data_1NU1
#
_model_server_result.job_id            JlKURaMnwbprNUvpRB2VqQ 
_model_server_result.datetime_utc      '2024-11-21 14:07:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nu1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":382}' 
#
_entry.id    1NU1 
#
_exptl.entry_id    1NU1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NU1 
_cell.length_a            153.842 
_cell.length_b            153.842 
_cell.length_c            590.374 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NU1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.842 153.842 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 L N N 
? 12 M N N 
? 12 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 L FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 M FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 L FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 M FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 P FE1 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 P FE2 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 P FE1 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 133 n n 
CHA C4D HEM doub 134 n n 
CHA HHA HEM sing 135 n n 
CHB C4A HEM sing 136 n n 
CHB C1B HEM doub 137 n n 
CHB HHB HEM sing 138 n n 
CHC C4B HEM sing 139 n n 
CHC C1C HEM doub 140 n n 
CHC HHC HEM sing 141 n n 
CHD C4C HEM doub 142 n n 
CHD C1D HEM sing 143 n n 
CHD HHD HEM sing 144 n n 
C1A C2A HEM doub 145 n y 
C1A NA HEM sing 146 n y 
C2A C3A HEM sing 147 n y 
C2A CAA HEM sing 148 n n 
C3A C4A HEM doub 149 n y 
C3A CMA HEM sing 150 n n 
C4A NA HEM sing 151 n y 
CMA HMA HEM sing 152 n n 
CMA HMAA HEM sing 153 n n 
CMA HMAB HEM sing 154 n n 
CAA CBA HEM sing 155 n n 
CAA HAA HEM sing 156 n n 
CAA HAAA HEM sing 157 n n 
CBA CGA HEM sing 158 n n 
CBA HBA HEM sing 159 n n 
CBA HBAA HEM sing 160 n n 
CGA O1A HEM doub 161 n n 
CGA O2A HEM sing 162 n n 
C1B C2B HEM sing 163 n n 
C1B NB HEM sing 164 n n 
C2B C3B HEM doub 165 n n 
C2B CMB HEM sing 166 n n 
C3B C4B HEM sing 167 n n 
C3B CAB HEM sing 168 n n 
C4B NB HEM doub 169 n n 
CMB HMB HEM sing 170 n n 
CMB HMBA HEM sing 171 n n 
CMB HMBB HEM sing 172 n n 
CAB CBB HEM doub 173 n n 
CAB HAB HEM sing 174 n n 
CBB HBB HEM sing 175 n n 
CBB HBBA HEM sing 176 n n 
C1C C2C HEM sing 177 n y 
C1C NC HEM sing 178 n y 
C2C C3C HEM doub 179 n y 
C2C CMC HEM sing 180 n n 
C3C C4C HEM sing 181 n y 
C3C CAC HEM sing 182 n n 
C4C NC HEM sing 183 n y 
CMC HMC HEM sing 184 n n 
CMC HMCA HEM sing 185 n n 
CMC HMCB HEM sing 186 n n 
CAC CBC HEM doub 187 n n 
CAC HAC HEM sing 188 n n 
CBC HBC HEM sing 189 n n 
CBC HBCA HEM sing 190 n n 
C1D C2D HEM sing 191 n n 
C1D ND HEM doub 192 n n 
C2D C3D HEM doub 193 n n 
C2D CMD HEM sing 194 n n 
C3D C4D HEM sing 195 n n 
C3D CAD HEM sing 196 n n 
C4D ND HEM sing 197 n n 
CMD HMD HEM sing 198 n n 
CMD HMDA HEM sing 199 n n 
CMD HMDB HEM sing 200 n n 
CAD CBD HEM sing 201 n n 
CAD HAD HEM sing 202 n n 
CAD HADA HEM sing 203 n n 
CBD CGD HEM sing 204 n n 
CBD HBD HEM sing 205 n n 
CBD HBDA HEM sing 206 n n 
CGD O1D HEM doub 207 n n 
CGD O2D HEM sing 208 n n 
O2A H2A HEM sing 209 n n 
O2D H2D HEM sing 210 n n 
FE NA HEM sing 211 n n 
FE NB HEM sing 212 n n 
FE NC HEM sing 213 n n 
FE ND HEM sing 214 n n 
#
_atom_sites.entry_id                     1NU1 
_atom_sites.fract_transf_matrix[1][1]    0.0065 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0065 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001694 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 12 HEM C 1 381 381 HEM HEM . 
M 12 HEM C 1 382 382 HEM HEM . 
N 13 QNO C 1 383 102 QNO QNO . 
O 12 HEM D 1 242 242 HEM HEM . 
P 14 FES E 1 200 200 FES FES . 
Q 15 HOH C 1 1010 1010 HOH HOH . 
Q 15 HOH C 2 1029 1029 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . M 12 65.2 63.43 142.199 1 38.94 ? CHA HEM 382 C 1 
HETATM 2 C CHB HEM . . . M 12 66.165 66.779 145.945 1 23.49 ? CHB HEM 382 C 1 
HETATM 3 C CHC HEM . . . M 12 67.427 62.724 148.718 1 37.27 ? CHC HEM 382 C 1 
HETATM 4 C CHD HEM . . . M 12 68.533 60.319 144.386 1 42.58 ? CHD HEM 382 C 1 
HETATM 5 C C1A HEM . . . M 12 65.275 64.651 143.048 1 31.22 ? C1A HEM 382 C 1 
HETATM 6 C C2A HEM . . . M 12 64.654 65.927 142.629 1 28.74 ? C2A HEM 382 C 1 
HETATM 7 C C3A HEM . . . M 12 64.917 66.852 143.695 1 29.6 ? C3A HEM 382 C 1 
HETATM 8 C C4A HEM . . . M 12 65.679 66.096 144.708 1 30.39 ? C4A HEM 382 C 1 
HETATM 9 C CMA HEM . . . M 12 64.508 68.274 143.74 1 30.28 ? CMA HEM 382 C 1 
HETATM 10 C CAA HEM . . . M 12 63.906 66.256 141.374 1 42.5 ? CAA HEM 382 C 1 
HETATM 11 C CBA HEM . . . M 12 62.944 65.146 140.952 1 49.33 ? CBA HEM 382 C 1 
HETATM 12 C CGA HEM . . . M 12 61.86 65.204 141.967 1 45.96 ? CGA HEM 382 C 1 
HETATM 13 O O1A HEM . . . M 12 61.399 64.157 142.405 1 45.73 ? O1A HEM 382 C 1 
HETATM 14 O O2A HEM . . . M 12 61.495 66.32 142.342 1 39.06 ? O2A HEM 382 C 1 
HETATM 15 C C1B HEM . . . M 12 66.656 65.84 146.952 1 23.2 ? C1B HEM 382 C 1 
HETATM 16 C C2B HEM . . . M 12 66.968 66.259 148.151 1 26.67 ? C2B HEM 382 C 1 
HETATM 17 C C3B HEM . . . M 12 67.339 65.232 148.891 1 31.04 ? C3B HEM 382 C 1 
HETATM 18 C C4B HEM . . . M 12 67.217 64.109 148.163 1 35.72 ? C4B HEM 382 C 1 
HETATM 19 C CMB HEM . . . M 12 66.97 67.702 148.579 1 34.59 ? CMB HEM 382 C 1 
HETATM 20 C CAB HEM . . . M 12 67.725 65.325 150.357 1 26.27 ? CAB HEM 382 C 1 
HETATM 21 C CBB HEM . . . M 12 69.176 65.638 150.636 1 11.86 ? CBB HEM 382 C 1 
HETATM 22 C C1C HEM . . . M 12 67.75 61.722 147.658 1 31.78 ? C1C HEM 382 C 1 
HETATM 23 C C2C HEM . . . M 12 68.056 60.449 147.936 1 29.41 ? C2C HEM 382 C 1 
HETATM 24 C C3C HEM . . . M 12 68.351 59.83 146.788 1 29.2 ? C3C HEM 382 C 1 
HETATM 25 C C4C HEM . . . M 12 68.208 60.697 145.801 1 38.31 ? C4C HEM 382 C 1 
HETATM 26 C CMC HEM . . . M 12 68.046 59.89 149.347 1 21.45 ? CMC HEM 382 C 1 
HETATM 27 C CAC HEM . . . M 12 68.759 58.407 146.482 1 24.05 ? CAC HEM 382 C 1 
HETATM 28 C CBC HEM . . . M 12 69.279 57.656 147.691 1 43.62 ? CBC HEM 382 C 1 
HETATM 29 C C1D HEM . . . M 12 67.566 60.982 143.478 1 32.51 ? C1D HEM 382 C 1 
HETATM 30 C C2D HEM . . . M 12 67.263 60.519 142.278 1 35.28 ? C2D HEM 382 C 1 
HETATM 31 C C3D HEM . . . M 12 66.377 61.347 141.716 1 30.11 ? C3D HEM 382 C 1 
HETATM 32 C C4D HEM . . . M 12 66.134 62.341 142.54 1 33.89 ? C4D HEM 382 C 1 
HETATM 33 C CMD HEM . . . M 12 67.829 59.247 141.692 1 35.78 ? CMD HEM 382 C 1 
HETATM 34 C CAD HEM . . . M 12 65.761 61.249 140.35 1 18.74 ? CAD HEM 382 C 1 
HETATM 35 C CBD HEM . . . M 12 64.467 60.488 140.392 1 29.78 ? CBD HEM 382 C 1 
HETATM 36 C CGD HEM . . . M 12 63.558 61.033 139.334 1 37.42 ? CGD HEM 382 C 1 
HETATM 37 O O1D HEM . . . M 12 62.635 60.337 138.904 1 26.49 ? O1D HEM 382 C 1 
HETATM 38 O O2D HEM . . . M 12 63.753 62.18 138.936 1 40.06 ? O2D HEM 382 C 1 
HETATM 39 N NA HEM . . . M 12 65.823 64.846 144.239 1 24.08 ? NA HEM 382 C 1 
HETATM 40 N NB HEM . . . M 12 66.657 64.428 146.896 1 35.94 ? NB HEM 382 C 1 
HETATM 41 N NC HEM . . . M 12 67.919 62.006 146.281 1 33.94 ? NC HEM 382 C 1 
HETATM 42 N ND HEM . . . M 12 66.933 62.222 143.673 1 29.43 ? ND HEM 382 C 1 
HETATM 43 FE FE HEM . . . M 12 66.852 63.337 145.266 1 24.87 ? FE HEM 382 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#