data_1NV8
#
_model_server_result.job_id            8z38zzgGascQ8xiluZ00-Q 
_model_server_result.datetime_utc      '2024-12-02 01:32:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    1NV8 
#
_exptl.entry_id    1NV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.171 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N5-METHYLGLUTAMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.22 
_cell.angle_gamma         90 
_cell.entry_id            1NV8 
_cell.length_a            141.489 
_cell.length_b            59.062 
_cell.length_c            85.605 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            CE 
_struct_conn.ptnr1_label_comp_id            SAM 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SAM 
_struct_conn.ptnr1_auth_seq_id              300 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            CE 
_struct_conn.ptnr2_label_comp_id            MEQ 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MEQ 
_struct_conn.ptnr2_auth_seq_id              400 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.856 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H12 N2 O3' 
_chem_comp.formula_weight    160.171 
_chem_comp.id                MEQ 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              N5-METHYLGLUTAMINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA MEQ sing 218 n n 
N H MEQ sing 219 n n 
N H2 MEQ sing 220 n n 
CA CB MEQ sing 221 n n 
CA C MEQ sing 222 n n 
CA HA MEQ sing 223 n n 
CB CG MEQ sing 224 n n 
CB HB2 MEQ sing 225 n n 
CB HB3 MEQ sing 226 n n 
CG CD MEQ sing 227 n n 
CG HG2 MEQ sing 228 n n 
CG HG3 MEQ sing 229 n n 
CD OE1 MEQ doub 230 n n 
CD NE2 MEQ sing 231 n n 
NE2 CE MEQ sing 232 n n 
NE2 HE21 MEQ sing 233 n n 
CE HE1 MEQ sing 234 n n 
CE HE2 MEQ sing 235 n n 
CE HE3 MEQ sing 236 n n 
C O MEQ doub 237 n n 
C OXT MEQ sing 238 n n 
OXT HXT MEQ sing 239 n n 
#
_atom_sites.entry_id                     1NV8 
_atom_sites.fract_transf_matrix[1][1]    0.007068 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002464 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 300 300 SAM SAM . 
D 3 MEQ A 1 400 500 MEQ MEQ . 
E 2 SAM B 1 301 300 SAM SAM . 
F 3 MEQ B 1 401 400 MEQ MEQ . 
G 4 HOH A 1 401 6 HOH HOH . 
G 4 HOH A 2 402 8 HOH HOH . 
G 4 HOH A 3 403 9 HOH HOH . 
G 4 HOH A 4 404 10 HOH HOH . 
G 4 HOH A 5 405 11 HOH HOH . 
G 4 HOH A 6 406 13 HOH HOH . 
G 4 HOH A 7 407 14 HOH HOH . 
G 4 HOH A 8 408 15 HOH HOH . 
G 4 HOH A 9 409 16 HOH HOH . 
G 4 HOH A 10 410 19 HOH HOH . 
G 4 HOH A 11 411 23 HOH HOH . 
G 4 HOH A 12 412 24 HOH HOH . 
G 4 HOH A 13 413 25 HOH HOH . 
G 4 HOH A 14 414 27 HOH HOH . 
G 4 HOH A 15 415 28 HOH HOH . 
G 4 HOH A 16 416 29 HOH HOH . 
G 4 HOH A 17 417 32 HOH HOH . 
G 4 HOH A 18 418 34 HOH HOH . 
G 4 HOH A 19 419 37 HOH HOH . 
G 4 HOH A 20 420 41 HOH HOH . 
G 4 HOH A 21 421 42 HOH HOH . 
G 4 HOH A 22 422 44 HOH HOH . 
G 4 HOH A 23 423 45 HOH HOH . 
G 4 HOH A 24 424 46 HOH HOH . 
G 4 HOH A 25 425 47 HOH HOH . 
G 4 HOH A 26 426 48 HOH HOH . 
G 4 HOH A 27 427 58 HOH HOH . 
G 4 HOH A 28 428 61 HOH HOH . 
G 4 HOH A 29 429 63 HOH HOH . 
G 4 HOH A 30 430 65 HOH HOH . 
G 4 HOH A 31 431 66 HOH HOH . 
G 4 HOH A 32 432 67 HOH HOH . 
G 4 HOH A 33 433 68 HOH HOH . 
G 4 HOH A 34 434 69 HOH HOH . 
G 4 HOH A 35 435 71 HOH HOH . 
G 4 HOH A 36 436 72 HOH HOH . 
G 4 HOH A 37 437 75 HOH HOH . 
G 4 HOH A 38 438 76 HOH HOH . 
G 4 HOH A 39 439 77 HOH HOH . 
G 4 HOH A 40 440 81 HOH HOH . 
G 4 HOH A 41 441 83 HOH HOH . 
G 4 HOH A 42 442 87 HOH HOH . 
G 4 HOH A 43 443 88 HOH HOH . 
G 4 HOH A 44 444 92 HOH HOH . 
G 4 HOH A 45 445 95 HOH HOH . 
G 4 HOH A 46 446 97 HOH HOH . 
G 4 HOH A 47 447 100 HOH HOH . 
G 4 HOH A 48 448 102 HOH HOH . 
G 4 HOH A 49 449 103 HOH HOH . 
G 4 HOH A 50 450 105 HOH HOH . 
G 4 HOH A 51 451 110 HOH HOH . 
G 4 HOH A 52 452 113 HOH HOH . 
G 4 HOH A 53 453 116 HOH HOH . 
G 4 HOH A 54 454 117 HOH HOH . 
G 4 HOH A 55 455 118 HOH HOH . 
G 4 HOH A 56 456 119 HOH HOH . 
G 4 HOH A 57 457 120 HOH HOH . 
G 4 HOH A 58 458 121 HOH HOH . 
G 4 HOH A 59 459 122 HOH HOH . 
G 4 HOH A 60 460 123 HOH HOH . 
G 4 HOH A 61 461 124 HOH HOH . 
G 4 HOH A 62 462 125 HOH HOH . 
G 4 HOH A 63 463 126 HOH HOH . 
G 4 HOH A 64 464 127 HOH HOH . 
G 4 HOH A 65 465 128 HOH HOH . 
G 4 HOH A 66 466 129 HOH HOH . 
G 4 HOH A 67 467 130 HOH HOH . 
G 4 HOH A 68 468 132 HOH HOH . 
G 4 HOH A 69 469 133 HOH HOH . 
G 4 HOH A 70 470 134 HOH HOH . 
G 4 HOH A 71 471 135 HOH HOH . 
G 4 HOH A 72 472 136 HOH HOH . 
G 4 HOH A 73 473 138 HOH HOH . 
G 4 HOH A 74 474 140 HOH HOH . 
G 4 HOH A 75 475 141 HOH HOH . 
G 4 HOH A 76 476 142 HOH HOH . 
G 4 HOH A 77 477 143 HOH HOH . 
G 4 HOH A 78 478 144 HOH HOH . 
G 4 HOH A 79 479 145 HOH HOH . 
G 4 HOH A 80 480 161 HOH HOH . 
G 4 HOH A 81 481 163 HOH HOH . 
G 4 HOH A 82 482 164 HOH HOH . 
G 4 HOH A 83 483 165 HOH HOH . 
G 4 HOH A 84 484 166 HOH HOH . 
G 4 HOH A 85 485 167 HOH HOH . 
G 4 HOH A 86 486 168 HOH HOH . 
G 4 HOH A 87 487 169 HOH HOH . 
G 4 HOH A 88 488 170 HOH HOH . 
G 4 HOH A 89 489 171 HOH HOH . 
G 4 HOH A 90 490 172 HOH HOH . 
G 4 HOH A 91 491 173 HOH HOH . 
G 4 HOH A 92 492 174 HOH HOH . 
G 4 HOH A 93 493 185 HOH HOH . 
G 4 HOH A 94 494 186 HOH HOH . 
G 4 HOH A 95 495 187 HOH HOH . 
G 4 HOH A 96 496 188 HOH HOH . 
G 4 HOH A 97 497 189 HOH HOH . 
G 4 HOH A 98 498 200 HOH HOH . 
G 4 HOH A 99 499 201 HOH HOH . 
G 4 HOH A 100 500 202 HOH HOH . 
G 4 HOH A 101 501 203 HOH HOH . 
G 4 HOH A 102 502 204 HOH HOH . 
G 4 HOH A 103 503 205 HOH HOH . 
G 4 HOH A 104 504 206 HOH HOH . 
G 4 HOH A 105 505 207 HOH HOH . 
G 4 HOH A 106 506 208 HOH HOH . 
G 4 HOH A 107 507 210 HOH HOH . 
G 4 HOH A 108 508 211 HOH HOH . 
G 4 HOH A 109 509 212 HOH HOH . 
G 4 HOH A 110 510 213 HOH HOH . 
G 4 HOH A 111 511 215 HOH HOH . 
G 4 HOH A 112 512 216 HOH HOH . 
G 4 HOH A 113 513 217 HOH HOH . 
G 4 HOH A 114 514 218 HOH HOH . 
G 4 HOH A 115 515 219 HOH HOH . 
G 4 HOH A 116 516 220 HOH HOH . 
G 4 HOH A 117 517 221 HOH HOH . 
G 4 HOH A 118 518 222 HOH HOH . 
G 4 HOH A 119 519 223 HOH HOH . 
G 4 HOH A 120 520 224 HOH HOH . 
G 4 HOH A 121 521 225 HOH HOH . 
G 4 HOH A 122 522 226 HOH HOH . 
G 4 HOH A 123 523 227 HOH HOH . 
G 4 HOH A 124 524 228 HOH HOH . 
G 4 HOH A 125 525 229 HOH HOH . 
G 4 HOH A 126 526 247 HOH HOH . 
G 4 HOH A 127 527 248 HOH HOH . 
G 4 HOH A 128 528 249 HOH HOH . 
G 4 HOH A 129 529 252 HOH HOH . 
G 4 HOH A 130 530 253 HOH HOH . 
G 4 HOH A 131 531 257 HOH HOH . 
G 4 HOH A 132 532 258 HOH HOH . 
G 4 HOH A 133 533 259 HOH HOH . 
G 4 HOH A 134 534 265 HOH HOH . 
G 4 HOH A 135 535 270 HOH HOH . 
G 4 HOH A 136 536 271 HOH HOH . 
G 4 HOH A 137 537 272 HOH HOH . 
H 4 HOH B 1 402 1 HOH HOH . 
H 4 HOH B 2 403 2 HOH HOH . 
H 4 HOH B 3 404 3 HOH HOH . 
H 4 HOH B 4 405 4 HOH HOH . 
H 4 HOH B 5 406 5 HOH HOH . 
H 4 HOH B 6 407 7 HOH HOH . 
H 4 HOH B 7 408 12 HOH HOH . 
H 4 HOH B 8 409 17 HOH HOH . 
H 4 HOH B 9 410 18 HOH HOH . 
H 4 HOH B 10 411 20 HOH HOH . 
H 4 HOH B 11 412 21 HOH HOH . 
H 4 HOH B 12 413 22 HOH HOH . 
H 4 HOH B 13 414 26 HOH HOH . 
H 4 HOH B 14 415 30 HOH HOH . 
H 4 HOH B 15 416 31 HOH HOH . 
H 4 HOH B 16 417 33 HOH HOH . 
H 4 HOH B 17 418 35 HOH HOH . 
H 4 HOH B 18 419 36 HOH HOH . 
H 4 HOH B 19 420 38 HOH HOH . 
H 4 HOH B 20 421 39 HOH HOH . 
H 4 HOH B 21 422 40 HOH HOH . 
H 4 HOH B 22 423 43 HOH HOH . 
H 4 HOH B 23 424 50 HOH HOH . 
H 4 HOH B 24 425 51 HOH HOH . 
H 4 HOH B 25 426 52 HOH HOH . 
H 4 HOH B 26 427 53 HOH HOH . 
H 4 HOH B 27 428 56 HOH HOH . 
H 4 HOH B 28 429 57 HOH HOH . 
H 4 HOH B 29 430 59 HOH HOH . 
H 4 HOH B 30 431 60 HOH HOH . 
H 4 HOH B 31 432 62 HOH HOH . 
H 4 HOH B 32 433 70 HOH HOH . 
H 4 HOH B 33 434 74 HOH HOH . 
H 4 HOH B 34 435 79 HOH HOH . 
H 4 HOH B 35 436 82 HOH HOH . 
H 4 HOH B 36 437 84 HOH HOH . 
H 4 HOH B 37 438 85 HOH HOH . 
H 4 HOH B 38 439 89 HOH HOH . 
H 4 HOH B 39 440 90 HOH HOH . 
H 4 HOH B 40 441 93 HOH HOH . 
H 4 HOH B 41 442 94 HOH HOH . 
H 4 HOH B 42 443 98 HOH HOH . 
H 4 HOH B 43 444 99 HOH HOH . 
H 4 HOH B 44 445 101 HOH HOH . 
H 4 HOH B 45 446 108 HOH HOH . 
