data_1NSY # _model_server_result.job_id BRszJJrBcEwL-uZBUuOOfg _model_server_result.datetime_utc '2024-10-18 23:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":6000}' # _entry.id 1NSY # _exptl.entry_id 1NSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.6 _cell.angle_gamma 90 _cell.entry_id 1NSY _cell.length_a 53.3 _cell.length_b 87.8 _cell.length_c 61.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 50 A ASP 50 1_555 C MG MG . A MG 6241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 A OE2 GLU 162 A GLU 162 1_555 C MG MG . A MG 6241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 E O1P AMP . A AMP 4000 1_555 C MG MG . A MG 6241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 F O1 POP . A POP 6000 1_555 C MG MG . A MG 6241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 F O5 POP . A POP 6000 1_555 C MG MG . A MG 6241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 K O HOH . A HOH 6080 1_555 C MG MG . A MG 6241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc7 B OD2 ASP 50 B ASP 50 1_555 G MG MG . B MG 6240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 B OE2 GLU 162 B GLU 162 1_555 G MG MG . B MG 6240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc9 I O1P AMP . B AMP 5000 1_555 G MG MG . B MG 6240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc10 L O HOH . B HOH 6216 1_555 G MG MG . B MG 6240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc11 G MG MG . B MG 6240 1_555 J O1 POP . B POP 7000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 G MG MG . B MG 6240 1_555 J O5 POP . B POP 7000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 335 n n P1 O2 POP sing 336 n n P1 O3 POP sing 337 n n P1 O POP sing 338 n n O2 HO2 POP sing 339 n n O P2 POP sing 340 n n P2 O4 POP doub 341 n n P2 O5 POP sing 342 n n P2 O6 POP sing 343 n n O5 HO5 POP sing 344 n n # _atom_sites.entry_id 1NSY _atom_sites.fract_transf_matrix[1][1] 0.018762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007052 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 6241 6241 MG MG . D 3 ATP A 1 3000 3000 ATP ATP . E 4 AMP A 1 4000 4000 AMP AMP . F 5 POP A 1 6000 6000 POP POP . G 2 MG B 1 6240 6240 MG MG . H 3 ATP B 1 2000 2000 ATP ATP . I 4 AMP B 1 5000 5000 AMP AMP . J 5 POP B 1 7000 7000 POP POP . K 6 HOH A 1 6003 6003 HOH HOH . K 6 HOH A 2 6004 6004 HOH HOH . K 6 HOH A 3 6006 6006 HOH HOH . K 6 HOH A 4 6007 6007 HOH HOH . K 6 HOH A 5 6008 6008 HOH HOH . K 6 HOH A 6 6009 6009 HOH HOH . K 6 HOH A 7 6010 6010 HOH HOH . K 6 HOH A 8 6011 6011 HOH HOH . K 6 HOH A 9 6012 6012 HOH HOH . K 6 HOH A 10 6014 6014 HOH HOH . K 6 HOH A 11 6015 6015 HOH HOH . K 6 HOH A 12 6016 6016 HOH HOH . K 6 HOH A 13 6017 6017 HOH HOH . K 6 HOH A 14 6018 6018 HOH HOH . K 6 HOH A 15 6019 6019 HOH HOH . K 6 HOH A 16 6020 6020 HOH HOH . K 6 HOH A 17 6022 6022 HOH HOH . K 6 HOH A 18 6023 6023 HOH HOH . K 6 HOH A 19 6024 6024 HOH HOH . K 6 HOH A 20 6028 6028 HOH HOH . K 6 HOH A 21 6029 6029 HOH HOH . K 6 HOH A 22 6031 6031 HOH HOH . K 6 HOH A 23 6032 6032 HOH HOH . K 6 HOH A 24 6039 6039 HOH HOH . K 6 HOH A 25 6041 6041 HOH HOH . K 6 HOH A 26 6047 6047 HOH HOH . K 6 HOH A 27 6050 6050 HOH HOH . K 6 HOH A 28 6052 6052 HOH HOH . K 6 HOH A 29 6054 6054 HOH HOH . K 6 HOH A 30 6055 6055 HOH HOH . K 6 HOH A 31 6058 6058 HOH HOH . K 6 HOH A 32 6060 6060 HOH HOH . K 6 HOH A 33 6061 6061 HOH HOH . K 6 HOH A 34 6062 6062 HOH HOH . K 6 HOH A 35 6067 6067 HOH HOH . K 6 HOH A 36 6068 6068 HOH HOH . K 6 HOH A 37 6070 6070 HOH HOH . K 6 HOH A 38 6072 6072 HOH HOH . K 6 HOH A 39 6075 6075 HOH HOH . K 6 HOH A 40 6080 6080 HOH HOH . K 6 HOH A 41 6081 6081 HOH HOH . K 6 HOH A 42 6084 6084 HOH HOH . K 6 HOH A 43 6085 6085 HOH HOH . K 6 HOH A 44 6087 6087 HOH HOH . K 6 HOH A 45 6089 6089 HOH HOH . K 6 HOH A 46 6090 6090 HOH HOH . K 6 HOH A 47 6094 6094 HOH HOH . K 6 HOH A 48 6097 6097 HOH HOH . K 6 HOH A 49 6100 6100 HOH HOH . K 6 HOH A 50 6101 6101 HOH HOH . K 6 HOH A 51 6104 6104 HOH HOH . K 6 HOH A 52 6105 6105 HOH HOH . K 6 HOH A 53 6107 6107 HOH HOH . K 6 HOH A 54 6109 6109 HOH HOH . K 6 HOH A 55 6114 6114 HOH HOH . K 6 HOH A 56 6116 6116 HOH HOH . K 6 HOH A 57 6117 6117 HOH HOH . K 6 HOH A 58 6118 6118 HOH HOH . K 6 HOH A 59 6119 6119 HOH HOH . K 6 HOH A 60 6132 6132 HOH HOH . K 6 HOH A 61 6133 6133 HOH HOH . K 6 HOH A 62 6135 6135 HOH HOH . K 6 HOH A 63 6138 6138 HOH HOH . K 6 HOH A 64 6139 6139 HOH HOH . K 6 HOH A 65 6144 6144 HOH HOH . K 6 HOH A 66 6145 6145 HOH HOH . K 6 HOH A 67 6152 6152 HOH HOH . K 6 HOH A 68 6156 6156 HOH HOH . K 6 HOH A 69 6157 6157 HOH HOH . K 6 HOH A 70 6158 6158 HOH HOH . K 6 HOH A 71 6159 6159 HOH HOH . K 6 HOH A 72 6161 6161 HOH HOH . K 6 HOH A 73 6162 6162 HOH HOH . K 6 HOH A 74 6163 6163 HOH HOH . K 6 HOH A 75 6164 6164 HOH HOH . K 6 HOH A 76 6166 6166 HOH HOH . K 6 HOH A 77 6167 6167 HOH HOH . K 6 HOH A 78 6170 6170 HOH HOH . K 6 HOH A 79 6171 6171 HOH HOH . K 6 HOH A 80 6173 6173 HOH HOH . K 6 HOH A 81 6175 6175 HOH HOH . K 6 HOH A 82 6178 6178 HOH HOH . K 6 HOH A 83 6181 6181 HOH HOH . K 6 HOH A 84 6182 6182 HOH HOH . K 6 HOH A 85 6186 6186 HOH HOH . K 6 HOH A 86 6187 6187 HOH HOH . K 6 HOH A 87 6188 6188 HOH HOH . K 6 HOH A 88 6189 6189 HOH HOH . K 6 HOH A 89 6192 6192 HOH HOH . K 6 HOH A 90 6195 6195 HOH HOH . K 6 HOH A 91 6197 6197 HOH HOH . K 6 HOH A 92 6198 6198 HOH HOH . K 6 HOH A 93 6202 6202 HOH HOH . K 6 HOH A 94 6204 6204 HOH HOH . K 6 HOH A 95 6205 6205 HOH HOH . K 6 HOH A 96 6206 6206 HOH HOH . K 6 HOH A 97 6207 6207 HOH HOH . K 6 HOH A 98 6208 6208 HOH HOH . K 6 HOH A 99 6210 6210 HOH HOH . K 6 HOH A 100 6213 6213 HOH HOH . K 6 HOH A 101 6219 6219 HOH HOH . K 6 HOH A 102 6222 6222 HOH HOH . K 6 HOH A 103 6223 6223 HOH HOH . K 6 HOH A 104 6225 6225 HOH HOH . K 6 HOH A 105 6226 6226 HOH HOH . K 6 HOH A 106 6230 6230 HOH HOH . K 6 HOH A 107 6231 6231 HOH HOH . K 6 HOH A 108 6235 6235 HOH HOH . K 6 HOH A 109 6238 6238 HOH HOH . L 6 HOH B 1 6001 6001 HOH HOH . L 6 HOH B 2 6002 6002 HOH HOH . L 6 HOH B 3 6005 6005 HOH HOH . L 6 HOH B 4 6013 6013 HOH HOH . L 6 HOH B 5 6021 6021 HOH HOH . L 6 HOH B 6 6025 6025 HOH HOH . L 6 HOH B 7 6026 6026 HOH HOH . L 6 HOH B 8 6027 6027 HOH HOH . L 6 HOH B 9 6030 6030 HOH HOH . L 6 HOH B 10 6033 6033 HOH HOH . L 6 HOH B 11 6035 6035 HOH HOH . L 6 HOH B 12 6036 6036 HOH HOH . L 6 HOH B 13 6037 6037 HOH HOH . L 6 HOH B 14 6038 6038 HOH HOH . L 6 HOH B 15 6040 6040 HOH HOH . L 6 HOH B 16 6042 6042 HOH HOH . L 6 HOH B 17 6043 6043 HOH HOH . L 6 HOH B 18 6044 6044 HOH HOH . L 6 HOH B 19 6045 6045 HOH HOH . L 6 HOH B 20 6048 6048 HOH HOH . L 6 HOH B 21 6049 6049 HOH HOH . L 6 HOH B 22 6051 6051 HOH HOH . L 6 HOH B 23 6053 6053 HOH HOH . L 6 HOH B 24 6056 6056 HOH HOH . L 6 HOH B 25 6057 6057 HOH HOH . L 6 HOH B 26 6059 6059 HOH HOH . L 6 HOH B 27 6063 6063 HOH HOH . L 6 HOH B 28 6064 6064 HOH HOH . L 6 HOH B 29 6065 6065 HOH HOH . L 6 HOH B 30 6066 6066 HOH HOH . L 6 HOH B 31 6069 6069 HOH HOH . L 6 HOH B 32 6071 6071 HOH HOH . L 6 HOH B 33 6073 6073 HOH HOH . L 6 HOH B 34 6076 6076 HOH HOH . L 6 HOH B 35 6077 6077 HOH HOH . L 6 HOH B 36 6078 6078 HOH HOH . L 6 HOH B 37 6079 6079 HOH HOH . L 6 HOH B 38 6082 6082 HOH HOH . L 6 HOH B 39 6083 6083 HOH HOH . L 6 HOH B 40 6086 6086 HOH HOH . L 6 HOH B 41 6088 6088 HOH HOH . L 6 HOH B 42 6091 6091 HOH HOH . L 6 HOH B 43 6092 6092 HOH HOH . L 6 HOH B 44 6093 6093 HOH HOH . L 6 HOH B 45 6095 6095 HOH HOH . L 6 HOH B 46 6096 6096 HOH HOH . L 6 HOH B 47 6098 6098 HOH HOH . L 6 HOH B 48 6102 6102 HOH HOH . L 6 HOH B 49 6103 6103 HOH HOH . L 6 HOH B 50 6106 6106 HOH HOH . L 6 HOH B 51 6108 6108 HOH HOH . L 6 HOH B 52 6110 6110 HOH HOH . L 6 HOH B 53 6111 6111 HOH HOH . L 6 HOH B 54 6112 6112 HOH HOH . L 6 HOH B 55 6113 6113 HOH HOH . L 6 HOH B 56 6115 6115 HOH HOH . L 6 HOH B 57 6120 6120 HOH HOH . L 6 HOH B 58 6121 6121 HOH HOH . L 6 HOH B 59 6122 6122 HOH HOH . L 6 HOH B 60 6123 6123 HOH HOH . L 6 HOH B 61 6124 6124 HOH HOH . L 6 HOH B 62 6125 6125 HOH HOH . L 6 HOH B 63 6126 6126 HOH HOH . L 6 HOH B 64 6127 6127 HOH HOH . L 6 HOH B 65 6128 6128 HOH HOH . L 6 HOH B 66 6129 6129 HOH HOH . L 6 HOH B 67 6130 6130 HOH HOH . L 6 HOH B 68 6131 6131 HOH HOH . L 6 HOH B 69 6134 6134 HOH HOH . L 6 HOH B 70 6136 6136 HOH HOH . L 6 HOH B 71 6137 6137 HOH HOH . L 6 HOH B 72 6140 6140 HOH HOH . L 6 HOH B 73 6141 6141 HOH HOH . L 6 HOH B 74 6142 6142 HOH HOH . L 6 HOH B 75 6146 6146 HOH HOH . L 6 HOH B 76 6147 6147 HOH HOH . L 6 HOH B 77 6148 6148 HOH HOH . L 6 HOH B 78 6149 6149 HOH HOH . L 6 HOH B 79 6150 6150 HOH HOH . L 6 HOH B 80 6151 6151 HOH HOH . L 6 HOH B 81 6153 6153 HOH HOH . L 6 HOH B 82 6154 6154 HOH HOH . L 6 HOH B 83 6155 6155 HOH HOH . L 6 HOH B 84 6160 6160 HOH HOH . L 6 HOH B 85 6165 6165 HOH HOH . L 6 HOH B 86 6168 6168 HOH HOH . L 6 HOH B 87 6169 6169 HOH HOH . L 6 HOH B 88 6172 6172 HOH HOH . L 6 HOH B 89 6174 6174 HOH HOH . L 6 HOH B 90 6177 6177 HOH HOH . L 6 HOH B 91 6179 6179 HOH HOH . L 6 HOH B 92 6180 6180 HOH HOH . L 6 HOH B 93 6183 6183 HOH HOH . L 6 HOH B 94 6185 6185 HOH HOH . L 6 HOH B 95 6190 6190 HOH HOH . L 6 HOH B 96 6193 6193 HOH HOH . L 6 HOH B 97 6196 6196 HOH HOH . L 6 HOH B 98 6199 6199 HOH HOH . L 6 HOH B 99 6201 6201 HOH HOH . L 6 HOH B 100 6203 6203 HOH HOH . L 6 HOH B 101 6212 6212 HOH HOH . L 6 HOH B 102 6214 6214 HOH HOH . L 6 HOH B 103 6215 6215 HOH HOH . L 6 HOH B 104 6216 6216 HOH HOH . L 6 HOH B 105 6217 6217 HOH HOH . L 6 HOH B 106 6218 6218 HOH HOH . L 6 HOH B 107 6221 6221 HOH HOH . L 6 HOH B 108 6224 6224 HOH HOH . L 6 HOH B 109 6227 6227 HOH HOH . L 6 HOH B 110 6228 6228 HOH HOH . L 6 HOH B 111 6229 6229 HOH HOH . L 6 HOH B 112 6232 6232 HOH HOH . L 6 HOH B 113 6233 6233 HOH HOH . L 6 HOH B 114 6234 6234 HOH HOH . L 6 HOH B 115 6236 6236 HOH HOH . L 6 HOH B 116 6239 6239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . F 5 17.462 62.339 50.86 1 23.02 ? P1 POP 6000 A 1 HETATM 2 O O1 POP . . . F 5 17.716 62.67 49.427 1 18.85 ? O1 POP 6000 A 1 HETATM 3 O O2 POP . . . F 5 18.463 63.019 51.736 1 22.13 ? O2 POP 6000 A 1 HETATM 4 O O3 POP . . . F 5 17.278 60.885 51.031 1 18.21 ? O3 POP 6000 A 1 HETATM 5 O O POP . . . F 5 16.041 63.019 51.314 1 16.57 ? O POP 6000 A 1 HETATM 6 P P2 POP . . . F 5 14.562 62.682 50.694 1 20.64 ? P2 POP 6000 A 1 HETATM 7 O O4 POP . . . F 5 13.528 63.321 51.539 1 18.74 ? O4 POP 6000 A 1 HETATM 8 O O5 POP . . . F 5 14.666 63.221 49.29 1 20.62 ? O5 POP 6000 A 1 HETATM 9 O O6 POP . . . F 5 14.397 61.047 50.734 1 21.7 ? O6 POP 6000 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 9 #