOH A 100 959 835 HOH HOH . D 4 HOH A 101 960 836 HOH HOH . D 4 HOH A 102 961 837 HOH HOH . D 4 HOH A 103 962 838 HOH HOH . D 4 HOH A 104 963 839 HOH HOH . D 4 HOH A 105 964 840 HOH HOH . D 4 HOH A 106 965 841 HOH HOH . D 4 HOH A 107 966 842 HOH HOH . D 4 HOH A 108 967 843 HOH HOH . D 4 HOH A 109 968 844 HOH HOH . D 4 HOH A 110 969 845 HOH HOH . D 4 HOH A 111 970 846 HOH HOH . D 4 HOH A 112 971 847 HOH HOH . D 4 HOH A 113 972 848 HOH HOH . D 4 HOH A 114 973 849 HOH HOH . D 4 HOH A 115 974 850 HOH HOH . D 4 HOH A 116 975 851 HOH HOH . D 4 HOH A 117 976 852 HOH HOH . D 4 HOH A 118 977 853 HOH HOH . D 4 HOH A 119 978 854 HOH HOH . D 4 HOH A 120 979 855 HOH HOH . D 4 HOH A 121 980 856 HOH HOH . D 4 HOH A 122 981 857 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 12.644 27.65 11.568 1 26.47 ? PG ATP 858 A 1 HETATM 2 O O1G ATP . . . C 3 11.478 27.446 12.421 1 24.36 ? O1G ATP 858 A 1 HETATM 3 O O2G ATP . . . C 3 13.852 26.945 11.998 1 25.09 ? O2G ATP 858 A 1 HETATM 4 O O3G ATP . . . C 3 12.284 27.396 10.131 1 22.49 ? O3G ATP 858 A 1 HETATM 5 P PB ATP . . . C 3 12.235 30.569 11.605 1 23.23 ? PB ATP 858 A 1 HETATM 6 O O1B ATP . . . C 3 11.218 30.599 12.687 1 19.7 ? O1B ATP 858 A 1 HETATM 7 O O2B ATP . . . C 3 11.769 30.758 10.216 1 21.42 ? O2B ATP 858 A 1 HETATM 8 O O3B ATP . . . C 3 13.086 29.19 11.726 1 23.8 ? O3B ATP 858 A 1 HETATM 9 P PA ATP . . . C 3 13.706 32.238 13.46 1 28.52 ? PA ATP 858 A 1 HETATM 10 O O1A ATP . . . C 3 12.709 33.266 13.762 1 26.73 ? O1A ATP 858 A 1 HETATM 11 O O2A ATP . . . C 3 13.987 31.188 14.463 1 28.94 ? O2A ATP 858 A 1 HETATM 12 O O3A ATP . . . C 3 13.293 31.6 12.061 1 23.68 ? O3A ATP 858 A 1 HETATM 13 O O5' ATP . . . C 3 15.05 32.91 13.051 1 25.48 ? O5' ATP 858 A 1 HETATM 14 C C5' ATP . . . C 3 15.157 34.275 12.635 1 25.61 ? C5' ATP 858 A 1 HETATM 15 C C4' ATP . . . C 3 16.427 34.858 13.192 1 27.05 ? C4' ATP 858 A 1 HETATM 16 O O4' ATP . . . C 3 16.758 35.993 12.355 1 26.01 ? O4' ATP 858 A 1 HETATM 17 C C3' ATP . . . C 3 16.325 35.388 14.606 1 25.09 ? C3' ATP 858 A 1 HETATM 18 O O3' ATP . . . C 3 17.662 35.361 15.137 1 26.42 ? O3' ATP 858 A 1 HETATM 19 C C2' ATP . . . C 3 15.852 36.796 14.342 1 29.57 ? C2' ATP 858 A 1 HETATM 20 O O2' ATP . . . C 3 16.163 37.691 15.396 1 29.36 ? O2' ATP 858 A 1 HETATM 21 C C1' ATP . . . C 3 16.692 37.213 13.111 1 27.08 ? C1' ATP 858 A 1 HETATM 22 N N9 ATP . . . C 3 16.065 38.268 12.272 1 25.76 ? N9 ATP 858 A 1 HETATM 23 C C8 ATP . . . C 3 16.619 39.453 11.838 1 25.35 ? C8 ATP 858 A 1 HETATM 24 N N7 ATP . . . C 3 15.837 40.189 11.098 1 26.56 ? N7 ATP 858 A 1 HETATM 25 C C5 ATP . . . C 3 14.677 39.437 11.036 1 26.27 ? C5 ATP 858 A 1 HETATM 26 C C6 ATP . . . C 3 13.422 39.648 10.395 1 25.79 ? C6 ATP 858 A 1 HETATM 27 N N6 ATP . . . C 3 13.193 40.74 9.684 1 26.46 ? N6 ATP 858 A 1 HETATM 28 N N1 ATP . . . C 3 12.448 38.702 10.525 1 25.16 ? N1 ATP 858 A 1 HETATM 29 C C2 ATP . . . C 3 12.687 37.605 11.244 1 26.7 ? C2 ATP 858 A 1 HETATM 30 N N3 ATP . . . C 3 13.819 37.277 11.898 1 26.52 ? N3 ATP 858 A 1 HETATM 31 C C4 ATP . . . C 3 14.794 38.259 11.749 1 27.93 ? C4 ATP 858 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #