data_1NT2 # _model_server_result.job_id zYGs1-TVmoOUE8HMLVCtxQ _model_server_result.datetime_utc '2024-10-11 15:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1NT2 # _exptl.entry_id 1NT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NT2 _cell.length_a 125.308 _cell.length_b 125.308 _cell.length_c 87.482 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 125.308 125.308 87.482 3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 125.308 125.308 0 4 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 87.482 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 262 n n N HN1 SAM sing 263 n n N HN2 SAM sing 264 n n CA C SAM sing 265 n n CA CB SAM sing 266 n n CA HA SAM sing 267 n n C O SAM doub 268 n n C OXT SAM sing 269 n n CB CG SAM sing 270 n n CB HB1 SAM sing 271 n n CB HB2 SAM sing 272 n n CG SD SAM sing 273 n n CG HG1 SAM sing 274 n n CG HG2 SAM sing 275 n n SD CE SAM sing 276 n n SD C5' SAM sing 277 n n CE HE1 SAM sing 278 n n CE HE2 SAM sing 279 n n CE HE3 SAM sing 280 n n C5' C4' SAM sing 281 n n C5' "H5'1" SAM sing 282 n n C5' "H5'2" SAM sing 283 n n C4' O4' SAM sing 284 n n C4' C3' SAM sing 285 n n C4' H4' SAM sing 286 n n O4' C1' SAM sing 287 n n C3' O3' SAM sing 288 n n C3' C2' SAM sing 289 n n C3' H3' SAM sing 290 n n O3' HO3' SAM sing 291 n n C2' O2' SAM sing 292 n n C2' C1' SAM sing 293 n n C2' H2' SAM sing 294 n n O2' HO2' SAM sing 295 n n C1' N9 SAM sing 296 n n C1' H1' SAM sing 297 n n N9 C8 SAM sing 298 n y N9 C4 SAM sing 299 n y C8 N7 SAM doub 300 n y C8 H8 SAM sing 301 n n N7 C5 SAM sing 302 n y C5 C6 SAM sing 303 n y C5 C4 SAM doub 304 n y C6 N6 SAM sing 305 n n C6 N1 SAM doub 306 n y N6 HN61 SAM sing 307 n n N6 HN62 SAM sing 308 n n N1 C2 SAM sing 309 n y C2 N3 SAM doub 310 n y C2 H2 SAM sing 311 n n N3 C4 SAM sing 312 n y # _atom_sites.entry_id 1NT2 _atom_sites.fract_transf_matrix[1][1] 0.00798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id SAM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id SAM _pdbx_nonpoly_scheme.auth_mon_id SAM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 33.343 32.304 33.477 1 61.26 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . C 3 34.762 32.091 33.859 1 61.99 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . C 3 34.914 30.819 34.683 1 61.24 ? C SAM 301 A 1 HETATM 4 O O SAM . . . C 3 33.905 30.161 34.921 1 61.62 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . C 3 36.1 30.53 35.067 1 60.41 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . C 3 35.29 33.333 34.632 1 63.32 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . C 3 35.975 34.284 33.658 1 64.21 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . C 3 36.751 35.849 34.262 1 63.28 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . C 3 35.441 36.96 34.801 1 62 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . C 3 37.43 36.638 32.859 1 55.31 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . C 3 38.55 35.906 32.156 1 50.31 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . C 3 38.926 36.727 31.048 1 49.76 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . C 3 39.828 35.758 32.982 1 47.76 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . C 3 39.947 34.324 33.178 1 45.34 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . C 3 40.982 36.224 32.106 1 46.86 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . C 3 42.183 35.483 32 1 42.85 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . C 3 40.286 36.55 30.77 1 47.47 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . C 3 40.771 37.757 30.124 1 45.26 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . C 3 40.731 39.055 30.563 1 43.57 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . C 3 41.244 39.91 29.73 1 43.36 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . C 3 41.655 39.129 28.662 1 42.37 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . C 3 42.285 39.44 27.42 1 40.94 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . C 3 42.607 40.701 27.075 1 38.52 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . C 3 42.578 38.413 26.54 1 41.76 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . C 3 42.246 37.14 26.9 1 42.58 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . C 3 41.645 36.734 28.044 1 43.18 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . C 3 41.374 37.791 28.892 1 43.68 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #