data_1NT0 # _model_server_result.job_id jKJxX3TkFw3ilXNh1outCQ _model_server_result.datetime_utc '2024-10-22 09:36:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1NT0 # _exptl.entry_id 1NT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.93 _cell.angle_gamma 90 _cell.entry_id 1NT0 _cell.length_a 70.411 _cell.length_b 103.901 _cell.length_c 70.484 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NT0 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 133 A CYS 133 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 148 A CYS 148 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 165 A CYS 165 1_555 A SG CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 222 A CYS 222 1_555 A SG CYS 240 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 B SG CYS 53 G CYS 53 1_555 B SG CYS 71 G CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 B SG CYS 123 G CYS 123 1_555 B SG CYS 137 G CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 B SG CYS 133 G CYS 133 1_555 B SG CYS 146 G CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf10 B SG CYS 148 G CYS 148 1_555 B SG CYS 161 G CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf11 B SG CYS 165 G CYS 165 1_555 B SG CYS 192 G CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 B SG CYS 222 G CYS 222 1_555 B SG CYS 240 G CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 84 A ASN 84 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A C HIS 138 A HIS 138 1_555 A N AHB 139 A AHB 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C AHB 139 A AHB 139 1_555 A N TYR 140 A TYR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B ND2 ASN 84 G ASN 84 1_555 F C1 NAG . G NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 B C HIS 138 G HIS 138 1_555 B N AHB 139 G AHB 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 B C AHB 139 G AHB 139 1_555 B N TYR 140 G TYR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OD1 ASP 119 A ASP 119 1_555 D CA CA . A CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc2 A OD2 ASP 119 A ASP 119 1_555 D CA CA . A CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc3 A O VAL 120 A VAL 120 1_555 D CA CA . A CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 A OD1 AHB 139 A AHB 139 1_555 D CA CA . A CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 A O TYR 140 A TYR 140 1_555 D CA CA . A CA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc6 D CA CA . A CA 3001 1_555 I O HOH . A HOH 8033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 B OD1 ASP 119 G ASP 119 1_555 G CA CA . G CA 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc8 B OD2 ASP 119 G ASP 119 1_555 G CA CA . G CA 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc9 B O VAL 120 G VAL 120 1_555 G CA CA . G CA 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 B OD1 AHB 139 G AHB 139 1_555 G CA CA . G CA 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 B O TYR 140 G TYR 140 1_555 G CA CA . G CA 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc12 G CA CA . G CA 4001 1_555 J O HOH . G HOH 9033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1NT0 _atom_sites.fract_transf_matrix[1][1] 0.014202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008177 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1001 1001 NAG NAG . D 3 CA A 1 3001 3001 CA CA . E 4 EDO A 1 5001 5001 EDO EDO . F 2 NAG G 1 2001 2001 NAG NAG . G 3 CA G 1 4001 4001 CA CA . H 4 EDO G 1 6001 6001 EDO EDO . I 5 HOH A 1 8001 8001 HOH HOH . I 5 HOH A 2 8002 8002 HOH HOH . I 5 HOH A 3 8003 8003 HOH HOH . I 5 HOH A 4 8004 8004 HOH HOH . I 5 HOH A 5 8005 8005 HOH HOH . I 5 HOH A 6 8007 8007 HOH HOH . I 5 HOH A 7 8009 8009 HOH HOH . I 5 HOH A 8 8010 8010 HOH HOH . I 5 HOH A 9 8012 8012 HOH HOH . I 5 HOH A 10 8013 8013 HOH HOH . I 5 HOH A 11 8014 8014 HOH HOH . I 5 HOH A 12 8015 8015 HOH HOH . I 5 HOH A 13 8016 8016 HOH HOH . I 5 HOH A 14 8018 8018 HOH HOH . I 5 HOH A 15 8019 8019 HOH HOH . I 5 HOH A 16 8020 8020 HOH HOH . I 5 HOH A 17 8021 8021 HOH HOH . I 5 HOH A 18 8022 8022 HOH HOH . I 5 HOH A 19 8023 8023 HOH HOH . I 5 HOH A 20 8024 8024 HOH HOH . I 5 HOH A 21 8026 8026 HOH HOH . I 5 HOH A 22 8027 8027 HOH HOH . I 5 HOH A 23 8028 8028 HOH HOH . I 5 HOH A 24 8029 8029 HOH HOH . I 5 HOH A 25 8030 8030 HOH HOH . I 5 HOH A 26 8031 8031 HOH HOH . I 5 HOH A 27 8032 8032 HOH HOH . I 5 HOH A 28 8033 8033 HOH HOH . I 5 HOH A 29 8034 8034 HOH HOH . I 5 HOH A 30 8035 8035 HOH HOH . I 5 HOH A 31 8036 8036 HOH HOH . I 5 HOH A 32 8037 8037 HOH HOH . I 5 HOH A 33 8038 8038 HOH HOH . I 5 HOH A 34 8040 8040 HOH HOH . I 5 HOH A 35 8042 8042 HOH HOH . I 5 HOH A 36 8043 8043 HOH HOH . I 5 HOH A 37 8044 8044 HOH HOH . I 5 HOH A 38 8045 8045 HOH HOH . I 5 HOH A 39 8046 8046 HOH HOH . I 5 HOH A 40 8047 8047 HOH HOH . I 5 HOH A 41 8048 8048 HOH HOH . I 5 HOH A 42 8049 8049 HOH HOH . I 5 HOH A 43 8050 8050 HOH HOH . I 5 HOH A 44 8051 8051 HOH HOH . I 5 HOH A 45 8052 8052 HOH HOH . I 5 HOH A 46 8053 8053 HOH HOH . I 5 HOH A 47 9006 9006 HOH HOH . I 5 HOH A 48 9008 9008 HOH HOH . I 5 HOH A 49 9011 9011 HOH HOH . I 5 HOH A 50 9015 9015 HOH HOH . I 5 HOH A 51 9017 9017 HOH HOH . I 5 HOH A 52 9025 9025 HOH HOH . I 5 HOH A 53 9039 9039 HOH HOH . I 5 HOH A 54 9041 9041 HOH HOH . J 5 HOH G 1 8006 8006 HOH HOH . J 5 HOH G 2 8008 8008 HOH HOH . J 5 HOH G 3 8011 8011 HOH HOH . J 5 HOH G 4 8017 8017 HOH HOH . J 5 HOH G 5 8025 8025 HOH HOH . J 5 HOH G 6 8039 8039 HOH HOH . J 5 HOH G 7 8041 8041 HOH HOH . J 5 HOH G 8 9001 9001 HOH HOH . J 5 HOH G 9 9002 9002 HOH HOH . J 5 HOH G 10 9003 9003 HOH HOH . J 5 HOH G 11 9004 9004 HOH HOH . J 5 HOH G 12 9005 9005 HOH HOH . J 5 HOH G 13 9007 9007 HOH HOH . J 5 HOH G 14 9009 9009 HOH HOH . J 5 HOH G 15 9010 9010 HOH HOH . J 5 HOH G 16 9012 9012 HOH HOH . J 5 HOH G 17 9013 9013 HOH HOH . J 5 HOH G 18 9014 9014 HOH HOH . J 5 HOH G 19 9016 9016 HOH HOH . J 5 HOH G 20 9018 9018 HOH HOH . J 5 HOH G 21 9019 9019 HOH HOH . J 5 HOH G 22 9020 9020 HOH HOH . J 5 HOH G 23 9021 9021 HOH HOH . J 5 HOH G 24 9022 9022 HOH HOH . J 5 HOH G 25 9023 9023 HOH HOH . J 5 HOH G 26 9024 9024 HOH HOH . J 5 HOH G 27 9026 9026 HOH HOH . J 5 HOH G 28 9027 9027 HOH HOH . J 5 HOH G 29 9028 9028 HOH HOH . J 5 HOH G 30 9029 9029 HOH HOH . J 5 HOH G 31 9030 9030 HOH HOH . J 5 HOH G 32 9031 9031 HOH HOH . J 5 HOH G 33 9032 9032 HOH HOH . J 5 HOH G 34 9033 9033 HOH HOH . J 5 HOH G 35 9034 9034 HOH HOH . J 5 HOH G 36 9035 9035 HOH HOH . J 5 HOH G 37 9036 9036 HOH HOH . J 5 HOH G 38 9037 9037 HOH HOH . J 5 HOH G 39 9038 9038 HOH HOH . J 5 HOH G 40 9040 9040 HOH HOH . J 5 HOH G 41 9042 9042 HOH HOH . J 5 HOH G 42 9043 9043 HOH HOH . J 5 HOH G 43 9044 9044 HOH HOH . J 5 HOH G 44 9045 9045 HOH HOH . J 5 HOH G 45 9046 9046 HOH HOH . J 5 HOH G 46 9047 9047 HOH HOH . J 5 HOH G 47 9048 9048 HOH HOH . J 5 HOH G 48 9049 9049 HOH HOH . J 5 HOH G 49 9050 9050 HOH HOH . J 5 HOH G 50 9051 9051 HOH HOH . J 5 HOH G 51 9052 9052 HOH HOH . J 5 HOH G 52 9053 9053 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 -17.524 48.31 14.952 1 68.16 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . C 2 -17.899 47.308 16.07 1 71.17 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . C 2 -19.347 46.783 15.913 1 72.54 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . C 2 -20.327 47.928 15.657 1 72.58 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . C 2 -19.828 48.746 14.467 1 71.86 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . C 2 -20.749 49.889 14.084 1 71.87 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . C 2 -16.157 45.949 17.054 1 73.37 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . C 2 -16.065 44.511 17.548 1 72.33 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . C 2 -16.972 46.189 16.029 1 72.3 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . C 2 -19.742 46.086 17.088 1 73.51 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . C 2 -21.622 47.406 15.391 1 73.19 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . C 2 -18.541 49.313 14.788 1 70.69 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . C 2 -20.644 50.19 12.698 1 71.26 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . C 2 -15.492 46.834 17.604 1 74.05 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #