data_1NUH # _model_server_result.job_id pMkN9EVxWDnRGnJ1df3HCQ _model_server_result.datetime_utc '2024-11-21 17:08:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nuh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":564}' # _entry.id 1NUH # _exptl.entry_id 1NUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.109 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-PHOSPHOARABINONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NUH _cell.length_a 94.4 _cell.length_b 94.4 _cell.length_c 137.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 241 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 240 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O1 _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 561 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.693 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H11 O9 P' _chem_comp.formula_weight 246.109 _chem_comp.id PA5 _chem_comp.mon_nstd_flag . _chem_comp.name '5-PHOSPHOARABINONIC ACID' _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1A C1 PA5 doub 237 n n C1 O1 PA5 sing 238 n n C1 C2 PA5 sing 239 n n O1 HO1 PA5 sing 240 n n C2 O2 PA5 sing 241 n n C2 C3 PA5 sing 242 n n C2 HC2 PA5 sing 243 n n O2 HO2 PA5 sing 244 n n C3 O3 PA5 sing 245 n n C3 C4 PA5 sing 246 n n C3 HC3 PA5 sing 247 n n O3 HO3 PA5 sing 248 n n C4 O4 PA5 sing 249 n n C4 C5 PA5 sing 250 n n C4 HC4 PA5 sing 251 n n O4 HO4 PA5 sing 252 n n C5 O5 PA5 sing 253 n n C5 H51 PA5 sing 254 n n C5 H52 PA5 sing 255 n n O5 P PA5 sing 256 n n P O1P PA5 doub 257 n n P O2P PA5 sing 258 n n P O3P PA5 sing 259 n n O2P HOP2 PA5 sing 260 n n O3P HOP3 PA5 sing 261 n n # _atom_sites.entry_id 1NUH _atom_sites.fract_transf_matrix[1][1] 0.010593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 558 201 SO4 SO4 . C 2 SO4 A 1 559 202 SO4 SO4 . D 2 SO4 A 1 560 203 SO4 SO4 . E 2 SO4 A 1 561 204 SO4 SO4 . F 2 SO4 A 1 562 205 SO4 SO4 . G 2 SO4 A 1 563 206 SO4 SO4 . H 3 PA5 A 1 564 301 PA5 PA5 . I 4 HOH A 1 565 1 HOH HOH . I 4 HOH A 2 566 2 HOH HOH . I 4 HOH A 3 567 3 HOH HOH . I 4 HOH A 4 568 4 HOH HOH . I 4 HOH A 5 569 5 HOH HOH . I 4 HOH A 6 570 6 HOH HOH . I 4 HOH A 7 571 7 HOH HOH . I 4 HOH A 8 572 8 HOH HOH . I 4 HOH A 9 573 9 HOH HOH . I 4 HOH A 10 574 10 HOH HOH . I 4 HOH A 11 575 11 HOH HOH . I 4 HOH A 12 576 12 HOH HOH . I 4 HOH A 13 577 13 HOH HOH . I 4 HOH A 14 578 14 HOH HOH . I 4 HOH A 15 579 15 HOH HOH . I 4 HOH A 16 580 16 HOH HOH . I 4 HOH A 17 581 17 HOH HOH . I 4 HOH A 18 582 18 HOH HOH . I 4 HOH A 19 583 19 HOH HOH . I 4 HOH A 20 584 20 HOH HOH . I 4 HOH A 21 585 21 HOH HOH . I 4 HOH A 22 586 22 HOH HOH . I 4 HOH A 23 587 23 HOH HOH . I 4 HOH A 24 588 24 HOH HOH . I 4 HOH A 25 589 25 HOH HOH . I 4 HOH A 26 590 26 HOH HOH . I 4 HOH A 27 591 27 HOH HOH . I 4 HOH A 28 592 28 HOH HOH . I 4 HOH A 29 593 29 HOH HOH . I 4 HOH A 30 594 30 HOH HOH . I 4 HOH A 31 595 31 HOH HOH . I 4 HOH A 32 596 32 HOH HOH . I 4 HOH A 33 597 33 HOH HOH . I 4 HOH A 34 598 34 HOH HOH . I 4 HOH A 35 599 35 HOH HOH . I 4 HOH A 36 600 36 HOH HOH . I 4 HOH A 37 601 37 HOH HOH . I 4 HOH A 38 602 38 HOH HOH . I 4 HOH A 39 603 39 HOH HOH . I 4 HOH A 40 604 40 HOH HOH . I 4 HOH A 41 605 41 HOH HOH . I 4 HOH A 42 606 42 HOH HOH . I 4 HOH A 43 