data_1NTD
#
_model_server_result.job_id            itq-dsbVoKkSaQJOLykDug 
_model_server_result.datetime_utc      '2024-11-16 15:38:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ntd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    1NTD 
#
_exptl.entry_id    1NTD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1NTD 
_cell.length_a            127.76 
_cell.length_b            127.76 
_cell.length_c            67.02 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NTD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 127.76 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 63.88 110.643406 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 98 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc2 A NE2 HIS 103 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc3 A NE2 HIS 138 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 A SG CYS 139 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc5 A ND1 HIS 148 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc6 A OE1 GLU 153 A GLU 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc7 A NE2 HIS 309 A HIS 306 3_665 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc8 C CU CU . A CU 502 1_555 D O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1NTD 
_atom_sites.fract_transf_matrix[1][1]    0.007827 
_atom_sites.fract_transf_matrix[1][2]    0.004519 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009038 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014921 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 501 501 CU CU . 
C 2 CU A 1 502 502 CU CU . 
D 3 HOH A 1 503 503 HOH MTO . 
D 3 HOH A 2 1014 1014 HOH HOH . 
D 3 HOH A 3 1017 1017 HOH HOH . 
D 3 HOH A 4 1018 1018 HOH HOH . 
D 3 HOH A 5 1021 1021 HOH HOH . 
D 3 HOH A 6 1024 1024 HOH HOH . 
D 3 HOH A 7 1025 1025 HOH HOH . 
D 3 HOH A 8 1027 1027 HOH HOH . 
D 3 HOH A 9 1029 1029 HOH HOH . 
D 3 HOH A 10 1030 1030 HOH HOH . 
D 3 HOH A 11 1042 1042 HOH HOH . 
D 3 HOH A 12 1047 1047 HOH HOH . 
D 3 HOH A 13 1058 1058 HOH HOH . 
D 3 HOH A 14 1060 1060 HOH HOH . 
D 3 HOH A 15 1067 1067 HOH HOH . 
D 3 HOH A 16 1072 1072 HOH HOH . 
D 3 HOH A 17 1074 1074 HOH HOH . 
D 3 HOH A 18 1077 1077 HOH HOH . 
D 3 HOH A 19 1079 1079 HOH HOH . 
D 3 HOH A 20 1084 1084 HOH HOH . 
D 3 HOH A 21 1092 1092 HOH HOH . 
D 3 HOH A 22 1098 1098 HOH HOH . 
D 3 HOH A 23 1102 1102 HOH HOH . 
D 3 HOH A 24 1103 1103 HOH HOH . 
D 3 HOH A 25 1105 1105 HOH HOH . 
D 3 HOH A 26 1106 1106 HOH HOH . 
D 3 HOH A 27 1113 1113 HOH HOH . 
D 3 HOH A 28 1123 1123 HOH HOH . 
D 3 HOH A 29 1127 1127 HOH HOH . 
D 3 HOH A 30 1128 1128 HOH HOH . 
D 3 HOH A 31 1133 1133 HOH HOH . 
D 3 HOH A 32 1139 1139 HOH HOH . 
D 3 HOH A 33 1140 1140 HOH HOH . 
D 3 HOH A 34 1147 1147 HOH HOH . 
D 3 HOH A 35 1148 1148 HOH HOH . 
D 3 HOH A 36 1151 1151 HOH HOH . 
D 3 HOH A 37 1163 1163 HOH HOH . 
D 3 HOH A 38 1165 1165 HOH HOH . 
D 3 HOH A 39 1173 1173 HOH HOH . 
D 3 HOH A 40 1179 1179 HOH HOH . 
D 3 HOH A 41 1182 1182 HOH HOH . 
D 3 HOH A 42 1184 1184 HOH HOH . 
D 3 HOH A 43 1193 1193 HOH HOH . 
D 3 HOH A 44 1196 1196 HOH HOH . 
D 3 HOH A 45 1203 1203 HOH HOH . 
D 3 HOH A 46 1205 1205 HOH HOH . 
D 3 HOH A 47 1208 1208 HOH HOH . 
D 3 HOH A 48 1211 1211 HOH HOH . 
D 3 HOH A 49 1212 1212 HOH HOH . 
D 3 HOH A 50 1221 1221 HOH HOH . 
D 3 HOH A 51 1223 1223 HOH HOH . 
D 3 HOH A 52 1227 1227 HOH HOH . 
D 3 HOH A 53 1231 1231 HOH HOH . 
D 3 HOH A 54 1240 1240 HOH HOH . 
D 3 HOH A 55 1251 1251 HOH HOH . 
D 3 HOH A 56 1255 1255 HOH HOH . 
D 3 HOH A 57 1259 1259 HOH HOH . 
D 3 HOH A 58 1262 1262 HOH HOH . 
D 3 HOH A 59 1266 1266 HOH HOH . 
D 3 HOH A 60 1271 1271 HOH HOH . 
D 3 HOH A 61 1275 1275 HOH HOH . 
D 3 HOH A 62 1277 1277 HOH HOH . 
D 3 HOH A 63 1279 1279 HOH HOH . 
D 3 HOH A 64 1282 1282 HOH HOH . 
D 3 HOH A 65 1293 1293 HOH HOH . 
D 3 HOH A 66 1296 1296 HOH HOH . 
D 3 HOH A 67 1300 1300 HOH HOH . 
D 3 HOH A 68 1301 1301 HOH HOH . 
D 3 HOH A 69 1303 1303 HOH HOH . 
D 3 HOH A 70 1310 1310 HOH HOH . 
D 3 HOH A 71 1311 1311 HOH HOH . 
D 3 HOH A 72 1317 1317 HOH HOH . 
D 3 HOH A 73 1324 1324 HOH HOH . 
D 3 HOH A 74 1325 1325 HOH HOH . 
D 3 HOH A 75 1326 1326 HOH HOH . 
D 3 HOH A 76 1329 1329 HOH HOH . 
D 3 HOH A 77 1333 1333 HOH HOH . 
D 3 HOH A 78 1334 1334 HOH HOH . 
D 3 HOH A 79 1336 1336 HOH HOH . 
D 3 HOH A 80 2025 2025 HOH HOH . 
D 3 HOH A 81 2058 2058 HOH HOH . 
D 3 HOH A 82 2060 2060 HOH HOH . 
D 3 HOH A 83 2077 2077 HOH HOH . 
D 3 HOH A 84 2151 2151 HOH HOH . 
D 3 HOH A 85 2184 2184 HOH HOH . 
D 3 HOH A 86 2211 2211 HOH HOH . 
D 3 HOH A 87 2251 2251 HOH HOH . 
D 3 HOH A 88 2262 2262 HOH HOH . 
D 3 HOH A 89 2279 2279 HOH HOH . 
D 3 HOH A 90 2296 2296 HOH HOH . 
D 3 HOH A 91 2329 2329 HOH HOH . 
D 3 HOH A 92 2333 2333 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               80.083 
_atom_site.Cartn_y               31.096 
_atom_site.Cartn_z               1.162 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        16.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           396 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#