H 4 HOH B 46 447 112 HOH HOH . 
H 4 HOH B 47 448 147 HOH HOH . 
H 4 HOH B 48 449 148 HOH HOH . 
H 4 HOH B 49 450 150 HOH HOH . 
H 4 HOH B 50 451 151 HOH HOH . 
H 4 HOH B 51 452 152 HOH HOH . 
H 4 HOH B 52 453 153 HOH HOH . 
H 4 HOH B 53 454 154 HOH HOH . 
H 4 HOH B 54 455 156 HOH HOH . 
H 4 HOH B 55 456 157 HOH HOH . 
H 4 HOH B 56 457 158 HOH HOH . 
H 4 HOH B 57 458 159 HOH HOH . 
H 4 HOH B 58 459 160 HOH HOH . 
H 4 HOH B 59 460 176 HOH HOH . 
H 4 HOH B 60 461 177 HOH HOH . 
H 4 HOH B 61 462 178 HOH HOH . 
H 4 HOH B 62 463 180 HOH HOH . 
H 4 HOH B 63 464 181 HOH HOH . 
H 4 HOH B 64 465 182 HOH HOH . 
H 4 HOH B 65 466 183 HOH HOH . 
H 4 HOH B 66 467 184 HOH HOH . 
H 4 HOH B 67 468 191 HOH HOH . 
H 4 HOH B 68 469 192 HOH HOH . 
H 4 HOH B 69 470 193 HOH HOH . 
H 4 HOH B 70 471 230 HOH HOH . 
H 4 HOH B 71 472 231 HOH HOH . 
H 4 HOH B 72 473 234 HOH HOH . 
H 4 HOH B 73 474 235 HOH HOH . 
H 4 HOH B 74 475 236 HOH HOH . 
H 4 HOH B 75 476 237 HOH HOH . 
H 4 HOH B 76 477 238 HOH HOH . 
H 4 HOH B 77 478 239 HOH HOH . 
H 4 HOH B 78 479 240 HOH HOH . 
H 4 HOH B 79 480 241 HOH HOH . 
H 4 HOH B 80 481 243 HOH HOH . 
H 4 HOH B 81 482 244 HOH HOH . 
H 4 HOH B 82 483 246 HOH HOH . 
H 4 HOH B 83 484 250 HOH HOH . 
H 4 HOH B 84 485 255 HOH HOH . 
H 4 HOH B 85 486 256 HOH HOH . 
H 4 HOH B 86 487 262 HOH HOH . 
H 4 HOH B 87 488 263 HOH HOH . 
H 4 HOH B 88 489 264 HOH HOH . 
H 4 HOH B 89 490 267 HOH HOH . 
H 4 HOH B 90 491 268 HOH HOH . 
H 4 HOH B 91 492 269 HOH HOH . 
H 4 HOH B 92 493 273 HOH HOH . 
H 4 HOH B 93 494 274 HOH HOH . 
H 4 HOH B 94 495 275 HOH HOH . 
H 4 HOH B 95 496 276 HOH HOH . 
H 4 HOH B 96 497 277 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N MEQ . . . F 3 -1.323 10.684 -31.763 0 67.34 ? N MEQ 401 B 1 
HETATM 2 C CA MEQ . . . F 3 -0.753 10.696 -33.108 0 67.11 ? CA MEQ 401 B 1 
HETATM 3 C CB MEQ . . . F 3 -1.002 11.993 -33.872 0 66.42 ? CB MEQ 401 B 1 
HETATM 4 C CG MEQ . . . F 3 -1.169 12.573 -33.779 0 57.99 ? CG MEQ 401 B 1 
HETATM 5 C CD MEQ . . . F 3 -1.932 14.041 -33.166 1 57.44 ? CD MEQ 401 B 1 
HETATM 6 O OE1 MEQ . . . F 3 -1.259 15.031 -32.82 1 44.43 ? OE1 MEQ 401 B 1 
HETATM 7 N NE2 MEQ . . . F 3 -3.343 14.066 -33.239 1 52.24 ? NE2 MEQ 401 B 1 
HETATM 8 C CE MEQ . . . F 3 -3.612 14.819 -34.434 1 49.88 ? CE MEQ 401 B 1 
HETATM 9 C C MEQ . . . F 3 0.767 10.541 -32.979 0 67.67 ? C MEQ 401 B 1 
HETATM 10 O O MEQ . . . F 3 1.387 10.892 -34.221 0 67.85 ? O MEQ 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#