607 43 HOH HOH . I 4 HOH A 44 608 44 HOH HOH . I 4 HOH A 45 609 45 HOH HOH . I 4 HOH A 46 610 46 HOH HOH . I 4 HOH A 47 611 47 HOH HOH . I 4 HOH A 48 612 48 HOH HOH . I 4 HOH A 49 613 49 HOH HOH . I 4 HOH A 50 614 50 HOH HOH . I 4 HOH A 51 615 51 HOH HOH . I 4 HOH A 52 616 52 HOH HOH . I 4 HOH A 53 617 53 HOH HOH . I 4 HOH A 54 618 54 HOH HOH . I 4 HOH A 55 619 55 HOH HOH . I 4 HOH A 56 620 56 HOH HOH . I 4 HOH A 57 621 57 HOH HOH . I 4 HOH A 58 622 58 HOH HOH . I 4 HOH A 59 623 59 HOH HOH . I 4 HOH A 60 624 60 HOH HOH . I 4 HOH A 61 625 61 HOH HOH . I 4 HOH A 62 626 62 HOH HOH . I 4 HOH A 63 627 63 HOH HOH . I 4 HOH A 64 628 64 HOH HOH . I 4 HOH A 65 629 65 HOH HOH . I 4 HOH A 66 630 66 HOH HOH . I 4 HOH A 67 631 67 HOH HOH . I 4 HOH A 68 632 68 HOH HOH . I 4 HOH A 69 633 69 HOH HOH . I 4 HOH A 70 634 70 HOH HOH . I 4 HOH A 71 635 71 HOH HOH . I 4 HOH A 72 636 72 HOH HOH . I 4 HOH A 73 637 73 HOH HOH . I 4 HOH A 74 638 74 HOH HOH . I 4 HOH A 75 639 75 HOH HOH . I 4 HOH A 76 640 76 HOH HOH . I 4 HOH A 77 641 77 HOH HOH . I 4 HOH A 78 642 78 HOH HOH . I 4 HOH A 79 643 79 HOH HOH . I 4 HOH A 80 644 80 HOH HOH . I 4 HOH A 81 645 81 HOH HOH . I 4 HOH A 82 646 82 HOH HOH . I 4 HOH A 83 647 83 HOH HOH . I 4 HOH A 84 648 84 HOH HOH . I 4 HOH A 85 649 85 HOH HOH . I 4 HOH A 86 650 86 HOH HOH . I 4 HOH A 87 651 87 HOH HOH . I 4 HOH A 88 652 88 HOH HOH . I 4 HOH A 89 653 89 HOH HOH . I 4 HOH A 90 654 90 HOH HOH . I 4 HOH A 91 655 91 HOH HOH . I 4 HOH A 92 656 92 HOH HOH . I 4 HOH A 93 657 93 HOH HOH . I 4 HOH A 94 658 94 HOH HOH . I 4 HOH A 95 659 95 HOH HOH . I 4 HOH A 96 660 96 HOH HOH . I 4 HOH A 97 661 97 HOH HOH . I 4 HOH A 98 662 98 HOH HOH . I 4 HOH A 99 663 99 HOH HOH . I 4 HOH A 100 664 100 HOH HOH . I 4 HOH A 101 665 101 HOH HOH . I 4 HOH A 102 666 102 HOH HOH . I 4 HOH A 103 667 103 HOH HOH . I 4 HOH A 104 668 104 HOH HOH . I 4 HOH A 105 669 105 HOH HOH . I 4 HOH A 106 670 106 HOH HOH . I 4 HOH A 107 671 107 HOH HOH . I 4 HOH A 108 672 108 HOH HOH . I 4 HOH A 109 673 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1A PA5 . . . H 3 63.63 45.016 11.678 1 26.76 ? O1A PA5 564 A 1 HETATM 2 C C1 PA5 . . . H 3 63.492 44.886 12.888 1 27.96 ? C1 PA5 564 A 1 HETATM 3 O O1 PA5 . . . H 3 64.431 44.561 13.618 1 28 ? O1 PA5 564 A 1 HETATM 4 C C2 PA5 . . . H 3 62.133 45.069 13.472 1 29.03 ? C2 PA5 564 A 1 HETATM 5 O O2 PA5 . . . H 3 61.195 45.367 12.435 1 31.58 ? O2 PA5 564 A 1 HETATM 6 C C3 PA5 . . . H 3 61.747 43.727 14.049 1 27.82 ? C3 PA5 564 A 1 HETATM 7 O O3 PA5 . . . H 3 61.735 42.793 12.969 1 28.06 ? O3 PA5 564 A 1 HETATM 8 C C4 PA5 . . . H 3 60.358 43.809 14.621 1 27.09 ? C4 PA5 564 A 1 HETATM 9 O O4 PA5 . . . H 3 60.345 44.637 15.773 1 30.62 ? O4 PA5 564 A 1 HETATM 10 C C5 PA5 . . . H 3 59.901 42.412 14.986 1 27.28 ? C5 PA5 564 A 1 HETATM 11 O O5 PA5 . . . H 3 60.649 41.982 16.111 1 22.86 ? O5 PA5 564 A 1 HETATM 12 P P PA5 . . . H 3 60.56 40.45 16.534 1 21.87 ? P PA5 564 A 1 HETATM 13 O O1P PA5 . . . H 3 59.214 40.387 17.187 1 23.95 ? O1P PA5 564 A 1 HETATM 14 O O2P PA5 . . . H 3 60.629 39.645 15.268 1 21.93 ? O2P PA5 564 A 1 HETATM 15 O O3P PA5 . . . H 3 61.724 40.22 17.476 1 22.56 ? O3P PA5 564 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #