data_1NU1 # _model_server_result.job_id AqhJig9oaSoc9QBNfxeIDQ _model_server_result.datetime_utc '2024-11-23 10:09:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":242}' # _entry.id 1NU1 # _exptl.entry_id 1NU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NU1 _cell.length_a 153.842 _cell.length_b 153.842 _cell.length_c 590.374 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.842 153.842 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 M N N ? 12 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 L FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 M FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 L FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 M FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 P FE1 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 P FE2 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 P FE1 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 133 n n CHA C4D HEM doub 134 n n CHA HHA HEM sing 135 n n CHB C4A HEM sing 136 n n CHB C1B HEM doub 137 n n CHB HHB HEM sing 138 n n CHC C4B HEM sing 139 n n CHC C1C HEM doub 140 n n CHC HHC HEM sing 141 n n CHD C4C HEM doub 142 n n CHD C1D HEM sing 143 n n CHD HHD HEM sing 144 n n C1A C2A HEM doub 145 n y C1A NA HEM sing 146 n y C2A C3A HEM sing 147 n y C2A CAA HEM sing 148 n n C3A C4A HEM doub 149 n y C3A CMA HEM sing 150 n n C4A NA HEM sing 151 n y CMA HMA HEM sing 152 n n CMA HMAA HEM sing 153 n n CMA HMAB HEM sing 154 n n CAA CBA HEM sing 155 n n CAA HAA HEM sing 156 n n CAA HAAA HEM sing 157 n n CBA CGA HEM sing 158 n n CBA HBA HEM sing 159 n n CBA HBAA HEM sing 160 n n CGA O1A HEM doub 161 n n CGA O2A HEM sing 162 n n C1B C2B HEM sing 163 n n C1B NB HEM sing 164 n n C2B C3B HEM doub 165 n n C2B CMB HEM sing 166 n n C3B C4B HEM sing 167 n n C3B CAB HEM sing 168 n n C4B NB HEM doub 169 n n CMB HMB HEM sing 170 n n CMB HMBA HEM sing 171 n n CMB HMBB HEM sing 172 n n CAB CBB HEM doub 173 n n CAB HAB HEM sing 174 n n CBB HBB HEM sing 175 n n CBB HBBA HEM sing 176 n n C1C C2C HEM sing 177 n y C1C NC HEM sing 178 n y C2C C3C HEM doub 179 n y C2C CMC HEM sing 180 n n C3C C4C HEM sing 181 n y C3C CAC HEM sing 182 n n C4C NC HEM sing 183 n y CMC HMC HEM sing 184 n n CMC HMCA HEM sing 185 n n CMC HMCB HEM sing 186 n n CAC CBC HEM doub 187 n n CAC HAC HEM sing 188 n n CBC HBC HEM sing 189 n n CBC HBCA HEM sing 190 n n C1D C2D HEM sing 191 n n C1D ND HEM doub 192 n n C2D C3D HEM doub 193 n n C2D CMD HEM sing 194 n n C3D C4D HEM sing 195 n n C3D CAD HEM sing 196 n n C4D ND HEM sing 197 n n CMD HMD HEM sing 198 n n CMD HMDA HEM sing 199 n n CMD HMDB HEM sing 200 n n CAD CBD HEM sing 201 n n CAD HAD HEM sing 202 n n CAD HADA HEM sing 203 n n CBD CGD HEM sing 204 n n CBD HBD HEM sing 205 n n CBD HBDA HEM sing 206 n n CGD O1D HEM doub 207 n n CGD O2D HEM sing 208 n n O2A H2A HEM sing 209 n n O2D H2D HEM sing 210 n n FE NA HEM sing 211 n n FE NB HEM sing 212 n n FE NC HEM sing 213 n n FE ND HEM sing 214 n n # _atom_sites.entry_id 1NU1 _atom_sites.fract_transf_matrix[1][1] 0.0065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 HEM C 1 381 381 HEM HEM . M 12 HEM C 1 382 382 HEM HEM . N 13 QNO C 1 383 102 QNO QNO . O 12 HEM D 1 242 242 HEM HEM . P 14 FES E 1 200 200 FES FES . Q 15 HOH C 1 1010 1010 HOH HOH . Q 15 HOH C 2 1029 1029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 12 58.129 58.995 192.669 1 37.13 ? CHA HEM 242 D 1 HETATM 2 C CHB HEM . . . O 12 53.728 61.56 192.122 1 34.36 ? CHB HEM 242 D 1 HETATM 3 C CHC HEM . . . O 12 54.106 63.206 196.922 1 38.97 ? CHC HEM 242 D 1 HETATM 4 C CHD HEM . . . O 12 58.279 60.297 197.565 1 30.25 ? CHD HEM 242 D 1 HETATM 5 C C1A HEM . . . O 12 56.882 59.616 192.162 1 34.87 ? C1A HEM 242 D 1 HETATM 6 C C2A HEM . . . O 12 56.465 59.399 190.749 1 35.07 ? C2A HEM 242 D 1 HETATM 7 C C3A HEM . . . O 12 55.211 60.153 190.599 1 32.49 ? C3A HEM 242 D 1 HETATM 8 C C4A HEM . . . O 12 54.96 60.752 191.928 1 34.97 ? C4A HEM 242 D 1 HETATM 9 C CMA HEM . . . O 12 54.336 60.31 189.388 1 29.28 ? CMA HEM 242 D 1 HETATM 10 C CAA HEM . . . O 12 57.217 58.602 189.702 1 36.4 ? CAA HEM 242 D 1 HETATM 11 C CBA HEM . . . O 12 56.402 57.429 189.168 1 33.62 ? CBA HEM 242 D 1 HETATM 12 C CGA HEM . . . O 12 57.291 56.651 188.23 1 35.92 ? CGA HEM 242 D 1 HETATM 13 O O1A HEM . . . O 12 58.473 56.5 188.499 1 36.69 ? O1A HEM 242 D 1 HETATM 14 O O2A HEM . . . O 12 56.842 56.173 187.2 1 35.33 ? O2A HEM 242 D 1 HETATM 15 C C1B HEM . . . O 12 53.655 62.227 193.437 1 30.54 ? C1B HEM 242 D 1 HETATM 16 C C2B HEM . . . O 12 52.752 63.16 193.614 1 29.41 ? C2B HEM 242 D 1 HETATM 17 C C3B HEM . . . O 12 52.829 63.592 194.847 1 29.7 ? C3B HEM 242 D 1 HETATM 18 C C4B HEM . . . O 12 53.785 62.93 195.488 1 32.95 ? C4B HEM 242 D 1 HETATM 19 C CMB HEM . . . O 12 51.84 63.659 192.522 1 24.87 ? CMB HEM 242 D 1 HETATM 20 C CAB HEM . . . O 12 51.964 64.659 195.45 1 25.07 ? CAB HEM 242 D 1 HETATM 21 C CBB HEM . . . O 12 50.469 64.357 195.342 1 24.5 ? CBB HEM 242 D 1 HETATM 22 C C1C HEM . . . O 12 55.259 62.376 197.408 1 37.03 ? C1C HEM 242 D 1 HETATM 23 C C2C HEM . . . O 12 55.506 62.256 198.71 1 35.77 ? C2C HEM 242 D 1 HETATM 24 C C3C HEM . . . O 12 56.568 61.49 198.886 1 36.73 ? C3C HEM 242 D 1 HETATM 25 C C4C HEM . . . O 12 57.038 61.115 197.692 1 32.32 ? C4C HEM 242 D 1 HETATM 26 C CMC HEM . . . O 12 54.677 62.871 199.809 1 29.24 ? CMC HEM 242 D 1 HETATM 27 C CAC HEM . . . O 12 57.128 61.075 200.242 1 38.09 ? CAC HEM 242 D 1 HETATM 28 C CBC HEM . . . O 12 56.669 59.658 200.62 1 27.89 ? CBC HEM 242 D 1 HETATM 29 C C1D HEM . . . O 12 58.417 59.676 196.218 1 29.79 ? C1D HEM 242 D 1 HETATM 30 C C2D HEM . . . O 12 59.288 58.698 196.002 1 30.05 ? C2D HEM 242 D 1 HETATM 31 C C3D HEM . . . O 12 59.235 58.336 194.75 1 30.58 ? C3D HEM 242 D 1 HETATM 32 C C4D HEM . . . O 12 58.342 59.106 194.128 1 30.18 ? C4D HEM 242 D 1 HETATM 33 C CMD HEM . . . O 12 60.16 58.03 197.036 1 29.81 ? CMD HEM 242 D 1 HETATM 34 C CAD HEM . . . O 12 60.116 57.244 194.153 1 32.12 ? CAD HEM 242 D 1 HETATM 35 C CBD HEM . . . O 12 59.426 55.932 193.77 1 34.08 ? CBD HEM 242 D 1 HETATM 36 C CGD HEM . . . O 12 60.488 54.956 193.298 1 38.03 ? CGD HEM 242 D 1 HETATM 37 O O1D HEM . . . O 12 60.745 53.966 193.966 1 43.4 ? O1D HEM 242 D 1 HETATM 38 O O2D HEM . . . O 12 61.111 55.152 192.263 1 37.6 ? O2D HEM 242 D 1 HETATM 39 N NA HEM . . . O 12 55.952 60.377 192.775 1 34.16 ? NA HEM 242 D 1 HETATM 40 N NB HEM . . . O 12 54.317 61.909 194.652 1 31.29 ? NB HEM 242 D 1 HETATM 41 N NC HEM . . . O 12 56.288 61.73 196.645 1 32.61 ? NC HEM 242 D 1 HETATM 42 N ND HEM . . . O 12 57.831 60.104 194.993 1 29.07 ? ND HEM 242 D 1 HETATM 43 FE FE HEM . . . O 12 56.078 60.995 194.815 1 28.52 ? FE HEM 242 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #