data_1NVA # _model_server_result.job_id Rkwj1f1lDXQvba7UmmNpSA _model_server_result.datetime_utc '2025-07-19 04:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1NVA # _exptl.entry_id 1NVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.71 _cell.angle_gamma 90 _cell.entry_id 1NVA _cell.length_a 41.01 _cell.length_b 68.91 _cell.length_c 137.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 194 A GLU 194 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 A NE2 HIS 271 A HIS 271 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A NE2 HIS 287 A HIS 287 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 B OE1 GLU 194 B GLU 194 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc5 B NE2 HIS 271 B HIS 271 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 B NE2 HIS 287 B HIS 287 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NVA _atom_sites.fract_transf_matrix[1][1] 0.024384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 600 600 ZN ZN . D 3 CL A 1 602 602 CL CL . E 4 ADP A 1 1400 400 ADP ADP . F 2 ZN B 1 601 601 ZN ZN . G 4 ADP B 1 1401 401 ADP ADP . H 5 HOH A 1 1401 7 HOH HOH . H 5 HOH A 2 1402 9 HOH HOH . H 5 HOH A 3 1403 10 HOH HOH . H 5 HOH A 4 1404 11 HOH HOH . H 5 HOH A 5 1405 12 HOH HOH . H 5 HOH A 6 1406 17 HOH HOH . H 5 HOH A 7 1407 18 HOH HOH . H 5 HOH A 8 1408 20 HOH HOH . H 5 HOH A 9 1409 23 HOH HOH . H 5 HOH A 10 1410 24 HOH HOH . H 5 HOH A 11 1411 31 HOH HOH . H 5 HOH A 12 1412 32 HOH HOH . H 5 HOH A 13 1413 33 HOH HOH . H 5 HOH A 14 1414 35 HOH HOH . H 5 HOH A 15 1415 36 HOH HOH . H 5 HOH A 16 1416 40 HOH HOH . H 5 HOH A 17 1417 41 HOH HOH . H 5 HOH A 18 1418 45 HOH HOH . H 5 HOH A 19 1419 46 HOH HOH . H 5 HOH A 20 1420 49 HOH HOH . H 5 HOH A 21 1421 51 HOH HOH . H 5 HOH A 22 1422 52 HOH HOH . H 5 HOH A 23 1423 53 HOH HOH . H 5 HOH A 24 1424 58 HOH HOH . H 5 HOH A 25 1425 63 HOH HOH . H 5 HOH A 26 1426 71 HOH HOH . H 5 HOH A 27 1427 72 HOH HOH . H 5 HOH A 28 1428 77 HOH HOH . H 5 HOH A 29 1429 79 HOH HOH . H 5 HOH A 30 1430 80 HOH HOH . H 5 HOH A 31 1431 82 HOH HOH . H 5 HOH A 32 1432 83 HOH HOH . H 5 HOH A 33 1433 86 HOH HOH . H 5 HOH A 34 1434 88 HOH HOH . H 5 HOH A 35 1435 90 HOH HOH . H 5 HOH A 36 1436 91 HOH HOH . H 5 HOH A 37 1437 94 HOH HOH . H 5 HOH A 38 1438 97 HOH HOH . H 5 HOH A 39 1439 101 HOH HOH . H 5 HOH A 40 1440 102 HOH HOH . H 5 HOH A 41 1441 103 HOH HOH . H 5 HOH A 42 1442 112 HOH HOH . H 5 HOH A 43 1443 117 HOH HOH . H 5 HOH A 44 1444 122 HOH HOH . H 5 HOH A 45 1445 123 HOH HOH . H 5 HOH A 46 1446 129 HOH HOH . H 5 HOH A 47 1447 132 HOH HOH . H 5 HOH A 48 1448 133 HOH HOH . H 5 HOH A 49 1449 146 HOH HOH . H 5 HOH A 50 1450 147 HOH HOH . H 5 HOH A 51 1451 149 HOH HOH . H 5 HOH A 52 1452 150 HOH HOH . H 5 HOH A 53 1453 152 HOH HOH . H 5 HOH A 54 1454 156 HOH HOH . H 5 HOH A 55 1455 157 HOH HOH . H 5 HOH A 56 1456 160 HOH HOH . H 5 HOH A 57 1457 161 HOH HOH . H 5 HOH A 58 1458 162 HOH HOH . H 5 HOH A 59 1459 163 HOH HOH . H 5 HOH A 60 1460 166 HOH HOH . H 5 HOH A 61 1461 168 HOH HOH . H 5 HOH A 62 1462 173 HOH HOH . H 5 HOH A 63 1463 174 HOH HOH . H 5 HOH A 64 1464 175 HOH HOH . H 5 HOH A 65 1465 177 HOH HOH . H 5 HOH A 66 1466 178 HOH HOH . H 5 HOH A 67 1467 179 HOH HOH . H 5 HOH A 68 1468 182 HOH HOH . H 5 HOH A 69 1469 186 HOH HOH . H 5 HOH A 70 1470 190 HOH HOH . H 5 HOH A 71 1471 196 HOH HOH . H 5 HOH A 72 1472 199 HOH HOH . H 5 HOH A 73 1473 200 HOH HOH . H 5 HOH A 74 1474 204 HOH HOH . H 5 HOH A 75 1475 206 HOH HOH . H 5 HOH A 76 1476 218 HOH HOH . H 5 HOH A 77 1477 225 HOH HOH . H 5 HOH A 78 1478 226 HOH HOH . H 5 HOH A 79 1479 228 HOH HOH . H 5 HOH A 80 1480 229 HOH HOH . H 5 HOH A 81 1481 233 HOH HOH . H 5 HOH A 82 1482 238 HOH HOH . H 5 HOH A 83 1483 240 HOH HOH . H 5 HOH A 84 1484 244 HOH HOH . H 5 HOH A 85 1485 246 HOH HOH . H 5 HOH A 86 1486 248 HOH HOH . H 5 HOH A 87 1487 251 HOH HOH . H 5 HOH A 88 1488 259 HOH HOH . H 5 HOH A 89 1489 263 HOH HOH . H 5 HOH A 90 1490 266 HOH HOH . H 5 HOH A 91 1491 272 HOH HOH . H 5 HOH A 92 1492 273 HOH HOH . H 5 HOH A 93 1493 280 HOH HOH . H 5 HOH A 94 1494 281 HOH HOH . H 5 HOH A 95 1495 285 HOH HOH . H 5 HOH A 96 1496 293 HOH HOH . H 5 HOH A 97 1497 297 HOH HOH . H 5 HOH A 98 1498 301 HOH HOH . H 5 HOH A 99 1499 305 HOH HOH . H 5 HOH A 100 1500 306 HOH HOH . H 5 HOH A 101 1501 308 HOH HOH . H 5 HOH A 102 1502 311 HOH HOH . H 5 HOH A 103 1503 313 HOH HOH . H 5 HOH A 104 1504 314 HOH HOH . H 5 HOH A 105 1505 318 HOH HOH . H 5 HOH A 106 1506 320 HOH HOH . H 5 HOH A 107 1507 321 HOH HOH . H 5 HOH A 108 1508 326 HOH HOH . H 5 HOH A 109 1509 330 HOH HOH . H 5 HOH A 110 1510 336 HOH HOH . H 5 HOH A 111 1511 344 HOH HOH . H 5 HOH A 112 1512 351 HOH HOH . H 5 HOH A 113 1513 359 HOH HOH . H 5 HOH A 114 1514 362 HOH HOH . H 5 HOH A 115 1515 368 HOH HOH . H 5 HOH A 116 1516 378 HOH HOH . H 5 HOH A 117 1517 379 HOH HOH . H 5 HOH A 118 1518 389 HOH HOH . H 5 HOH A 119 1519 395 HOH HOH . H 5 HOH A 120 1520 398 HOH HOH . H 5 HOH A 121 1521 399 HOH HOH . H 5 HOH A 122 1522 400 HOH HOH . H 5 HOH A 123 1523 401 HOH HOH . H 5 HOH A 124 1524 402 HOH HOH . H 5 HOH A 125 1525 409 HOH HOH . H 5 HOH A 126 1526 412 HOH HOH . H 5 HOH A 127 1527 414 HOH HOH . H 5 HOH A 128 1528 418 HOH HOH . I 5 HOH B 1 1402 1 HOH HOH . I 5 HOH B 2 1403 8 HOH HOH . I 5 HOH B 3 1404 13 HOH HOH . I 5 HOH B 4 1405 19 HOH HOH . I 5 HOH B 5 1406 21 HOH HOH . I 5 HOH B 6 1407 22 HOH HOH . I 5 HOH B 7 1408 25 HOH HOH . I 5 HOH B 8 1409 34 HOH HOH . I 5 HOH B 9 1410 42 HOH HOH . I 5 HOH B 10 1411 44 HOH HOH . I 5 HOH B 11 1412 47 HOH HOH . I 5 HOH B 12 1413 48 HOH HOH . I 5 HOH B 13 1414 54 HOH HOH . I 5 HOH B 14 1415 55 HOH HOH . I 5 HOH B 15 1416 56 HOH HOH . I 5 HOH B 16 1417 59 HOH HOH . I 5 HOH B 17 1418 60 HOH HOH . I 5 HOH B 18 1419 61 HOH HOH . I 5 HOH B 19 1420 65 HOH HOH . I 5 HOH B 20 1421 67 HOH HOH . I 5 HOH B 21 1422 69 HOH HOH . I 5 HOH B 22 1423 73 HOH HOH . I 5 HOH B 23 1424 74 HOH HOH . I 5 HOH B 24 1425 75 HOH HOH . I 5 HOH B 25 1426 76 HOH HOH . I 5 HOH B 26 1427 78 HOH HOH . I 5 HOH B 27 1428 81 HOH HOH . I 5 HOH B 28 1429 85 HOH HOH . I 5 HOH B 29 1430 89 HOH HOH . I 5 HOH B 30 1431 98 HOH HOH . I 5 HOH B 31 1432 104 HOH HOH . I 5 HOH B 32 1433 105 HOH HOH . I 5 HOH B 33 1434 106 HOH HOH . I 5 HOH B 34 1435 109 HOH HOH . I 5 HOH B 35 1436 111 HOH HOH . I 5 HOH B 36 1437 113 HOH HOH . I 5 HOH B 37 1438 115 HOH HOH . I 5 HOH B 38 1439 116 HOH HOH . I 5 HOH B 39 1440 118 HOH HOH . I 5 HOH B 40 1441 119 HOH HOH . I 5 HOH B 41 1442 120 HOH HOH . I 5 HOH B 42 1443 124 HOH HOH . I 5 HOH B 43 1444 127 HOH HOH . I 5 HOH B 44 1445 130 HOH HOH . I 5 HOH B 45 1446 131 HOH HOH . I 5 HOH B 46 1447 140 HOH HOH . I 5 HOH B 47 1448 141 HOH HOH . I 5 HOH B 48 1449 144 HOH HOH . I 5 HOH B 49 1450 148 HOH HOH . I 5 HOH B 50 1451 154 HOH HOH . I 5 HOH B 51 1452 158 HOH HOH . I 5 HOH B 52 1453 171 HOH HOH . I 5 HOH B 53 1454 172 HOH HOH . I 5 HOH B 54 1455 176 HOH HOH . I 5 HOH B 55 1456 184 HOH HOH . I 5 HOH B 56 1457 189 HOH HOH . I 5 HOH B 57 1458 201 HOH HOH . I 5 HOH B 58 1459 202 HOH HOH . I 5 HOH B 59 1460 203 HOH HOH . I 5 HOH B 60 1461 207 HOH HOH . I 5 HOH B 61 1462 209 HOH HOH . I 5 HOH B 62 1463 210 HOH HOH . I 5 HOH B 63 1464 212 HOH HOH . I 5 HOH B 64 1465 216 HOH HOH . I 5 HOH B 65 1466 217 HOH HOH . I 5 HOH B 66 1467 219 HOH HOH . I 5 HOH B 67 1468 222 HOH HOH . I 5 HOH B 68 1469 223 HOH HOH . I 5 HOH B 69 1470 227 HOH HOH . I 5 HOH B 70 1471 231 HOH HOH . I 5 HOH B 71 1472 234 HOH HOH . I 5 HOH B 72 1473 236 HOH HOH . I 5 HOH B 73 1474 239 HOH HOH . I 5 HOH B 74 1475 241 HOH HOH . I 5 HOH B 75 1476 250 HOH HOH . I 5 HOH B 76 1477 256 HOH HOH . I 5 HOH B 77 1478 257 HOH HOH . I 5 HOH B 78 1479 261 HOH HOH . I 5 HOH B 79 1480 262 HOH HOH . I 5 HOH B 80 1481 265 HOH HOH . I 5 HOH B 81 1482 267 HOH HOH . I 5 HOH B 82 1483 271 HOH HOH . I 5 HOH B 83 1484 274 HOH HOH . I 5 HOH B 84 1485 275 HOH HOH . I 5 HOH B 85 1486 276 HOH HOH . I 5 HOH B 86 1487 278 HOH HOH . I 5 HOH B 87 1488 279 HOH HOH . I 5 HOH B 88 1489 286 HOH HOH . I 5 HOH B 89 1490 287 HOH HOH . I 5 HOH B 90 1491 290 HOH HOH . I 5 HOH B 91 1492 294 HOH HOH . I 5 HOH B 92 1493 298 HOH HOH . I 5 HOH B 93 1494 299 HOH HOH . I 5 HOH B 94 1495 300 HOH HOH . I 5 HOH B 95 1496 303 HOH HOH . I 5 HOH B 96 1497 304 HOH HOH . I 5 HOH B 97 1498 307 HOH HOH . I 5 HOH B 98 1499 312 HOH HOH . I 5 HOH B 99 1500 317 HOH HOH . I 5 HOH B 100 1501 319 HOH HOH . I 5 HOH B 101 1502 323 HOH HOH . I 5 HOH B 102 1503 324 HOH HOH . I 5 HOH B 103 1504 327 HOH HOH . I 5 HOH B 104 1505 328 HOH HOH . I 5 HOH B 105 1506 329 HOH HOH . I 5 HOH B 106 1507 332 HOH HOH . I 5 HOH B 107 1508 335 HOH HOH . I 5 HOH B 108 1509 337 HOH HOH . I 5 HOH B 109 1510 338 HOH HOH . I 5 HOH B 110 1511 339 HOH HOH . I 5 HOH B 111 1512 341 HOH HOH . I 5 HOH B 112 1513 345 HOH HOH . I 5 HOH B 113 1514 356 HOH HOH . I 5 HOH B 114 1515 364 HOH HOH . I 5 HOH B 115 1516 371 HOH HOH . I 5 HOH B 116 1517 372 HOH HOH . I 5 HOH B 117 1518 374 HOH HOH . I 5 HOH B 118 1519 375 HOH HOH . I 5 HOH B 119 1520 377 HOH HOH . I 5 HOH B 120 1521 381 HOH HOH . I 5 HOH B 121 1522 388 HOH HOH . I 5 HOH B 122 1523 390 HOH HOH . I 5 HOH B 123 1524 394 HOH HOH . I 5 HOH B 124 1525 404 HOH HOH . I 5 HOH B 125 1526 407 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -56.594 _atom_site.Cartn_y 99.935 _atom_site.Cartn_z 254.994 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #